Wall clock time and date at job start Tue Mar 31 2020 11:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47260 * 240.00010 * 3 2 1 5 5 H 1.48498 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46852 * 119.99612 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00161 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99670 * 269.99805 * 10 9 7 12 12 C 1.52998 * 109.47295 * 269.99825 * 11 10 9 13 13 C 1.52995 * 117.50022 * 243.62048 * 12 11 10 14 14 C 1.52993 * 60.00359 * 252.51097 * 13 12 11 15 15 C 1.34770 * 120.00353 * 89.99982 * 10 9 7 16 16 O 1.21587 * 119.99852 * 359.97438 * 15 10 9 17 17 N 1.34776 * 120.00268 * 180.02562 * 15 10 9 18 18 C 1.40153 * 120.00287 * 185.30851 * 17 15 10 19 19 C 1.39318 * 119.93648 * 213.32515 * 18 17 15 20 20 C 1.37739 * 120.62294 * 180.02562 * 19 18 17 21 21 C 1.38942 * 120.05627 * 0.02678 * 20 19 18 22 22 O 1.34923 * 133.31744 * 180.02562 * 21 20 19 23 23 C 1.34435 * 110.88498 * 179.97438 * 22 21 20 24 24 C 1.33995 * 110.16116 * 0.02562 * 23 22 21 25 25 C 1.40459 * 119.43360 * 359.97438 * 21 20 19 26 26 C 1.38302 * 119.93502 * 33.34476 * 18 17 15 27 27 H 0.96992 * 119.99804 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 60.00056 * 9 7 2 29 29 H 1.08998 * 109.47305 * 299.99534 * 9 7 2 30 30 H 1.09005 * 109.47548 * 30.00226 * 11 10 9 31 31 H 1.09007 * 109.47340 * 149.99735 * 11 10 9 32 32 H 1.08995 * 115.54886 * 29.33277 * 12 11 10 33 33 H 1.09000 * 117.49899 * 0.02562 * 13 12 11 34 34 H 1.09004 * 117.49952 * 145.02397 * 13 12 11 35 35 H 1.08998 * 117.50115 * 252.51229 * 14 13 12 36 36 H 1.09006 * 117.50099 * 107.48651 * 14 13 12 37 37 H 0.97005 * 120.00155 * 5.29988 * 17 15 10 38 38 H 1.08003 * 119.69042 * 0.02562 * 19 18 17 39 39 H 1.08004 * 119.96856 * 180.02562 * 20 19 18 40 40 H 1.08002 * 124.92227 * 179.97438 * 23 22 21 41 41 H 1.07990 * 126.90549 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.23056 * 359.95804 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.6800 -4.1688 -1.2701 12 6 1.7496 -5.2998 -1.7130 13 6 2.3417 -6.7078 -1.8016 14 6 2.0110 -5.9352 -3.0801 15 6 2.6401 -4.1254 1.1657 16 8 2.2446 -3.6635 2.2186 17 7 3.5163 -5.1495 1.1659 18 6 3.8855 -5.7557 2.3745 19 6 5.1742 -6.2603 2.5340 20 6 5.5520 -6.8593 3.7153 21 6 4.6451 -6.9659 4.7626 22 8 4.7229 -7.4862 6.0050 23 6 3.5556 -7.3462 6.6572 24 6 2.6602 -6.7296 5.8740 25 6 3.3452 -6.4580 4.6044 26 6 2.9695 -5.8523 3.4062 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.6883 -3.3868 -2.0295 31 1 3.6894 -4.5589 -1.1393 32 1 0.7125 -5.2090 -1.3903 33 1 3.3939 -6.8285 -1.5440 34 1 1.6940 -7.5437 -1.5370 35 1 1.1459 -6.2627 -3.6565 36 1 2.8458 -5.5474 -3.6640 37 1 3.8914 -5.4671 0.3296 38 1 5.8839 -6.1810 1.7236 39 1 6.5540 -7.2465 3.8277 40 1 3.3667 -7.6829 7.6658 41 1 1.6399 -6.4816 6.1264 42 1 1.9701 -5.4614 3.2845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599905758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:57 Heat of formation + Delta-G solvation = 40.417131 kcal Electronic energy + Delta-G solvation = -25633.175402 eV Core-core repulsion = 21967.205346 eV Total energy + Delta-G solvation = -3665.970056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29077 -40.10185 -37.93613 -37.07628 -34.55547 -34.00054 -32.67876 -32.45895 -29.41256 -28.97677 -27.70631 -26.06595 -23.73119 -22.82628 -22.33755 -21.76546 -21.24443 -20.81859 -19.32501 -18.20610 -17.38676 -17.06027 -16.46127 -16.24267 -15.98005 -15.13527 -14.97770 -14.78950 -14.19605 -14.12819 -14.07000 -13.58522 -13.18436 -13.04895 -12.75860 -12.64026 -12.53444 -12.11295 -12.10260 -11.56334 -11.48732 -11.21587 -11.04383 -10.91879 -10.61657 -10.37777 -10.15360 -10.12592 -9.92049 -9.88689 -9.61755 -9.24808 -8.42736 -8.20626 -7.87530 -7.53350 -6.04099 -4.08669 1.00698 1.46045 2.43253 2.84899 3.16313 3.32372 3.37012 3.40856 3.63866 3.82419 4.03188 4.32713 4.46748 4.58803 4.78042 4.86359 4.96253 5.07413 5.12815 5.24044 5.30236 5.31328 5.37270 5.41844 5.63248 5.69103 5.76289 5.90442 5.93094 5.99006 6.05450 6.12191 6.29020 6.36841 6.40098 6.46498 6.55740 6.82408 7.01674 7.29874 7.34187 7.48893 7.65955 7.93662 8.22760 8.55819 8.91668 9.22802 9.56716 11.03807 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003979 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.245669 B = 7036.003955 C = 8626.870070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.261 3.739 10 N -0.603 5.603 11 C 0.143 3.857 12 C -0.166 4.166 13 C -0.184 4.184 14 C -0.175 4.175 15 C 0.700 3.300 16 O -0.567 6.567 17 N -0.693 5.693 18 C 0.166 3.834 19 C -0.122 4.122 20 C -0.090 4.090 21 C 0.025 3.975 22 O -0.200 6.200 23 C 0.000 4.000 24 C -0.206 4.206 25 C -0.111 4.111 26 C -0.075 4.075 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.205 0.795 41 H 0.156 0.844 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -17.574 2.224 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.142 3.858 10 N -0.337 5.337 11 C 0.018 3.982 12 C -0.186 4.186 13 C -0.221 4.221 14 C -0.213 4.213 15 C 0.401 3.599 16 O -0.442 6.442 17 N -0.343 5.343 18 C 0.069 3.931 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.023 4.023 22 O -0.102 6.102 23 C -0.065 4.065 24 C -0.225 4.225 25 C -0.112 4.112 26 C -0.096 4.096 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.221 0.779 41 H 0.174 0.826 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.673 -17.120 3.005 19.000 hybrid contribution 0.413 0.922 -0.465 1.112 sum 8.085 -16.198 2.541 18.281 Atomic orbital electron populations 1.69917 1.05957 1.27125 1.50364 1.24907 0.94859 0.99133 0.95048 0.86571 0.79536 0.82776 0.78609 1.20273 1.21177 1.20214 1.21412 0.93340 0.90731 1.51187 0.92549 1.19242 0.86770 0.81243 0.98541 1.47548 1.47642 1.36341 1.02163 1.20971 0.94313 0.94979 0.87897 1.22974 1.01643 0.93734 1.00217 1.23013 1.01231 0.95378 1.02489 1.22904 1.03414 1.04256 0.90703 1.15916 0.79526 0.79200 0.85213 1.90917 1.60834 1.62571 1.29920 1.42964 1.48057 1.35783 1.07487 1.17263 0.92274 0.96285 0.87230 1.20599 0.94306 1.01804 0.97579 1.19530 0.98371 1.03033 0.89948 1.19551 0.96099 1.01118 0.85491 1.83976 1.35262 1.67344 1.23640 1.23863 0.82977 1.01472 0.98200 1.22540 1.01312 1.05707 0.92956 1.19790 0.93832 1.02231 0.95363 1.20571 1.00581 0.97635 0.90848 0.92663 0.94680 0.93724 0.88993 0.92285 0.87219 0.89201 0.89096 0.88922 0.88714 0.76214 0.84727 0.85009 0.77853 0.82587 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.26 6.69 5.16 -5.19 -0.03 6.66 16 10 N -0.60 -12.44 2.46 -180.80 -0.44 -12.89 16 11 C 0.14 2.22 5.50 -4.04 -0.02 2.20 16 12 C -0.17 -2.22 6.01 -90.62 -0.54 -2.77 16 13 C -0.18 -1.95 10.18 -26.74 -0.27 -2.23 16 14 C -0.18 -1.86 10.25 -26.73 -0.27 -2.14 16 15 C 0.70 14.72 8.01 -86.93 -0.70 14.02 16 16 O -0.57 -14.42 13.61 5.29 0.07 -14.34 16 17 N -0.69 -11.18 5.23 -14.20 -0.07 -11.25 16 18 C 0.17 2.63 6.28 -83.63 -0.53 2.10 16 19 C -0.12 -1.55 9.93 -39.36 -0.39 -1.94 16 20 C -0.09 -1.11 10.05 -39.50 -0.40 -1.51 16 21 C 0.02 0.35 7.41 -38.48 -0.29 0.07 16 22 O -0.20 -2.62 10.59 3.62 0.04 -2.59 16 23 C 0.00 0.00 11.96 29.24 0.35 0.35 16 24 C -0.21 -2.64 11.14 -37.61 -0.42 -3.06 16 25 C -0.11 -1.73 6.39 -105.16 -0.67 -2.40 16 26 C -0.08 -1.30 8.70 -39.12 -0.34 -1.64 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 31 H 0.06 0.76 6.02 -51.93 -0.31 0.44 16 32 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 5.17 6.39 -40.82 -0.26 4.91 16 38 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.14 2.80 6.41 -52.49 -0.34 2.46 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -34.10 359.07 -9.69 -43.79 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.47 Total: 6.41 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.94 Total: -5.75 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.22 Total: -49.78 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.11 Total: -16.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.10 -9.69 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599905758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.204 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds