Wall clock time and date at job start Tue Mar 31 2020 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34442 * 124.92501 * 2 1 4 4 C 1.34808 * 110.88747 * 180.02562 * 3 2 1 5 5 C 1.38947 * 133.48983 * 180.02562 * 4 3 2 6 6 C 1.37846 * 119.81714 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.68531 * 359.97438 * 6 5 4 8 8 C 1.36740 * 120.41660 * 0.02562 * 7 6 5 9 9 C 1.39412 * 119.71887 * 359.67716 * 8 7 6 10 10 C 1.34000 * 124.91809 * 180.02562 * 2 1 3 11 11 C 1.50701 * 126.91038 * 359.94952 * 10 2 1 12 12 C 1.50697 * 109.47071 * 90.02900 * 11 10 2 13 13 O 1.20828 * 119.99936 * 5.25559 * 12 11 10 14 14 O 1.34222 * 120.00178 * 185.25967 * 12 11 10 15 15 C 1.45202 * 117.00136 * 185.12615 * 14 12 11 16 16 C 1.53000 * 109.46972 * 184.78412 * 15 14 12 17 17 C 1.50693 * 115.55578 * 305.20749 * 16 15 14 18 18 H 1.08003 * 120.00224 * 278.64833 * 17 16 15 19 19 C 1.37874 * 120.00252 * 98.36618 * 17 16 15 20 20 N 1.31519 * 120.00147 * 174.87791 * 19 17 16 21 21 Si 1.86796 * 120.00010 * 354.88084 * 19 17 16 22 22 H 1.48499 * 109.47280 * 94.74518 * 21 19 17 23 23 H 1.48507 * 109.47190 * 214.74372 * 21 19 17 24 24 H 1.48504 * 109.47089 * 334.74069 * 21 19 17 25 25 C 1.53003 * 117.51485 * 90.90798 * 16 15 14 26 26 C 1.52999 * 117.49729 * 159.53557 * 16 15 14 27 27 H 1.09010 * 109.46682 * 269.97904 * 1 2 3 28 28 H 1.09005 * 109.47090 * 29.97235 * 1 2 3 29 29 H 1.08993 * 109.47818 * 149.98102 * 1 2 3 30 30 H 1.07996 * 120.09193 * 359.97218 * 5 4 3 31 31 H 1.07999 * 119.66223 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.79354 * 180.02562 * 7 6 5 33 33 H 1.08006 * 120.14192 * 179.97438 * 8 7 6 34 34 H 1.09006 * 109.46750 * 330.02720 * 11 10 2 35 35 H 1.09005 * 109.47003 * 210.02909 * 11 10 2 36 36 H 1.08999 * 109.46892 * 64.79293 * 15 14 12 37 37 H 1.08992 * 109.47422 * 304.78647 * 15 14 12 38 38 H 0.97000 * 120.00027 * 180.02562 * 20 19 17 39 39 H 1.09006 * 117.49799 * 214.96785 * 25 16 15 40 40 H 1.08994 * 117.50272 * 359.97438 * 25 16 15 41 41 H 1.09006 * 117.50181 * 359.97438 * 26 16 15 42 42 H 1.08996 * 117.50383 * 144.97457 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5845 0.7753 -0.0006 5 6 4.7567 1.5213 -0.0004 6 6 5.9771 0.8803 -0.0006 7 6 6.0491 -0.5052 -0.0005 8 6 4.9074 -1.2578 -0.0007 9 6 3.6641 -0.6273 0.0058 10 6 2.2740 -1.0988 -0.0005 11 6 1.8040 -2.5306 -0.0001 12 6 1.6470 -3.0082 -1.4207 13 8 1.9815 -2.2962 -2.3379 14 8 1.1357 -4.2244 -1.6673 15 6 1.1192 -4.6645 -3.0509 16 6 0.3979 -6.0102 -3.1494 17 6 0.9348 -7.1021 -2.2604 18 1 1.8043 -7.6666 -2.5633 19 6 0.3194 -7.3767 -1.0575 20 7 0.7245 -8.3938 -0.3287 21 14 -1.0897 -6.3042 -0.4630 22 1 -2.3815 -6.9165 -0.8649 23 1 -1.0350 -6.1905 1.0167 24 1 -0.9727 -4.9531 -1.0679 25 6 -1.1100 -5.9868 -3.4075 26 6 -0.1504 -6.4193 -4.5179 27 1 -0.3633 -0.0004 1.0278 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5141 30 1 4.7119 2.6003 0.0000 31 1 6.8867 1.4626 -0.0008 32 1 7.0129 -0.9925 -0.0002 33 1 4.9687 -2.3361 -0.0010 34 1 0.8452 -2.5981 0.5141 35 1 2.5365 -3.1533 0.5137 36 1 2.1427 -4.7738 -3.4095 37 1 0.5973 -3.9271 -3.6606 38 1 0.2913 -8.5872 0.5174 39 1 -1.7137 -6.7612 -2.9341 40 1 -1.5886 -5.0126 -3.5067 41 1 0.0022 -5.7294 -5.3481 42 1 -0.1225 -7.4780 -4.7754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767990773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:41 Heat of formation + Delta-G solvation = -29.764086 kcal Electronic energy + Delta-G solvation = -25831.535164 eV Core-core repulsion = 22130.229071 eV Total energy + Delta-G solvation = -3701.306093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.59150 -39.85209 -37.97995 -37.20768 -35.48737 -34.34134 -32.06425 -31.33837 -30.72996 -29.53973 -27.27258 -26.35899 -25.23585 -23.04546 -21.96390 -21.76935 -21.21957 -19.64197 -19.11423 -17.30777 -17.15228 -16.98437 -16.61406 -16.26291 -15.78969 -15.48183 -15.38963 -14.74975 -14.20872 -13.91385 -13.82521 -13.63816 -13.29925 -13.12605 -12.89624 -12.66073 -12.50087 -12.31591 -12.26319 -12.04084 -11.93011 -11.58203 -11.19621 -10.96519 -10.89202 -10.45365 -10.26672 -10.15476 -9.97578 -9.85258 -9.45188 -9.12394 -8.69113 -8.55679 -8.51153 -8.12203 -6.09557 -4.13988 0.82278 1.28353 2.11883 2.58862 2.66122 3.20633 3.37778 3.48228 3.57311 3.69141 4.27924 4.47388 4.49295 4.73572 4.80765 4.85157 4.91241 5.04124 5.17982 5.19218 5.24455 5.28730 5.37543 5.47233 5.50337 5.55142 5.62885 5.66819 5.86107 5.88775 5.98863 6.10599 6.14563 6.18181 6.28472 6.36416 6.38164 6.39281 6.57967 6.61307 6.83109 7.01638 7.09728 7.18326 7.70573 8.32573 8.46249 8.90676 9.54632 11.01611 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.003700 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.082636 B = 7565.676796 C = 7805.869472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.049 3.951 3 O -0.191 6.191 4 C 0.050 3.950 5 C -0.108 4.108 6 C -0.099 4.099 7 C -0.135 4.135 8 C -0.068 4.068 9 C -0.108 4.108 10 C -0.162 4.162 11 C -0.046 4.046 12 C 0.452 3.548 13 O -0.516 6.516 14 O -0.322 6.322 15 C 0.111 3.889 16 C -0.003 4.003 17 C -0.489 4.489 18 H 0.077 0.923 19 C 0.085 3.915 20 N -0.898 5.898 21 Si 0.885 3.115 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.242 1.242 25 C -0.201 4.201 26 C -0.170 4.170 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 18.247 2.743 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 O -0.093 6.093 4 C 0.003 3.997 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.153 4.153 8 C -0.086 4.086 9 C -0.108 4.108 10 C -0.163 4.163 11 C -0.083 4.083 12 C 0.295 3.705 13 O -0.406 6.406 14 O -0.237 6.237 15 C 0.037 3.963 16 C -0.004 4.004 17 C -0.526 4.526 18 H 0.095 0.905 19 C -0.118 4.118 20 N -0.535 5.535 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.166 1.166 25 C -0.238 4.238 26 C -0.208 4.208 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.874 18.587 2.608 19.165 hybrid contribution -0.649 0.321 0.233 0.760 sum 3.225 18.908 2.841 19.390 Atomic orbital electron populations 1.20490 0.84676 1.04762 1.03992 1.22053 0.93779 0.83203 1.00774 1.83925 1.15050 1.33695 1.76637 1.19539 0.83201 0.93407 1.03551 1.19889 0.88082 0.99548 1.05127 1.20889 0.96375 0.94657 0.99737 1.20767 0.98346 0.93836 1.02396 1.20355 0.90185 1.00343 0.97719 1.19699 0.93532 0.92917 1.04694 1.20143 0.91149 0.94230 1.10817 1.19601 1.04806 0.91455 0.92461 1.23494 0.74294 0.80756 0.91988 1.90619 1.46639 1.56582 1.46767 1.86726 1.72322 1.31829 1.32803 1.22781 1.00748 0.95118 0.77648 1.19378 0.91286 0.93067 0.96633 1.20136 1.15024 1.15062 1.02350 0.90473 1.24959 0.96861 0.94113 0.95896 1.69913 1.42351 1.27592 1.13650 0.86795 0.81524 0.83370 0.76953 1.21575 1.22545 1.16554 1.22991 0.94848 1.01149 1.04814 1.22903 1.05121 1.01136 0.91593 0.89260 0.89905 0.89016 0.85238 0.84912 0.85325 0.85443 0.86985 0.86404 0.91757 0.93459 0.92627 0.89183 0.90685 0.90783 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.00 36.01 0.36 -0.48 16 2 C 0.05 0.68 7.23 -35.80 -0.26 0.42 16 3 O -0.19 -2.76 10.58 3.93 0.04 -2.72 16 4 C 0.05 0.71 7.42 -38.47 -0.29 0.43 16 5 C -0.11 -1.23 10.07 -39.46 -0.40 -1.62 16 6 C -0.10 -0.98 10.01 -39.54 -0.40 -1.38 16 7 C -0.14 -1.47 9.98 -39.94 -0.40 -1.87 16 8 C -0.07 -0.90 10.05 -39.69 -0.40 -1.30 16 9 C -0.11 -1.61 6.38 -105.16 -0.67 -2.28 16 10 C -0.16 -2.43 4.85 -102.66 -0.50 -2.93 16 11 C -0.05 -0.68 5.90 -29.04 -0.17 -0.85 16 12 C 0.45 8.51 7.94 36.00 0.29 8.80 16 13 O -0.52 -10.72 15.70 -18.75 -0.29 -11.01 16 14 O -0.32 -6.89 7.44 -39.24 -0.29 -7.18 16 15 C 0.11 2.36 5.45 37.16 0.20 2.56 16 16 C 0.00 -0.06 1.39 -155.66 -0.22 -0.28 16 17 C -0.49 -13.39 9.22 -34.44 -0.32 -13.71 16 18 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 19 C 0.08 2.37 5.46 -17.82 -0.10 2.27 16 20 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 21 Si 0.88 21.38 23.62 -169.99 -4.01 17.37 16 22 H -0.29 -6.93 6.99 56.52 0.39 -6.53 16 23 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.24 -5.49 5.30 56.52 0.30 -5.19 16 25 C -0.20 -4.23 7.15 -26.73 -0.19 -4.42 16 26 C -0.17 -3.37 9.95 -26.73 -0.27 -3.64 16 27 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.97 7.68 -51.93 -0.40 0.57 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.43 7.72 -51.93 -0.40 1.03 16 35 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 2.00 6.16 -51.93 -0.32 1.68 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -33.31 354.22 -8.01 -41.32 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.85 Total: 3.24 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.72 Total: -20.28 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.77 Total: -26.07 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.54 Total: -20.91 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.01 Total: 17.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.31 -8.01 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767990773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.554 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds