Wall clock time and date at job start Tue Mar 31 2020 11:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48495 * 109.47098 * 274.89247 * 3 2 1 5 5 H 1.48496 * 109.47208 * 34.89547 * 3 2 1 6 6 H 1.48502 * 109.46993 * 154.89455 * 3 2 1 7 7 C 1.39014 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99661 * 3.96339 * 7 2 1 9 9 N 1.36885 * 120.00096 * 183.95597 * 7 2 1 10 10 C 1.38212 * 125.61569 * 126.50105 * 9 7 2 11 11 C 1.46888 * 125.43788 * 359.71479 * 10 9 7 12 12 O 1.21671 * 119.99857 * 185.57008 * 11 10 9 13 13 N 1.34770 * 120.00070 * 5.57008 * 11 10 9 14 14 C 1.46505 * 119.99990 * 184.76193 * 13 11 10 15 15 H 1.08994 * 110.01968 * 29.74284 * 14 13 11 16 16 C 1.54266 * 110.03320 * 268.29748 * 14 13 11 17 17 C 1.54889 * 104.19621 * 217.10575 * 16 14 13 18 18 C 1.54887 * 102.74926 * 37.94490 * 17 16 14 19 19 C 1.53880 * 110.03226 * 151.13248 * 14 13 11 20 20 H 1.09009 * 110.02985 * 0.02562 * 19 14 13 21 21 O 1.42895 * 110.03402 * 238.56946 * 19 14 13 22 22 C 1.36122 * 109.12880 * 179.74020 * 10 9 7 23 23 C 1.41707 * 107.74528 * 359.97438 * 22 10 9 24 24 C 1.40023 * 133.34904 * 180.02562 * 23 22 10 25 25 C 1.36580 * 119.82867 * 180.02562 * 24 23 22 26 26 C 1.38857 * 120.60076 * 359.91818 * 25 24 23 27 27 C 1.37845 * 120.63255 * 0.03796 * 26 25 24 28 28 C 1.37836 * 125.62474 * 306.19524 * 9 7 2 29 29 H 0.96999 * 119.99400 * 5.00374 * 1 2 3 30 30 H 0.97004 * 119.99976 * 4.76777 * 13 11 10 31 31 H 1.09003 * 110.48497 * 335.78783 * 16 14 13 32 32 H 1.08999 * 110.48347 * 98.42943 * 16 14 13 33 33 H 1.08993 * 110.75467 * 279.62981 * 17 16 14 34 34 H 1.09005 * 110.91028 * 156.33244 * 17 16 14 35 35 H 1.08993 * 110.48468 * 203.37822 * 18 17 16 36 36 H 1.09002 * 110.59893 * 80.78825 * 18 17 16 37 37 H 0.96699 * 114.00068 * 179.97438 * 21 19 14 38 38 H 1.07999 * 126.12900 * 180.02562 * 22 10 9 39 39 H 1.07993 * 120.08928 * 359.94779 * 24 23 22 40 40 H 1.07996 * 119.70163 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.68207 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.09260 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3917 2.1060 -1.3949 5 1 1.5006 2.6205 0.8009 6 1 3.5930 1.4124 0.5940 7 6 2.0086 -1.2039 0.0005 8 1 1.4704 -2.1381 -0.0637 9 7 3.3750 -1.2053 0.0823 10 6 4.1251 -1.9049 1.0087 11 6 3.5830 -2.7637 2.0699 12 8 4.3292 -3.2542 2.8962 13 7 2.2589 -3.0083 2.1283 14 6 1.7047 -3.7779 3.2449 15 1 2.3102 -3.6277 4.1386 16 6 1.6587 -5.2767 2.8823 17 6 0.3451 -5.7835 3.5279 18 6 -0.6254 -4.5972 3.3047 19 6 0.2524 -3.3459 3.5134 20 1 -0.0401 -2.5638 2.8126 21 8 0.1221 -2.8750 4.8563 22 6 5.4466 -1.6706 0.7811 23 6 5.5450 -0.7931 -0.3272 24 6 6.6270 -0.2160 -1.0032 25 6 6.4008 0.6123 -2.0653 26 6 5.1058 0.8876 -2.4838 27 6 4.0246 0.3307 -1.8349 28 6 4.2298 -0.5141 -0.7492 29 1 -0.4849 0.8369 -0.0733 30 1 1.6729 -2.6748 1.4309 31 1 1.6270 -5.4067 1.8005 32 1 2.5174 -5.7980 3.3052 33 1 0.4857 -5.9726 4.5921 34 1 -0.0166 -6.6789 3.0224 35 1 -1.4334 -4.6226 4.0357 36 1 -1.0278 -4.6162 2.2918 37 1 -0.7717 -2.5872 5.0872 38 1 6.2721 -2.0807 1.3438 39 1 7.6377 -0.4244 -0.6848 40 1 7.2369 1.0566 -2.5849 41 1 4.9441 1.5444 -3.3257 42 1 3.0210 0.5510 -2.1676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590895585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:34 Heat of formation + Delta-G solvation = -44.570539 kcal Electronic energy + Delta-G solvation = -26636.584152 eV Core-core repulsion = 22966.928755 eV Total energy + Delta-G solvation = -3669.655398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55826 -40.83298 -39.29081 -37.81377 -36.29049 -35.44466 -34.45760 -33.18780 -30.97132 -30.21932 -28.89211 -28.31061 -26.75377 -24.74831 -22.83337 -22.16582 -21.91182 -21.48173 -20.93354 -20.17520 -18.64591 -17.88361 -17.65504 -17.29157 -16.80025 -16.45140 -16.28709 -16.16799 -15.86746 -15.50286 -15.04845 -15.02377 -14.85413 -14.53587 -14.06493 -13.87455 -13.67386 -13.66157 -13.30866 -13.19529 -12.89360 -12.62157 -12.50222 -12.35288 -12.08924 -11.93629 -11.75375 -11.68085 -11.57931 -11.26872 -11.15439 -10.92227 -10.47690 -10.12971 -9.03664 -8.85417 -8.58744 -6.75575 -0.08544 0.87289 1.06199 1.16371 1.27989 1.36822 1.98858 2.11827 2.32909 2.45631 2.63617 3.09703 3.19220 3.53776 3.67465 3.92008 3.94711 3.98999 4.25993 4.29325 4.34951 4.38704 4.41835 4.55025 4.58006 4.63029 4.70403 4.77166 4.90802 4.94075 5.00211 5.07459 5.07989 5.12912 5.21765 5.33311 5.39107 5.51218 5.64543 5.67612 5.77030 5.93411 6.00581 6.36174 6.50005 6.72223 6.81857 7.16550 7.20287 8.20940 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.005063 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.544102 B = 5528.614667 C = 6632.741785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.063 3.937 3 Si 0.921 3.079 4 H -0.233 1.233 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.375 4.375 8 H 0.105 0.895 9 N -0.306 5.306 10 C -0.030 4.030 11 C 0.589 3.411 12 O -0.577 6.577 13 N -0.711 5.711 14 C 0.135 3.865 15 H 0.074 0.926 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.144 4.144 19 C 0.094 3.906 20 H 0.050 0.950 21 O -0.576 6.576 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.071 4.071 25 C -0.154 4.154 26 C -0.102 4.102 27 C -0.159 4.159 28 C 0.059 3.941 29 H 0.292 0.708 30 H 0.415 0.585 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.396 0.604 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -3.221 0.192 3.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.149 4.149 3 Si 0.746 3.254 4 H -0.157 1.157 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.501 4.501 8 H 0.122 0.878 9 N 0.026 4.974 10 C -0.143 4.143 11 C 0.378 3.622 12 O -0.458 6.458 13 N -0.369 5.369 14 C 0.031 3.969 15 H 0.092 0.908 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.182 4.182 19 C 0.034 3.966 20 H 0.068 0.932 21 O -0.385 6.385 22 C -0.183 4.183 23 C -0.152 4.152 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.121 4.121 27 C -0.179 4.179 28 C -0.054 4.054 29 H 0.103 0.897 30 H 0.261 0.739 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.644 -3.632 0.879 3.792 hybrid contribution -0.950 1.079 -0.223 1.455 sum -0.306 -2.552 0.655 2.653 Atomic orbital electron populations 1.69599 1.06666 1.30731 1.41995 1.25887 0.95869 1.01092 0.92062 0.86198 0.78899 0.79600 0.80657 1.15653 1.21521 1.19788 1.18930 0.78163 0.95755 1.57259 0.87804 1.40243 1.04618 1.33412 1.19174 1.20608 0.92451 1.05255 0.95962 1.17291 0.82670 0.79118 0.83129 1.90688 1.59349 1.53704 1.42058 1.46796 1.07917 1.54844 1.27305 1.21626 0.93907 0.91860 0.89547 0.90783 1.22733 0.99812 0.92905 1.01286 1.22412 0.92831 0.98011 1.01384 1.23008 0.98132 0.93590 1.03438 1.22558 0.93924 0.96154 0.83949 0.93168 1.86463 1.37097 1.85905 1.29001 1.20823 0.94167 1.03072 1.00232 1.18426 0.93245 1.03597 0.99923 1.20682 0.97446 0.95876 0.94908 1.20917 0.97156 1.00794 0.98396 1.21178 0.91838 0.99402 0.99729 1.20383 1.00294 1.00529 0.96726 1.18986 0.90284 1.00652 0.95453 0.89711 0.73885 0.91370 0.91204 0.90430 0.88993 0.88374 0.90200 0.75340 0.82854 0.83664 0.82426 0.83191 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.11 13.95 21.67 0.30 -42.80 16 2 C 0.06 3.13 5.49 84.95 0.47 3.60 16 3 Si 0.92 41.85 23.54 68.60 1.62 43.47 16 4 H -0.23 -9.57 6.07 99.48 0.60 -8.96 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -13.58 6.25 99.48 0.62 -12.96 16 7 C -0.37 -18.89 8.30 84.09 0.70 -18.19 16 8 H 0.10 5.38 6.45 -2.91 -0.02 5.36 16 9 N -0.31 -15.08 2.41 -331.35 -0.80 -15.88 16 10 C -0.03 -1.45 6.77 39.91 0.27 -1.18 16 11 C 0.59 27.90 7.76 86.51 0.67 28.57 16 12 O -0.58 -28.65 16.48 -4.26 -0.07 -28.72 16 13 N -0.71 -30.28 4.88 -442.86 -2.16 -32.44 16 14 C 0.14 4.91 3.09 45.72 0.14 5.05 16 15 H 0.07 3.05 7.33 -2.39 -0.02 3.03 16 16 C -0.13 -3.82 6.53 31.67 0.21 -3.61 16 17 C -0.11 -2.40 6.91 31.88 0.22 -2.18 16 18 C -0.14 -3.27 6.56 31.67 0.21 -3.06 16 19 C 0.09 2.91 4.03 31.32 0.13 3.03 16 20 H 0.05 1.79 7.67 -2.38 -0.02 1.77 16 21 O -0.58 -16.99 13.21 -148.98 -1.97 -18.96 16 22 C -0.16 -6.89 10.55 22.63 0.24 -6.65 16 23 C -0.15 -6.25 6.16 -21.33 -0.13 -6.38 16 24 C -0.07 -2.35 10.06 22.31 0.22 -2.13 16 25 C -0.15 -4.49 9.97 22.03 0.22 -4.27 16 26 C -0.10 -3.31 10.02 22.32 0.22 -3.09 16 27 C -0.16 -6.57 6.88 22.38 0.15 -6.42 16 28 C 0.06 2.72 4.57 39.06 0.18 2.90 16 29 H 0.29 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.42 18.34 4.26 -92.71 -0.40 17.95 16 31 H 0.07 2.07 8.05 -2.39 -0.02 2.05 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.40 7.68 9.11 -74.06 -0.67 7.01 16 38 H 0.15 6.14 8.06 -2.91 -0.02 6.12 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.11 4.72 5.72 -2.91 -0.02 4.70 16 Total: -1.00 -63.99 337.31 0.84 -63.15 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.19 Total: 46.21 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.12 Total: -14.02 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -2.66 Total: -91.12 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -2.04 Total: -47.68 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.62 Total: 43.47 kcal Total: -63.99 0.84 -63.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590895585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.577 kcal (2) G-P(sol) polarization free energy of solvation -63.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds