Wall clock time and date at job start Tue Mar 31 2020 10:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34225 * 125.42505 * 2 1 4 4 C 1.33630 * 110.91698 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.80282 * 179.97438 * 4 3 2 6 6 C 1.36493 * 108.39071 * 0.02562 * 4 3 2 7 7 C 1.47224 * 127.20518 * 180.02562 * 6 4 3 8 8 O 1.21537 * 120.00401 * 89.97397 * 7 6 4 9 9 O 1.34770 * 119.99771 * 269.97512 * 7 6 4 10 10 C 1.45200 * 117.00024 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47189 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.75250 * 269.72457 * 11 10 9 13 13 C 1.37610 * 120.25108 * 179.72000 * 12 11 10 14 14 C 1.40715 * 119.74540 * 0.57275 * 13 12 11 15 15 C 1.41400 * 120.24781 * 179.68025 * 14 13 12 16 16 H 1.07991 * 120.00146 * 204.40758 * 15 14 13 17 17 C 1.39943 * 119.99682 * 24.40689 * 15 14 13 18 18 N 1.30824 * 120.00153 * 17.84868 * 17 15 14 19 19 Si 1.86801 * 120.00018 * 197.84722 * 17 15 14 20 20 H 1.48497 * 109.47085 * 60.00212 * 19 17 15 21 21 H 1.48501 * 109.47030 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46900 * 299.99859 * 19 17 15 23 23 C 1.40716 * 119.50953 * 359.70476 * 14 13 12 24 24 C 1.37622 * 119.74606 * 359.97438 * 23 14 13 25 25 C 1.34152 * 125.42772 * 179.97438 * 2 1 3 26 26 C 1.50705 * 127.02304 * 359.97438 * 25 2 1 27 27 H 1.09010 * 109.47344 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47569 * 120.02174 * 1 2 3 29 29 H 1.09004 * 109.47125 * 240.02576 * 1 2 3 30 30 H 1.08998 * 109.47404 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47035 * 119.97455 * 5 4 3 32 32 H 1.08993 * 109.47604 * 239.97558 * 5 4 3 33 33 H 1.09003 * 109.47029 * 299.99597 * 10 9 7 34 34 H 1.09002 * 109.47448 * 60.00182 * 10 9 7 35 35 H 1.08002 * 119.86978 * 359.97438 * 12 11 10 36 36 H 1.08002 * 120.12818 * 180.28257 * 13 12 11 37 37 H 0.96998 * 120.00297 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.12845 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.87348 * 180.02562 * 24 23 14 40 40 H 1.08997 * 109.46689 * 270.03936 * 26 25 2 41 41 H 1.08993 * 109.47303 * 30.04420 * 26 25 2 42 42 H 1.09008 * 109.46923 * 150.03978 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2850 1.0938 0.0000 4 6 3.5787 0.7590 0.0006 5 6 4.7383 1.7214 0.0002 6 6 3.6711 -0.6028 0.0004 7 6 4.9013 -1.4116 0.0013 8 8 5.4084 -1.7453 1.0542 9 8 5.4651 -1.7819 -1.1654 10 6 6.6770 -2.5780 -1.0885 11 6 7.1588 -2.8952 -2.4807 12 6 6.7224 -4.0489 -3.1136 13 6 7.1513 -4.3457 -4.3870 14 6 8.0457 -3.4791 -5.0422 15 6 8.4985 -3.7772 -6.3481 16 1 9.4374 -3.3751 -6.6990 17 6 7.7301 -4.5933 -7.1859 18 7 6.4648 -4.7951 -6.9214 19 14 8.5108 -5.3946 -8.6818 20 1 9.6249 -6.2749 -8.2470 21 1 7.4919 -6.2025 -9.3990 22 1 9.0362 -4.3427 -9.5891 23 6 8.4865 -2.3139 -4.3879 24 6 8.0392 -2.0338 -3.1169 25 6 2.2846 -1.0931 0.0005 26 6 1.8302 -2.5300 0.0017 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3634 -0.5141 -0.8897 29 1 -0.3633 -0.5135 0.8902 30 1 4.3617 2.7442 -0.0011 31 1 5.3456 1.5589 0.8907 32 1 5.3466 1.5572 -0.8892 33 1 7.4462 -2.0183 -0.5562 34 1 6.4689 -3.5062 -0.5562 35 1 6.0400 -4.7152 -2.6068 36 1 6.8065 -5.2427 -4.8799 37 1 5.9320 -5.3605 -7.5022 38 1 9.1733 -1.6420 -4.8813 39 1 8.3759 -1.1399 -2.6130 40 1 1.7204 -2.8754 1.0296 41 1 0.8723 -2.6086 -0.5124 42 1 2.5694 -3.1453 -0.5114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776110587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:18 Heat of formation + Delta-G solvation = -71.284199 kcal Electronic energy + Delta-G solvation = -24895.264636 eV Core-core repulsion = 21192.158096 eV Total energy + Delta-G solvation = -3703.106540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69671 -39.81701 -37.66445 -35.96171 -34.39493 -33.86902 -33.21920 -30.79227 -29.92911 -29.37497 -28.38948 -27.22960 -25.06228 -24.05972 -23.05086 -21.09261 -20.31407 -20.04468 -19.31069 -17.42611 -17.38253 -16.76170 -16.38485 -15.83591 -15.56186 -15.30302 -14.37389 -14.12574 -13.90756 -13.70052 -13.58103 -13.56874 -13.09381 -12.96901 -12.85917 -12.74088 -12.61380 -12.38570 -12.32802 -12.25587 -12.02970 -11.74885 -11.37615 -11.17302 -11.01115 -10.89330 -10.50010 -10.38053 -10.14520 -9.72203 -9.50215 -9.46583 -9.22421 -8.39974 -7.56675 -7.45645 -6.86822 -4.46870 1.47097 2.03826 2.29120 2.49398 2.64026 2.99200 3.00501 3.02191 3.05850 3.46732 3.85213 4.30017 4.51510 4.70564 4.79492 4.96577 5.14717 5.17141 5.21389 5.29607 5.39250 5.53628 5.58117 5.59814 5.61201 5.66715 5.68961 5.77674 5.83002 6.01507 6.08581 6.24471 6.30900 6.34031 6.78996 6.86929 6.97030 6.97696 7.17930 7.26245 7.51226 7.73431 7.95137 8.00570 8.05839 8.18820 8.53393 8.78065 8.86460 10.06854 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002793 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.565326 B =10022.023894 C =10551.997590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.017 4.017 3 O -0.169 6.169 4 C 0.051 3.949 5 C -0.083 4.083 6 C -0.206 4.206 7 C 0.538 3.462 8 O -0.509 6.509 9 O -0.340 6.340 10 C 0.134 3.866 11 C -0.236 4.236 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.230 4.230 24 C -0.063 4.063 25 C -0.139 4.139 26 C -0.087 4.087 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 7.394 10.269 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 O -0.067 6.067 4 C 0.000 4.000 5 C -0.139 4.139 6 C -0.208 4.208 7 C 0.381 3.619 8 O -0.399 6.399 9 O -0.256 6.256 10 C 0.062 3.938 11 C -0.237 4.237 12 C -0.094 4.094 13 C -0.189 4.189 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.250 4.250 24 C -0.082 4.082 25 C -0.140 4.140 26 C -0.143 4.143 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.907 7.429 10.450 16.203 hybrid contribution 0.400 -0.567 -0.674 0.968 sum -9.507 6.862 9.776 15.266 Atomic orbital electron populations 1.20299 0.84569 1.04009 1.03684 1.21934 0.93787 0.83042 1.07768 1.83663 1.15771 1.35152 1.72098 1.22422 0.83397 0.92997 1.01202 1.20509 0.91661 0.97101 1.04666 1.20205 0.92325 0.92773 1.15508 1.20137 0.82409 0.76764 0.82595 1.90819 1.62865 1.53003 1.33183 1.86906 1.41587 1.64613 1.32480 1.21794 0.82211 0.92955 0.96855 1.18665 1.08270 1.00545 0.96218 1.20537 0.97913 0.95728 0.95177 1.21287 1.03160 1.01177 0.93318 1.17681 0.89307 0.89114 0.92300 1.19647 1.05782 1.25660 0.97421 0.90193 1.25973 0.94168 0.94643 0.99613 1.69820 1.06053 1.28715 1.36304 0.86326 0.79898 0.79837 0.80473 1.18692 1.20224 1.18893 1.20959 1.08364 0.99350 0.96310 1.20383 0.96624 0.96439 0.94714 1.20999 0.89525 0.96734 1.06790 1.20231 1.01719 0.90006 1.02365 0.90463 0.89486 0.89660 0.89698 0.89069 0.88579 0.91980 0.91956 0.89342 0.86229 0.90565 0.88710 0.89309 0.91023 0.90900 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 9.93 36.00 0.36 -0.16 16 2 C -0.02 -0.21 7.28 -35.75 -0.26 -0.47 16 3 O -0.17 -2.24 10.52 7.68 0.08 -2.16 16 4 C 0.05 0.71 7.38 -34.94 -0.26 0.45 16 5 C -0.08 -0.87 10.18 36.01 0.37 -0.50 16 6 C -0.21 -3.33 6.20 -103.30 -0.64 -3.97 16 7 C 0.54 9.88 7.55 34.38 0.26 10.14 16 8 O -0.51 -10.12 16.90 -19.29 -0.33 -10.44 16 9 O -0.34 -6.77 10.22 -40.68 -0.42 -7.19 16 10 C 0.13 2.62 5.59 36.01 0.20 2.83 16 11 C -0.24 -5.27 5.54 -104.33 -0.58 -5.85 16 12 C -0.07 -1.76 9.67 -39.66 -0.38 -2.15 16 13 C -0.17 -4.38 8.70 -38.88 -0.34 -4.72 16 14 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 15 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 16 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 17 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.78 -19.85 10.95 55.55 0.61 -19.24 16 19 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 24 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 25 C -0.14 -1.96 6.38 -102.48 -0.65 -2.61 16 26 C -0.09 -1.02 10.15 36.01 0.37 -0.65 16 27 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 42 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -30.37 368.99 -8.65 -39.01 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.77 Total: 4.69 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -3.35 Total: -23.33 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.66 Total: -19.79 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.37 -8.65 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds