Wall clock time and date at job start Tue Mar 31 2020 10:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.50696 * 109.46923 * 239.99966 * 2 1 3 5 5 H 1.08004 * 119.99967 * 239.99721 * 4 2 1 6 6 C 1.37875 * 120.00542 * 60.00269 * 4 2 1 7 7 N 1.31520 * 119.99521 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46904 * 90.00224 * 8 6 4 10 10 H 1.48498 * 109.47118 * 209.99881 * 8 6 4 11 11 H 1.48499 * 109.47134 * 330.00401 * 8 6 4 12 12 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 13 13 O 1.42905 * 109.47264 * 299.99852 * 12 2 1 14 14 C 1.34948 * 117.00143 * 180.02562 * 13 12 2 15 15 O 1.21668 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.46134 * 119.99913 * 179.97438 * 14 13 12 17 17 O 1.34973 * 126.19464 * 359.68990 * 16 14 13 18 18 C 1.33910 * 109.70892 * 179.85666 * 17 16 14 19 19 C 1.34798 * 109.36691 * 0.41240 * 18 17 16 20 20 C 1.38890 * 126.19391 * 179.97438 * 16 14 13 21 21 C 1.48156 * 126.90557 * 0.02562 * 20 16 14 22 22 C 1.39468 * 120.13146 * 309.71753 * 21 20 16 23 23 C 1.37983 * 119.85868 * 179.72249 * 22 21 20 24 24 C 1.38343 * 120.13805 * 0.55443 * 23 22 21 25 25 C 1.38342 * 120.26649 * 359.72776 * 24 23 22 26 26 C 1.37986 * 120.13368 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47529 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 32 32 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 33 33 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47289 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47261 * 59.99941 * 12 2 1 36 36 H 1.07995 * 125.31461 * 180.12016 * 18 17 16 37 37 H 1.08000 * 126.43585 * 179.73080 * 19 18 17 38 38 H 1.07999 * 120.06765 * 0.02562 * 22 21 20 39 39 H 1.08009 * 119.92853 * 180.28092 * 23 22 21 40 40 H 1.07995 * 119.86651 * 179.73747 * 24 23 22 41 41 H 1.08007 * 119.93739 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.06522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 6 2.0399 -0.7213 1.2492 13 8 1.5636 -0.0476 2.4161 14 6 1.9266 -0.5601 3.6105 15 8 2.6284 -1.5528 3.6585 16 6 1.4766 0.0772 4.8462 17 8 0.7041 1.1801 4.9387 18 6 0.4901 1.4748 6.2273 19 6 1.1265 0.5748 7.0033 20 6 1.7711 -0.3392 6.1381 21 6 2.5958 -1.5057 6.5306 22 6 2.3459 -2.7593 5.9729 23 6 3.1212 -3.8407 6.3383 24 6 4.1372 -3.6857 7.2643 25 6 4.3862 -2.4458 7.8253 26 6 3.6217 -1.3556 7.4634 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7088 1.1613 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2492 36 1 -0.0965 2.3065 6.5884 37 1 1.1412 0.5555 8.0830 38 1 1.5503 -2.8824 5.2530 39 1 2.9315 -4.8111 5.9037 40 1 4.7386 -4.5359 7.5502 41 1 5.1810 -2.3307 8.5475 42 1 3.8172 -0.3882 7.9018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:51 Heat of formation + Delta-G solvation = -62.727772 kcal Electronic energy + Delta-G solvation = -25654.285129 eV Core-core repulsion = 21951.549623 eV Total energy + Delta-G solvation = -3702.735505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.72513 -41.40973 -39.91552 -38.41110 -36.73255 -34.86698 -33.31467 -32.00709 -31.72505 -30.54384 -27.73406 -27.62448 -27.18980 -25.08063 -23.83929 -23.48007 -22.22693 -21.06311 -20.78978 -19.62709 -18.28721 -17.88419 -17.80225 -17.45616 -17.01753 -16.83092 -16.61480 -15.80158 -15.71877 -15.08909 -14.76418 -14.75109 -14.40160 -14.29213 -14.11463 -13.95917 -13.73008 -13.39498 -13.36474 -13.18150 -12.86757 -12.64786 -12.37687 -12.19925 -12.15045 -12.06248 -11.96729 -11.76731 -11.31233 -11.26611 -11.14233 -10.77732 -10.42672 -9.97658 -9.82272 -9.39308 -8.06236 -6.24866 -0.48877 0.43025 0.51925 1.30130 1.33568 1.42958 1.44929 1.54223 1.74453 2.08789 2.45102 2.85522 3.17123 3.46550 3.73011 3.83702 4.08557 4.09277 4.19886 4.21343 4.25397 4.30264 4.46753 4.55851 4.61616 4.68461 4.79445 4.84518 4.99968 5.03073 5.12852 5.14999 5.17767 5.25317 5.28115 5.44888 5.53882 5.57483 5.59095 5.60208 5.61746 5.80732 6.02240 6.06566 6.13928 6.33710 6.61803 6.79858 7.43213 8.93913 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003333 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.207969 B = 8398.168504 C = 9580.353702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.534 4.534 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.901 5.901 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.272 1.272 12 C 0.095 3.905 13 O -0.341 6.341 14 C 0.533 3.467 15 O -0.505 6.505 16 C -0.097 4.097 17 O -0.163 6.163 18 C 0.031 3.969 19 C -0.218 4.218 20 C -0.035 4.035 21 C -0.058 4.058 22 C -0.088 4.088 23 C -0.136 4.136 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.102 4.102 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.196 0.804 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -1.247 24.122 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.572 4.572 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.021 3.979 13 O -0.257 6.257 14 C 0.379 3.621 15 O -0.397 6.397 16 C -0.147 4.147 17 O -0.058 6.058 18 C -0.039 4.039 19 C -0.236 4.236 20 C -0.037 4.037 21 C -0.059 4.059 22 C -0.106 4.106 23 C -0.154 4.154 24 C -0.131 4.131 25 C -0.145 4.145 26 C -0.120 4.120 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.281 0.719 37 H 0.213 0.787 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.528 -1.269 23.660 23.743 hybrid contribution 0.229 -0.627 -1.346 1.503 sum 1.757 -1.897 22.313 22.463 Atomic orbital electron populations 1.21621 0.97165 0.98623 1.00181 1.18273 0.93573 0.93214 0.88719 1.21619 0.97784 0.98017 1.00179 1.21188 1.32455 1.12543 0.91038 0.93089 1.25541 0.94913 0.95541 1.01245 1.69945 1.36712 1.23302 1.23931 0.85605 0.78738 0.78394 0.79175 1.20181 1.20586 1.19723 1.22967 0.97735 0.95495 0.81679 1.86261 1.69169 1.55653 1.14637 1.19626 0.77569 0.81654 0.83223 1.90917 1.36246 1.25005 1.87511 1.20923 1.07257 0.94156 0.92358 1.84179 1.53789 1.37028 1.30771 1.25489 0.99197 1.01028 0.78158 1.22183 1.02908 0.96048 1.02481 1.19860 0.97551 0.96212 0.90059 1.18238 0.97345 0.90954 0.99320 1.21149 0.99476 0.92874 0.97109 1.21298 0.96510 0.98880 0.98743 1.21591 0.96904 0.98745 0.95827 1.21431 1.00096 0.92170 1.00777 1.21409 0.94052 1.00396 0.96117 0.95419 0.91558 0.96010 0.96045 0.91547 0.95427 0.92759 0.93212 0.93060 0.71919 0.78670 0.88401 0.84936 0.83285 0.82700 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.10 71.98 0.58 -5.36 16 2 C 0.06 3.21 0.58 -52.93 -0.03 3.17 16 3 C -0.12 -5.96 8.10 71.98 0.58 -5.38 16 4 C -0.53 -29.42 8.01 25.60 0.21 -29.22 16 5 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -49.95 9.35 21.45 0.20 -49.75 16 8 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.09 4.47 4.18 71.98 0.30 4.77 16 13 O -0.34 -15.05 8.78 -57.29 -0.50 -15.55 16 14 C 0.53 21.42 7.89 69.87 0.55 21.97 16 15 O -0.51 -21.43 13.20 19.29 0.25 -21.18 16 16 C -0.10 -3.21 7.24 24.48 0.18 -3.03 16 17 O -0.16 -4.62 10.65 -5.25 -0.06 -4.67 16 18 C 0.03 0.50 12.02 67.03 0.81 1.31 16 19 C -0.22 -3.81 10.81 22.26 0.24 -3.57 16 20 C -0.03 -0.93 5.69 -19.71 -0.11 -1.05 16 21 C -0.06 -1.58 5.28 -20.05 -0.11 -1.69 16 22 C -0.09 -2.57 7.65 22.51 0.17 -2.40 16 23 C -0.14 -3.30 10.03 22.23 0.22 -3.08 16 24 C -0.11 -2.17 10.04 22.32 0.22 -1.95 16 25 C -0.13 -2.28 10.03 22.23 0.22 -2.05 16 26 C -0.10 -2.15 9.74 22.50 0.22 -1.93 16 27 H 0.03 1.28 7.68 -2.39 -0.02 1.26 16 28 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 32 H 0.03 1.28 7.68 -2.39 -0.02 1.26 16 33 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.05 2.42 8.13 -2.38 -0.02 2.40 16 36 H 0.27 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.10 3.21 7.35 -2.91 -0.02 3.19 16 39 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -68.56 355.18 7.64 -60.92 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.02 Total: 12.55 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 4.70 Total: -27.54 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.20 Total: -49.75 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.30 Total: -41.41 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.56 7.64 -60.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.808 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds