Wall clock time and date at job start Tue Mar 31 2020 11:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47260 * 240.00010 * 3 2 1 5 5 H 1.48498 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46852 * 119.99612 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00161 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99670 * 269.99805 * 10 9 7 12 12 C 1.52998 * 109.47295 * 269.99825 * 11 10 9 13 13 C 1.52995 * 117.50022 * 243.62048 * 12 11 10 14 14 C 1.52993 * 60.00359 * 252.51097 * 13 12 11 15 15 C 1.34770 * 120.00353 * 89.99982 * 10 9 7 16 16 O 1.21587 * 119.99852 * 359.97438 * 15 10 9 17 17 N 1.34776 * 120.00268 * 180.02562 * 15 10 9 18 18 C 1.40153 * 120.00287 * 185.30851 * 17 15 10 19 19 C 1.39318 * 119.93648 * 213.32515 * 18 17 15 20 20 C 1.37739 * 120.62294 * 180.02562 * 19 18 17 21 21 C 1.38942 * 120.05627 * 0.02678 * 20 19 18 22 22 O 1.34923 * 133.31744 * 180.02562 * 21 20 19 23 23 C 1.34435 * 110.88498 * 179.97438 * 22 21 20 24 24 C 1.33995 * 110.16116 * 0.02562 * 23 22 21 25 25 C 1.40459 * 119.43360 * 359.97438 * 21 20 19 26 26 C 1.38302 * 119.93502 * 33.34476 * 18 17 15 27 27 H 0.96992 * 119.99804 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 60.00056 * 9 7 2 29 29 H 1.08998 * 109.47305 * 299.99534 * 9 7 2 30 30 H 1.09005 * 109.47548 * 30.00226 * 11 10 9 31 31 H 1.09007 * 109.47340 * 149.99735 * 11 10 9 32 32 H 1.08995 * 115.54886 * 29.33277 * 12 11 10 33 33 H 1.09000 * 117.49899 * 0.02562 * 13 12 11 34 34 H 1.09004 * 117.49952 * 145.02397 * 13 12 11 35 35 H 1.08998 * 117.50115 * 252.51229 * 14 13 12 36 36 H 1.09006 * 117.50099 * 107.48651 * 14 13 12 37 37 H 0.97005 * 120.00155 * 5.29988 * 17 15 10 38 38 H 1.08003 * 119.69042 * 0.02562 * 19 18 17 39 39 H 1.08004 * 119.96856 * 180.02562 * 20 19 18 40 40 H 1.08002 * 124.92227 * 179.97438 * 23 22 21 41 41 H 1.07990 * 126.90549 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.23056 * 359.95804 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.6800 -4.1688 -1.2701 12 6 1.7496 -5.2998 -1.7130 13 6 2.3417 -6.7078 -1.8016 14 6 2.0110 -5.9352 -3.0801 15 6 2.6401 -4.1254 1.1657 16 8 2.2446 -3.6635 2.2186 17 7 3.5163 -5.1495 1.1659 18 6 3.8855 -5.7557 2.3745 19 6 5.1742 -6.2603 2.5340 20 6 5.5520 -6.8593 3.7153 21 6 4.6451 -6.9659 4.7626 22 8 4.7229 -7.4862 6.0050 23 6 3.5556 -7.3462 6.6572 24 6 2.6602 -6.7296 5.8740 25 6 3.3452 -6.4580 4.6044 26 6 2.9695 -5.8523 3.4062 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.6883 -3.3868 -2.0295 31 1 3.6894 -4.5589 -1.1393 32 1 0.7125 -5.2090 -1.3903 33 1 3.3939 -6.8285 -1.5440 34 1 1.6940 -7.5437 -1.5370 35 1 1.1459 -6.2627 -3.6565 36 1 2.8458 -5.5474 -3.6640 37 1 3.8914 -5.4671 0.3296 38 1 5.8839 -6.1810 1.7236 39 1 6.5540 -7.2465 3.8277 40 1 3.3667 -7.6829 7.6658 41 1 1.6399 -6.4816 6.1264 42 1 1.9701 -5.4614 3.2845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599905758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:56 Heat of formation + Delta-G solvation = 19.988544 kcal Electronic energy + Delta-G solvation = -25634.061252 eV Core-core repulsion = 21967.205346 eV Total energy + Delta-G solvation = -3666.855906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.30808 -41.60758 -39.11237 -38.27908 -36.21022 -35.46495 -34.48155 -33.68427 -30.61939 -30.24544 -29.32986 -27.61184 -25.37138 -24.19167 -23.21287 -23.02111 -22.27138 -21.99492 -20.78165 -19.56444 -18.63193 -18.58145 -18.21478 -17.41516 -17.00041 -16.75793 -16.43213 -16.13231 -15.82936 -15.30428 -15.21021 -14.87795 -14.63211 -14.34293 -14.05025 -13.87506 -13.74472 -13.59796 -13.40953 -13.22961 -12.90732 -12.62044 -12.55750 -12.30586 -12.23495 -12.13616 -11.78737 -11.36971 -11.26172 -11.11695 -11.07443 -10.72964 -10.63489 -9.57495 -9.20070 -8.85240 -8.21390 -6.36377 -0.02047 0.29368 1.36285 1.40954 1.46851 1.47700 1.66374 1.93448 2.13437 2.39042 2.77602 2.79298 3.07014 3.11205 3.60170 3.77256 3.82848 3.98054 4.07526 4.10558 4.23246 4.29926 4.31917 4.43107 4.62673 4.67929 4.76985 4.82100 4.85168 4.95432 5.03822 5.05709 5.17746 5.27340 5.28800 5.30454 5.31677 5.33104 5.49734 5.54989 5.78234 5.80512 6.05726 6.07889 6.22038 6.71993 7.03453 7.30604 7.62087 8.85081 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003979 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.245669 B = 7036.003955 C = 8626.870070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.281 3.719 10 N -0.607 5.607 11 C 0.143 3.857 12 C -0.196 4.196 13 C -0.167 4.167 14 C -0.156 4.156 15 C 0.695 3.305 16 O -0.622 6.622 17 N -0.670 5.670 18 C 0.147 3.853 19 C -0.114 4.114 20 C -0.076 4.076 21 C 0.011 3.989 22 O -0.201 6.201 23 C 0.029 3.971 24 C -0.244 4.244 25 C -0.136 4.136 26 C -0.109 4.109 27 H 0.267 0.733 28 H 0.027 0.973 29 H -0.004 1.004 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.418 0.582 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.256 0.744 41 H 0.163 0.837 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 -19.251 1.833 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.159 3.841 10 N -0.340 5.340 11 C 0.020 3.980 12 C -0.216 4.216 13 C -0.204 4.204 14 C -0.194 4.194 15 C 0.397 3.603 16 O -0.502 6.502 17 N -0.321 5.321 18 C 0.052 3.948 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.036 4.036 22 O -0.102 6.102 23 C -0.035 4.035 24 C -0.263 4.263 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.014 0.986 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.259 0.741 38 H 0.192 0.808 39 H 0.190 0.810 40 H 0.272 0.728 41 H 0.180 0.820 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.304 -18.864 2.563 22.141 hybrid contribution -0.736 1.329 -0.244 1.539 sum 10.568 -17.535 2.319 20.604 Atomic orbital electron populations 1.70045 1.07538 1.28201 1.50971 1.25824 0.95765 1.02927 0.94420 0.85491 0.78330 0.78184 0.78933 1.18247 1.20313 1.20643 1.21688 0.93278 0.91946 1.51292 0.92863 1.18634 0.87110 0.82666 0.95675 1.47358 1.46952 1.35498 1.04220 1.21209 0.96335 0.95348 0.85107 1.22688 0.99879 0.95205 1.03787 1.23144 1.02323 0.93234 1.01659 1.23023 1.04129 1.02383 0.89829 1.16091 0.79908 0.79924 0.84331 1.90879 1.62808 1.64536 1.31931 1.42549 1.46634 1.34192 1.08754 1.17567 0.93640 0.97083 0.86560 1.20948 0.93089 1.00408 0.98930 1.20044 0.99542 1.01132 0.88721 1.19909 0.95846 1.01351 0.86505 1.84002 1.36138 1.66964 1.23118 1.24766 0.81184 0.98441 0.99125 1.22811 1.02568 1.08083 0.92869 1.20111 0.95501 1.02432 0.95678 1.20405 0.99653 1.00061 0.92963 0.92411 0.95539 0.98577 0.89939 0.88869 0.90328 0.86877 0.88782 0.88250 0.86900 0.74126 0.80766 0.81013 0.72799 0.81973 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.28 15.43 5.16 85.63 0.44 15.87 16 10 N -0.61 -26.42 2.46 -844.20 -2.07 -28.49 16 11 C 0.14 4.43 5.50 86.38 0.48 4.90 16 12 C -0.20 -5.25 6.01 -10.80 -0.06 -5.32 16 13 C -0.17 -3.17 10.18 30.59 0.31 -2.85 16 14 C -0.16 -2.99 10.25 30.59 0.31 -2.67 16 15 C 0.70 30.93 8.01 179.06 1.43 32.37 16 16 O -0.62 -34.35 13.61 -3.99 -0.05 -34.41 16 17 N -0.67 -21.72 5.23 -317.10 -1.66 -23.38 16 18 C 0.15 4.68 6.28 38.09 0.24 4.92 16 19 C -0.11 -2.58 9.93 22.41 0.22 -2.35 16 20 C -0.08 -1.64 10.05 22.32 0.22 -1.41 16 21 C 0.01 0.30 7.41 22.98 0.17 0.48 16 22 O -0.20 -4.74 10.59 -9.96 -0.11 -4.85 16 23 C 0.03 0.55 11.96 66.85 0.80 1.35 16 24 C -0.24 -6.34 11.14 23.54 0.26 -6.08 16 25 C -0.14 -4.37 6.39 -20.21 -0.13 -4.50 16 26 C -0.11 -4.07 8.70 22.57 0.20 -3.87 16 27 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 29 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 30 H 0.08 2.69 8.07 -2.38 -0.02 2.68 16 31 H 0.09 2.19 6.02 -2.38 -0.01 2.18 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 1.63 7.91 -2.39 -0.02 1.61 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.42 10.03 6.39 -92.70 -0.59 9.44 16 38 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.26 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.16 3.78 8.06 -2.92 -0.02 3.76 16 42 H 0.10 4.58 6.41 -2.91 -0.02 4.56 16 Total: -1.00 -81.76 359.07 4.48 -77.29 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.46 Total: 22.46 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.60 Total: 0.36 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.45 Total: -108.33 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.16 Total: -39.26 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -81.76 4.48 -77.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599905758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.276 kcal (2) G-P(sol) polarization free energy of solvation -81.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds