Wall clock time and date at job start Tue Mar 31 2020 11:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48505 * 109.46842 * 269.99955 * 3 2 1 5 5 H 1.48496 * 109.47180 * 29.99538 * 3 2 1 6 6 H 1.48502 * 109.47252 * 149.99915 * 3 2 1 7 7 C 1.37876 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00183 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47423 * 179.97438 * 9 7 2 11 11 N 1.40042 * 119.86950 * 269.98009 * 10 9 7 12 12 C 1.34656 * 120.29500 * 158.65368 * 11 10 9 13 13 O 1.21282 * 119.96929 * 181.17449 * 12 11 10 14 14 C 1.50868 * 120.05499 * 1.17849 * 12 11 10 15 15 C 1.52830 * 109.32455 * 154.44815 * 14 12 11 16 16 C 1.53323 * 108.31119 * 68.68861 * 15 14 12 17 17 C 1.52722 * 108.38383 * 70.05330 * 16 15 14 18 18 C 1.50629 * 110.61624 * 309.15063 * 17 16 15 19 19 C 1.38924 * 117.72642 * 197.19789 * 18 17 16 20 20 C 1.37940 * 120.54588 * 180.45394 * 19 18 17 21 21 C 1.38265 * 119.77634 * 359.94068 * 20 19 18 22 22 C 1.37939 * 119.76697 * 359.87705 * 21 20 19 23 23 C 1.37647 * 122.60737 * 17.41048 * 18 17 16 24 24 C 1.53164 * 109.10810 * 34.84220 * 14 12 11 25 25 C 1.34683 * 119.87348 * 89.99616 * 10 9 7 26 26 O 1.21278 * 119.97842 * 1.19256 * 25 10 9 27 27 H 0.97005 * 120.00167 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47226 * 59.99583 * 9 7 2 29 29 H 1.09002 * 109.46906 * 300.00031 * 9 7 2 30 30 H 0.97001 * 119.84850 * 338.67134 * 11 10 9 31 31 H 1.09003 * 109.69884 * 188.39284 * 15 14 12 32 32 H 1.09001 * 109.70150 * 308.93868 * 15 14 12 33 33 H 1.09000 * 109.67950 * 189.77141 * 16 15 14 34 34 H 1.08997 * 109.67955 * 310.28627 * 16 15 14 35 35 H 1.09001 * 109.25189 * 69.44681 * 17 16 15 36 36 H 1.08996 * 109.24866 * 188.89967 * 17 16 15 37 37 H 1.07993 * 119.73124 * 0.45239 * 19 18 17 38 38 H 1.08001 * 120.10786 * 180.21953 * 20 19 18 39 39 H 1.08001 * 120.11578 * 179.85216 * 21 20 19 40 40 H 1.07992 * 119.73163 * 180.09604 * 22 21 20 41 41 H 1.09001 * 109.51489 * 70.20116 * 24 14 12 42 42 H 1.09003 * 109.51561 * 190.35885 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 7 2.6557 -4.1431 -1.2139 12 6 3.8074 -4.8391 -1.2637 13 8 4.2049 -5.2776 -2.3223 14 6 4.6035 -5.0738 -0.0039 15 6 5.4445 -6.3397 -0.1656 16 6 6.5334 -6.0645 -1.2093 17 6 7.5414 -5.0877 -0.6077 18 6 6.8375 -3.8875 -0.0307 19 6 7.5972 -2.7521 0.2216 20 6 7.0137 -1.6232 0.7584 21 6 5.6615 -1.6203 1.0470 22 6 4.9048 -2.7454 0.7937 23 6 5.4906 -3.8830 0.2531 24 6 3.6393 -5.2505 1.1730 25 6 2.6388 -4.1226 1.1684 26 8 2.2265 -3.6739 2.2170 27 1 -0.4851 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.1375 -4.0084 -2.0227 31 1 5.9061 -6.5983 0.7874 32 1 4.8115 -7.1609 -0.5018 33 1 7.0356 -6.9961 -1.4701 34 1 6.0847 -5.6273 -2.1013 35 1 8.1014 -5.5896 0.1813 36 1 8.2315 -4.7594 -1.3849 37 1 8.6532 -2.7531 -0.0043 38 1 7.6103 -0.7432 0.9484 39 1 5.1995 -0.7403 1.4696 40 1 3.8484 -2.7419 1.0179 41 1 3.1160 -6.2017 1.0754 42 1 4.1994 -5.2365 2.1079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:39 Heat of formation + Delta-G solvation = -21.970657 kcal Electronic energy + Delta-G solvation = -27886.316289 eV Core-core repulsion = 24217.640896 eV Total energy + Delta-G solvation = -3668.675393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.95727 -40.44759 -39.91144 -37.53148 -36.85719 -35.35410 -34.54983 -32.43852 -31.15846 -31.00005 -29.38363 -27.98788 -25.26396 -25.07712 -23.79115 -23.57304 -22.55743 -21.16479 -19.40125 -19.12825 -18.65535 -18.28636 -17.78280 -16.78013 -16.68335 -16.57273 -16.34114 -15.96384 -15.78752 -15.11475 -14.97853 -14.83862 -14.46873 -14.30697 -14.01437 -13.83708 -13.60141 -13.52976 -13.24357 -13.12045 -13.02160 -12.73345 -12.65886 -12.38115 -12.29158 -12.14102 -12.06046 -11.61566 -11.34739 -11.25898 -10.89712 -10.72686 -10.64845 -9.69932 -9.53738 -9.22347 -8.28256 -6.41781 0.27398 0.44179 0.89895 1.13698 1.33126 1.34512 1.44727 1.67484 2.31532 2.41992 2.81059 3.02792 3.28193 3.41375 3.53608 3.64916 3.91672 4.02939 4.18999 4.22755 4.29370 4.39082 4.43441 4.54009 4.63025 4.68937 4.78506 4.87146 4.95369 4.96199 5.01432 5.07695 5.10674 5.20446 5.24652 5.33269 5.53348 5.56527 5.63377 5.65942 5.70022 5.83219 5.90195 6.08466 6.59402 6.65586 6.74408 7.20583 7.32415 8.78128 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.006285 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.599097 B = 4453.762363 C = 5380.886963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.258 3.742 10 N -0.405 5.405 11 N -0.503 5.503 12 C 0.529 3.471 13 O -0.537 6.537 14 C -0.023 4.023 15 C -0.090 4.090 16 C -0.134 4.134 17 C -0.077 4.077 18 C -0.062 4.062 19 C -0.127 4.127 20 C -0.112 4.112 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.095 4.095 24 C -0.127 4.127 25 C 0.512 3.488 26 O -0.568 6.568 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.425 0.575 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.157 0.843 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 -12.296 -0.766 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.139 3.861 10 N -0.231 5.231 11 N -0.252 5.252 12 C 0.316 3.684 13 O -0.412 6.412 14 C -0.026 4.026 15 C -0.127 4.127 16 C -0.171 4.171 17 C -0.113 4.113 18 C -0.062 4.062 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.095 4.095 24 C -0.167 4.167 25 C 0.303 3.697 26 O -0.446 6.446 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.174 0.826 38 H 0.162 0.838 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.699 -12.217 -0.617 19.901 hybrid contribution -0.996 1.894 -0.258 2.156 sum 14.702 -10.322 -0.875 17.985 Atomic orbital electron populations 1.70007 1.07226 1.28242 1.50586 1.25655 0.95640 1.02381 0.94413 0.85618 0.78859 0.79190 0.78534 1.19714 1.20430 1.19240 1.21748 0.94037 0.91111 1.51612 0.91551 1.19261 0.87013 0.81899 0.97960 1.48003 1.45237 1.33390 0.96474 1.45403 1.23609 1.53246 1.02989 1.20802 0.79030 0.76982 0.91608 1.90656 1.66547 1.52127 1.31862 1.19719 0.94383 0.97628 0.90875 1.21567 0.96945 0.92423 1.01762 1.21843 0.96030 1.00343 0.98902 1.20596 0.97549 0.92351 1.00816 1.20014 0.91903 0.97230 0.97089 1.21485 1.01131 0.92105 0.99723 1.21396 0.93921 0.99560 0.98142 1.21155 0.95542 0.97906 1.01700 1.22056 1.01107 0.94003 0.98630 1.19196 0.94179 0.93691 1.02469 1.22186 0.95356 0.98040 1.01111 1.20915 0.82586 0.84479 0.81764 1.90764 1.60485 1.63097 1.30216 0.92278 0.94617 0.94855 0.73110 0.87980 0.89646 0.88803 0.91172 0.88016 0.89425 0.82574 0.83833 0.87902 0.85950 0.84434 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.26 13.29 21.45 0.28 -52.97 16 2 C 0.02 1.07 5.46 84.66 0.46 1.53 16 3 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -29.90 8.92 25.60 0.23 -29.67 16 8 H 0.07 3.63 5.73 -2.91 -0.02 3.61 16 9 C 0.26 13.08 5.44 85.63 0.47 13.54 16 10 N -0.41 -16.94 2.68 -466.83 -1.25 -18.19 16 11 N -0.50 -18.07 6.27 -173.53 -1.09 -19.16 16 12 C 0.53 17.36 6.63 87.73 0.58 17.94 16 13 O -0.54 -18.45 14.51 -3.04 -0.04 -18.49 16 14 C -0.02 -0.63 0.52 -53.62 -0.03 -0.66 16 15 C -0.09 -1.75 4.47 30.65 0.14 -1.61 16 16 C -0.13 -2.61 5.80 30.61 0.18 -2.43 16 17 C -0.08 -1.36 5.67 29.73 0.17 -1.20 16 18 C -0.06 -1.60 5.74 -19.86 -0.11 -1.71 16 19 C -0.13 -3.04 9.61 22.36 0.21 -2.82 16 20 C -0.11 -3.17 10.05 22.21 0.22 -2.94 16 21 C -0.14 -5.30 9.91 22.21 0.22 -5.08 16 22 C -0.14 -5.39 7.56 22.36 0.17 -5.22 16 23 C -0.09 -2.98 4.68 -19.84 -0.09 -3.07 16 24 C -0.13 -3.59 4.71 29.92 0.14 -3.45 16 25 C 0.51 20.58 4.43 87.69 0.39 20.97 16 26 O -0.57 -27.56 16.39 -3.02 -0.05 -27.61 16 27 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 28 H 0.04 1.81 8.13 -2.38 -0.02 1.79 16 29 H 0.03 1.90 7.40 -2.39 -0.02 1.89 16 30 H 0.43 14.30 8.87 -213.36 -1.89 12.41 16 31 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 32 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.85 5.30 -2.39 -0.01 1.84 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.16 2.55 8.05 -2.91 -0.02 2.53 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.10 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.12 5.46 2.09 -2.91 -0.01 5.45 16 41 H 0.14 2.95 8.11 -2.39 -0.02 2.93 16 42 H 0.13 3.25 8.11 -2.39 -0.02 3.23 16 Total: -1.00 -69.71 330.38 2.40 -67.31 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.82 Total: 28.98 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 3.34 Total: -5.88 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -2.05 Total: -90.32 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.09 Total: -46.10 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.71 2.40 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.337 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds