Wall clock time and date at job start Tue Mar 31 2020 11:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86807 * 120.00109 * 2 1 4 4 H 1.48504 * 109.46863 * 276.31440 * 3 2 1 5 5 H 1.48492 * 109.46965 * 36.31394 * 3 2 1 6 6 H 1.48497 * 109.47182 * 156.31633 * 3 2 1 7 7 C 1.39005 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00295 * 348.70766 * 7 2 1 9 9 N 1.36896 * 119.99874 * 168.70963 * 7 2 1 10 10 C 1.38211 * 125.62074 * 131.93144 * 9 7 2 11 11 C 1.46891 * 125.43814 * 0.02562 * 10 9 7 12 12 O 1.21665 * 119.99854 * 333.80442 * 11 10 9 13 13 N 1.34771 * 120.00271 * 153.79740 * 11 10 9 14 14 C 1.46931 * 120.62900 * 358.77357 * 13 11 10 15 15 C 1.53190 * 108.77690 * 233.58471 * 14 13 11 16 16 C 1.53048 * 109.31119 * 305.36334 * 15 14 13 17 17 C 1.53039 * 109.53552 * 61.36555 * 16 15 14 18 18 H 1.09002 * 109.50125 * 58.58620 * 17 16 15 19 19 O 1.42904 * 109.49649 * 178.65126 * 17 16 15 20 20 C 1.46922 * 120.63293 * 178.49253 * 13 11 10 21 21 C 1.36122 * 109.12612 * 180.02562 * 10 9 7 22 22 C 1.41693 * 107.75168 * 359.97438 * 21 10 9 23 23 C 1.40023 * 133.35762 * 180.32174 * 22 21 10 24 24 C 1.36577 * 119.83123 * 180.16606 * 23 22 21 25 25 C 1.38848 * 120.60332 * 359.49973 * 24 23 22 26 26 C 1.37847 * 120.63208 * 0.22880 * 25 24 23 27 27 C 1.37841 * 125.62186 * 311.92834 * 9 7 2 28 28 H 0.97006 * 119.99674 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58714 * 353.37362 * 14 13 11 30 30 H 1.09005 * 109.58415 * 113.79362 * 14 13 11 31 31 H 1.08997 * 109.49828 * 65.31520 * 15 14 13 32 32 H 1.08996 * 109.49880 * 185.38259 * 15 14 13 33 33 H 1.08998 * 109.46058 * 181.38274 * 16 15 14 34 34 H 1.09005 * 109.45965 * 301.35915 * 16 15 14 35 35 H 0.96697 * 113.99897 * 180.02562 * 19 17 16 36 36 H 1.09006 * 109.58790 * 246.20243 * 20 13 11 37 37 H 1.09000 * 109.58632 * 6.62525 * 20 13 11 38 38 H 1.07998 * 126.12236 * 180.02562 * 21 10 9 39 39 H 1.08001 * 120.08604 * 359.91957 * 23 22 21 40 40 H 1.08002 * 119.70065 * 179.77287 * 24 23 22 41 41 H 1.08008 * 119.68741 * 180.25356 * 25 24 23 42 42 H 1.07998 * 120.09824 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3617 2.1234 -1.3916 5 1 1.5181 2.6105 0.8291 6 1 3.6054 1.4054 0.5624 7 6 2.0085 -1.2038 0.0005 8 1 1.4842 -2.1300 0.1841 9 7 3.3576 -1.2154 -0.2316 10 6 4.2988 -1.8872 0.5254 11 6 4.0119 -2.7058 1.7108 12 8 3.0210 -2.4810 2.3800 13 7 4.8462 -3.7061 2.0570 14 6 6.0322 -4.0070 1.2436 15 6 6.0095 -5.4923 0.8693 16 6 5.8905 -6.3334 2.1424 17 6 4.5808 -5.9956 2.8584 18 1 3.7409 -6.1896 2.1913 19 8 4.4557 -6.8038 4.0303 20 6 4.5903 -4.5123 3.2583 21 6 5.5342 -1.6690 -0.0029 22 6 5.3782 -0.8311 -1.1348 23 6 6.2778 -0.2886 -2.0606 24 6 5.8166 0.5076 -3.0699 25 6 4.4601 0.7771 -3.1939 26 6 3.5546 0.2500 -2.2981 27 6 4.0011 -0.5591 -1.2588 28 1 -0.4850 0.8401 -0.0004 29 1 6.0171 -3.4015 0.3374 30 1 6.9333 -3.7883 1.8167 31 1 5.1562 -5.6911 0.2209 32 1 6.9309 -5.7501 0.3473 33 1 5.8989 -7.3914 1.8807 34 1 6.7311 -6.1156 2.8014 35 1 3.6465 -6.6427 4.5345 36 1 5.3763 -4.3340 3.9923 37 1 3.6235 -4.2403 3.6819 38 1 6.4663 -2.0646 0.3729 39 1 7.3342 -0.4960 -1.9745 40 1 6.5127 0.9279 -3.7806 41 1 4.1111 1.4054 -4.0001 42 1 2.5014 0.4649 -2.4030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593885297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:24 Heat of formation + Delta-G solvation = -24.019303 kcal Electronic energy + Delta-G solvation = -26777.604848 eV Core-core repulsion = 23108.840619 eV Total energy + Delta-G solvation = -3668.764229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.63000 -40.92090 -38.94663 -37.67783 -36.95654 -35.44612 -33.63245 -33.11954 -31.41452 -30.86069 -29.59606 -26.91867 -26.81457 -24.32076 -24.03528 -22.77115 -22.01430 -21.44326 -20.51464 -19.68988 -18.40654 -17.92822 -17.63399 -17.41870 -16.84769 -16.55731 -16.13913 -15.91271 -15.48533 -15.41065 -15.20784 -15.02195 -14.77742 -14.50318 -14.32107 -14.09285 -13.86139 -13.65264 -13.40153 -13.20600 -12.89260 -12.82974 -12.52014 -12.32423 -12.03322 -11.99878 -11.86842 -11.57032 -11.43946 -11.28193 -11.25483 -10.91283 -10.37560 -9.70888 -9.01892 -8.82440 -8.57626 -6.59996 -0.00146 0.91017 1.06191 1.11047 1.24082 1.32741 1.66321 1.97566 2.27865 2.62988 2.75199 3.14431 3.21864 3.52985 3.76289 3.86790 3.98873 4.04715 4.07971 4.24401 4.29050 4.36453 4.48502 4.54258 4.63479 4.66132 4.73830 4.79731 4.82532 4.92588 4.98903 5.05485 5.07748 5.13268 5.26946 5.35115 5.38767 5.51460 5.68015 5.76061 5.81793 6.00542 6.08498 6.31090 6.42915 6.69263 6.77913 7.10671 7.20685 8.29537 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.005179 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.159243 B = 5404.689114 C = 6759.653539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.043 3.957 3 Si 0.934 3.066 4 H -0.224 1.224 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.346 4.346 8 H 0.067 0.933 9 N -0.296 5.296 10 C -0.034 4.034 11 C 0.577 3.423 12 O -0.575 6.575 13 N -0.594 5.594 14 C 0.061 3.939 15 C -0.125 4.125 16 C -0.108 4.108 17 C 0.098 3.902 18 H 0.040 0.960 19 O -0.570 6.570 20 C 0.084 3.916 21 C -0.173 4.173 22 C -0.138 4.138 23 C -0.064 4.064 24 C -0.153 4.153 25 C -0.107 4.107 26 C -0.154 4.154 27 C 0.040 3.960 28 H 0.289 0.711 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.394 0.606 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.198 0.802 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.849 -6.561 -1.304 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.165 4.165 3 Si 0.756 3.244 4 H -0.147 1.147 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.474 4.474 8 H 0.084 0.916 9 N 0.038 4.962 10 C -0.148 4.148 11 C 0.367 3.633 12 O -0.455 6.455 13 N -0.328 5.328 14 C -0.059 4.059 15 C -0.164 4.164 16 C -0.145 4.145 17 C 0.038 3.962 18 H 0.059 0.941 19 O -0.376 6.376 20 C -0.038 4.038 21 C -0.199 4.199 22 C -0.143 4.143 23 C -0.083 4.083 24 C -0.172 4.172 25 C -0.127 4.127 26 C -0.174 4.174 27 C -0.072 4.072 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.214 0.786 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.264 -6.635 -1.034 18.524 hybrid contribution -1.907 0.787 0.754 2.197 sum 15.356 -5.849 -0.279 16.435 Atomic orbital electron populations 1.69699 1.07544 1.30150 1.44396 1.26059 0.95994 1.01720 0.92680 0.86014 0.78567 0.78768 0.81024 1.14693 1.20603 1.20001 1.18756 0.80546 0.95376 1.52689 0.91560 1.40134 1.04671 1.34000 1.17357 1.20285 0.90461 1.06663 0.97393 1.17515 0.82034 0.80319 0.83441 1.90790 1.29186 1.70540 1.54973 1.47757 1.26512 1.31307 1.27266 1.23098 0.86651 0.98253 0.97910 1.21906 1.04127 0.93323 0.96996 1.21507 0.95503 1.00992 0.96501 1.22147 0.99292 0.87824 0.86909 0.94149 1.86453 1.48095 1.63423 1.39664 1.22454 1.03014 0.91150 0.87224 1.21350 0.95895 1.04489 0.98206 1.18484 0.91740 1.03944 1.00103 1.20705 0.99422 0.95664 0.92492 1.20935 0.94923 1.01141 1.00190 1.21119 0.93705 0.99785 0.98087 1.20324 0.99768 1.01060 0.96290 1.19028 0.93482 1.02041 0.92609 0.90065 0.86054 0.87906 0.93152 0.86362 0.90252 0.89612 0.75658 0.88859 0.91378 0.78561 0.82290 0.82333 0.83857 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.97 13.95 21.67 0.30 -53.67 16 2 C 0.04 2.54 5.15 84.95 0.44 2.98 16 3 Si 0.93 46.94 24.00 68.60 1.65 48.59 16 4 H -0.22 -10.05 5.89 99.48 0.59 -9.46 16 5 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -14.57 6.96 99.48 0.69 -13.88 16 7 C -0.35 -21.25 9.01 84.09 0.76 -20.50 16 8 H 0.07 4.58 8.06 -2.91 -0.02 4.55 16 9 N -0.30 -15.83 2.36 -331.35 -0.78 -16.61 16 10 C -0.03 -1.55 6.43 39.91 0.26 -1.29 16 11 C 0.58 25.98 7.52 86.51 0.65 26.63 16 12 O -0.58 -31.69 15.37 -4.24 -0.07 -31.75 16 13 N -0.59 -19.00 2.97 -822.53 -2.44 -21.44 16 14 C 0.06 1.34 5.27 86.36 0.46 1.79 16 15 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 16 C -0.11 -1.97 5.53 30.62 0.17 -1.80 16 17 C 0.10 2.31 3.63 30.82 0.11 2.42 16 18 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 19 O -0.57 -12.20 13.32 -148.98 -1.98 -14.18 16 20 C 0.08 2.33 6.09 86.51 0.53 2.86 16 21 C -0.17 -6.21 8.47 22.63 0.19 -6.02 16 22 C -0.14 -5.27 6.16 -21.34 -0.13 -5.40 16 23 C -0.06 -1.85 10.06 22.31 0.22 -1.62 16 24 C -0.15 -4.16 9.97 22.03 0.22 -3.94 16 25 C -0.11 -3.54 10.02 22.32 0.22 -3.32 16 26 C -0.15 -6.73 6.91 22.38 0.15 -6.57 16 27 C 0.04 1.91 4.98 39.06 0.19 2.10 16 28 H 0.29 16.06 8.31 -92.70 -0.77 15.29 16 29 H 0.12 2.88 3.45 -2.39 -0.01 2.88 16 30 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.39 5.98 9.09 -74.06 -0.67 5.30 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 37 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 38 H 0.20 4.87 5.68 -2.91 -0.02 4.86 16 39 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 42 H 0.10 4.51 6.05 -2.91 -0.02 4.49 16 Total: -1.00 -81.34 332.01 1.56 -79.78 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.25 Total: 23.02 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.63 Total: -13.74 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.92 Total: -91.72 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -2.05 Total: -45.94 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.65 Total: 48.59 kcal Total: -81.34 1.56 -79.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593885297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.761 kcal (2) G-P(sol) polarization free energy of solvation -81.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds