Wall clock time and date at job start Tue Mar 31 2020 10:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34192 * 125.16181 * 2 1 4 4 C 1.34167 * 110.93615 * 180.02562 * 3 2 1 5 5 C 1.47531 * 126.05898 * 179.97438 * 4 3 2 6 6 C 1.39709 * 120.15332 * 179.75164 * 5 4 3 7 7 C 1.37924 * 119.83945 * 179.72337 * 6 5 4 8 8 C 1.38383 * 120.15594 * 0.55316 * 7 6 5 9 9 C 1.38387 * 120.31835 * 359.72239 * 8 7 6 10 10 C 1.37922 * 120.15931 * 359.97438 * 9 8 7 11 11 C 1.38974 * 107.87621 * 0.02562 * 4 3 2 12 12 C 1.46938 * 127.32900 * 179.97438 * 11 4 3 13 13 O 1.21565 * 120.00308 * 90.02202 * 12 11 4 14 14 O 1.34834 * 119.99788 * 270.02147 * 12 11 4 15 15 C 1.45196 * 116.99860 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47070 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47225 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99992 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99802 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47100 * 90.00108 * 21 19 17 23 23 H 1.48502 * 109.47426 * 209.99898 * 21 19 17 24 24 H 1.48501 * 109.47743 * 330.00117 * 21 19 17 25 25 C 1.34247 * 125.16687 * 180.35411 * 2 1 3 26 26 C 1.50697 * 126.91244 * 359.94380 * 25 2 1 27 27 H 1.09004 * 109.47380 * 359.97069 * 1 2 3 28 28 H 1.08993 * 109.47456 * 119.97123 * 1 2 3 29 29 H 1.09000 * 109.47231 * 239.97634 * 1 2 3 30 30 H 1.08008 * 120.08517 * 359.97438 * 6 5 4 31 31 H 1.07996 * 119.92539 * 180.28133 * 7 6 5 32 32 H 1.07997 * 119.84440 * 179.74423 * 8 7 6 33 33 H 1.07998 * 119.91805 * 180.02562 * 9 8 7 34 34 H 1.07995 * 120.08042 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47155 * 300.00495 * 15 14 12 36 36 H 1.08999 * 109.47008 * 60.00079 * 15 14 12 37 37 H 1.08998 * 109.47592 * 300.00297 * 16 15 14 38 38 H 1.09007 * 109.46935 * 60.00470 * 16 15 14 39 39 H 0.97004 * 119.99755 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.47345 * 270.18622 * 26 25 2 41 41 H 1.08996 * 109.46714 * 30.18490 * 26 25 2 42 42 H 1.08998 * 109.47161 * 150.18461 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2798 1.0971 0.0000 4 6 3.5803 0.7674 -0.0006 5 6 4.7152 1.7100 -0.0013 6 6 6.0269 1.2292 0.0034 7 6 7.0830 2.1163 -0.0030 8 6 6.8458 3.4796 -0.0026 9 6 5.5491 3.9630 -0.0015 10 6 4.4832 3.0877 -0.0013 11 6 3.6688 -0.6196 -0.0015 12 6 4.8916 -1.4344 -0.0029 13 8 5.3980 -1.7725 1.0492 14 8 5.4520 -1.8071 -1.1713 15 6 6.6590 -2.6107 -1.0967 16 6 7.1445 -2.9342 -2.5111 17 6 8.3976 -3.7678 -2.4337 18 1 8.8065 -4.0400 -1.4719 19 6 9.0220 -4.1830 -3.5908 20 7 10.1152 -4.9108 -3.5232 21 14 8.3150 -3.7116 -5.2543 22 1 8.9036 -2.4212 -5.6946 23 1 8.6387 -4.7675 -6.2470 24 1 6.8408 -3.5711 -5.1440 25 6 2.2802 -1.0974 -0.0068 26 6 1.8165 -2.5313 -0.0145 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5133 -0.8902 29 1 -0.3634 -0.5142 0.8898 30 1 6.2136 0.1654 0.0080 31 1 8.0976 1.7461 -0.0040 32 1 7.6765 4.1697 -0.0035 33 1 5.3714 5.0283 -0.0016 34 1 3.4719 3.4664 -0.0008 35 1 7.4321 -2.0566 -0.5645 36 1 6.4457 -3.5381 -0.5652 37 1 6.3712 -3.4885 -3.0429 38 1 7.3577 -2.0069 -3.0430 39 1 10.5542 -5.2032 -4.3373 40 1 1.7024 -2.8818 1.0113 41 1 0.8591 -2.6007 -0.5308 42 1 2.5527 -3.1484 -0.5295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781420613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:55 Heat of formation + Delta-G solvation = -77.682662 kcal Electronic energy + Delta-G solvation = -25501.684585 eV Core-core repulsion = 21798.300587 eV Total energy + Delta-G solvation = -3703.383998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.74730 -41.50344 -40.01794 -37.86611 -35.52645 -35.38877 -34.18955 -32.83273 -32.08557 -31.52203 -29.63745 -27.60287 -26.76718 -25.49966 -23.71385 -23.18414 -22.65850 -21.52891 -20.59884 -19.37979 -18.81666 -18.27590 -17.79374 -17.56219 -17.42658 -16.80881 -16.34705 -16.12407 -15.67904 -15.24070 -14.99692 -14.66887 -14.51850 -14.38261 -14.35532 -14.29960 -13.95215 -13.79151 -13.58709 -13.40702 -13.25500 -13.12671 -12.72732 -12.60153 -12.57735 -12.35606 -12.06005 -11.87589 -11.83588 -11.61132 -11.56425 -11.04442 -10.84974 -10.34291 -10.08779 -9.00923 -8.37870 -6.46307 -0.57692 0.28641 0.73800 0.86544 0.96605 1.34768 1.36092 1.37743 1.49069 1.74773 2.30876 2.72228 2.96573 3.14554 3.48871 3.62582 3.73636 3.83537 3.94114 4.04385 4.06629 4.11545 4.15127 4.34850 4.37252 4.48448 4.53017 4.64710 4.66368 4.75315 4.76590 4.82546 4.86553 4.91274 4.94742 5.06340 5.19207 5.26241 5.27997 5.36573 5.41753 5.43174 5.45175 5.84010 5.87285 6.11483 6.43489 6.58849 7.18743 8.78080 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.004080 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.276866 B = 6861.071494 C = 8404.984515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.008 3.992 3 O -0.158 6.158 4 C 0.088 3.912 5 C -0.054 4.054 6 C -0.121 4.121 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.092 4.092 11 C -0.231 4.231 12 C 0.547 3.453 13 O -0.528 6.528 14 O -0.354 6.354 15 C 0.090 3.910 16 C 0.000 4.000 17 C -0.542 4.542 18 H 0.038 0.962 19 C 0.017 3.983 20 N -0.941 5.941 21 Si 0.950 3.050 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.249 1.249 25 C -0.162 4.162 26 C -0.085 4.085 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 19.275 5.962 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.041 4.041 3 O -0.055 6.055 4 C 0.037 3.963 5 C -0.055 4.055 6 C -0.139 4.139 7 C -0.142 4.142 8 C -0.114 4.114 9 C -0.128 4.128 10 C -0.110 4.110 11 C -0.233 4.233 12 C 0.392 3.608 13 O -0.419 6.419 14 O -0.271 6.271 15 C 0.017 3.983 16 C -0.038 4.038 17 C -0.580 4.580 18 H 0.056 0.944 19 C -0.181 4.181 20 N -0.580 5.580 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.173 1.173 25 C -0.163 4.163 26 C -0.142 4.142 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.970 19.330 6.151 29.176 hybrid contribution 0.964 -1.006 -0.364 1.440 sum -20.006 18.324 5.787 27.740 Atomic orbital electron populations 1.20655 0.80237 1.05941 1.05742 1.22941 0.95650 0.81522 1.03954 1.83729 1.14485 1.35542 1.71709 1.20713 0.82884 0.90394 1.02322 1.17872 0.88329 0.92965 1.06292 1.21242 0.92613 0.99487 1.00585 1.21322 0.98794 0.94322 0.99784 1.21776 0.98770 0.94604 0.96249 1.21581 0.91431 1.01540 0.98242 1.21546 1.01631 0.90159 0.97653 1.20768 0.92660 0.92867 1.17018 1.20292 0.82665 0.76163 0.81706 1.90847 1.63314 1.54040 1.33669 1.86689 1.41944 1.64764 1.33698 1.23107 0.81870 0.92823 1.00514 1.19452 0.95509 0.97002 0.91825 1.21042 1.09321 1.33585 0.94068 0.94381 1.25871 0.94671 0.93948 1.03645 1.70025 1.20137 1.37414 1.30393 0.85667 0.80305 0.78736 0.78085 1.18687 1.20159 1.17268 1.21290 0.87944 0.98706 1.08356 1.20321 1.02541 0.88007 1.03309 0.88671 0.87295 0.87386 0.89098 0.84527 0.81975 0.81222 0.83076 0.92092 0.92032 0.94759 0.94955 0.91914 0.90091 0.87297 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 9.90 71.24 0.70 0.05 16 2 C 0.01 0.17 7.25 24.77 0.18 0.35 16 3 O -0.16 -3.98 10.29 -0.11 0.00 -3.98 16 4 C 0.09 2.74 7.12 24.90 0.18 2.91 16 5 C -0.05 -1.58 5.87 -20.12 -0.12 -1.70 16 6 C -0.12 -3.90 9.43 22.55 0.21 -3.69 16 7 C -0.12 -3.19 10.03 22.23 0.22 -2.97 16 8 C -0.10 -1.75 10.04 22.34 0.22 -1.53 16 9 C -0.11 -1.78 10.03 22.23 0.22 -1.56 16 10 C -0.09 -1.92 9.72 22.55 0.22 -1.70 16 11 C -0.23 -8.03 6.24 -18.57 -0.12 -8.15 16 12 C 0.55 22.41 4.80 70.10 0.34 22.75 16 13 O -0.53 -23.98 16.60 19.62 0.33 -23.65 16 14 O -0.35 -15.30 10.02 -57.47 -0.58 -15.88 16 15 C 0.09 4.16 5.42 71.98 0.39 4.55 16 16 C 0.00 -0.02 4.42 29.85 0.13 0.11 16 17 C -0.54 -32.02 9.66 25.60 0.25 -31.77 16 18 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 19 C 0.02 1.01 5.47 84.66 0.46 1.47 16 20 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 21 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 25 C -0.16 -4.36 6.36 -18.52 -0.12 -4.48 16 26 C -0.09 -1.84 10.13 71.24 0.72 -1.12 16 27 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 3.50 4.43 -2.91 -0.01 3.48 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.15 2.42 7.92 -2.91 -0.02 2.40 16 35 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.03 1.67 7.20 -2.39 -0.02 1.65 16 38 H 0.03 1.56 7.57 -2.38 -0.02 1.54 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.50 7.88 -2.39 -0.02 1.48 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -77.62 363.43 7.01 -70.61 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.97 Total: 11.69 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 4.10 Total: -26.47 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.30 Total: -58.40 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.25 Total: -43.51 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -77.62 7.01 -70.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781420613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.068 kcal (2) G-P(sol) polarization free energy of solvation -77.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds