Wall clock time and date at job start Tue Mar 31 2020 10:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34186 * 125.16805 * 2 1 4 4 C 1.34163 * 110.93775 * 180.18603 * 3 2 1 5 5 C 1.47533 * 126.06127 * 179.81667 * 4 3 2 6 6 C 1.39716 * 120.15505 * 359.69562 * 5 4 3 7 7 C 1.37918 * 119.83502 * 179.97438 * 6 5 4 8 8 C 1.38384 * 120.15965 * 0.02562 * 7 6 5 9 9 C 1.38371 * 120.32239 * 359.97366 * 8 7 6 10 10 C 1.37926 * 120.16068 * 0.02562 * 9 8 7 11 11 C 1.38970 * 107.88036 * 359.55960 * 4 3 2 12 12 C 1.46939 * 127.33329 * 180.28238 * 11 4 3 13 13 O 1.21578 * 120.00008 * 89.97549 * 12 11 4 14 14 O 1.34824 * 120.00181 * 269.97381 * 12 11 4 15 15 C 1.45193 * 116.99981 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.47741 * 30.00023 * 15 14 12 17 17 C 1.52999 * 109.47218 * 269.99787 * 15 14 12 18 18 C 1.50703 * 109.47178 * 149.99952 * 15 14 12 19 19 H 1.07999 * 119.99934 * 5.45979 * 18 15 14 20 20 C 1.37878 * 120.00056 * 185.45713 * 18 15 14 21 21 N 1.31516 * 120.00315 * 9.55498 * 20 18 15 22 22 Si 1.86805 * 119.99881 * 189.56125 * 20 18 15 23 23 H 1.48492 * 109.47252 * 84.99352 * 22 20 18 24 24 H 1.48502 * 109.46925 * 204.99348 * 22 20 18 25 25 H 1.48499 * 109.46980 * 324.98877 * 22 20 18 26 26 C 1.34258 * 125.16440 * 179.69743 * 2 1 3 27 27 C 1.50703 * 126.90789 * 0.03138 * 26 2 1 28 28 H 1.08998 * 109.46896 * 270.30411 * 1 2 3 29 29 H 1.08994 * 109.46837 * 30.30896 * 1 2 3 30 30 H 1.09001 * 109.46860 * 150.30338 * 1 2 3 31 31 H 1.07998 * 120.07794 * 0.24941 * 6 5 4 32 32 H 1.07999 * 119.92108 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.83637 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.92437 * 179.97438 * 9 8 7 35 35 H 1.07999 * 120.08645 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47276 * 304.11692 * 17 15 14 37 37 H 1.08997 * 109.46979 * 64.11634 * 17 15 14 38 38 H 1.09004 * 109.47243 * 184.11968 * 17 15 14 39 39 H 0.96994 * 120.00302 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.47194 * 269.95759 * 27 26 2 41 41 H 1.08996 * 109.47334 * 29.96375 * 27 26 2 42 42 H 1.09002 * 109.46813 * 149.96110 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2799 1.0969 0.0000 4 6 3.5804 0.7671 -0.0041 5 6 4.7154 1.7097 -0.0091 6 6 4.4835 3.0875 -0.0165 7 6 5.5494 3.9627 -0.0206 8 6 6.8460 3.4791 -0.0181 9 6 7.0832 2.1159 -0.0109 10 6 6.0271 1.2288 -0.0066 11 6 3.6689 -0.6197 0.0033 12 6 4.8916 -1.4346 0.0080 13 8 5.3973 -1.7658 1.0629 14 8 5.4528 -1.8151 -1.1574 15 6 6.6590 -2.6192 -1.0766 16 1 6.6368 -3.2172 -0.1656 17 6 7.8831 -1.7017 -1.0547 18 6 6.7360 -3.5309 -2.2741 19 1 6.0047 -3.4472 -3.0645 20 6 7.7401 -4.4719 -2.3608 21 7 8.5148 -4.7042 -1.3238 22 14 8.0001 -5.4165 -3.9513 23 1 8.8606 -4.6219 -4.8640 24 1 8.6589 -6.7139 -3.6543 25 1 6.6874 -5.6650 -4.5996 26 6 2.2803 -1.0975 0.0058 27 6 1.8164 -2.5314 0.0127 28 1 -0.3633 0.0055 1.0276 29 1 -0.3633 0.8872 -0.5186 30 1 -0.3633 -0.8927 -0.5091 31 1 3.4720 3.4661 -0.0143 32 1 5.3717 5.0279 -0.0267 33 1 7.6768 4.1692 -0.0218 34 1 8.0977 1.7456 -0.0094 35 1 6.2136 0.1650 -0.0014 36 1 7.8662 -1.0524 -1.9300 37 1 7.8649 -1.0932 -0.1506 38 1 8.7903 -2.3058 -1.0680 39 1 9.2209 -5.3664 -1.3846 40 1 1.7048 -2.8722 1.0420 41 1 0.8577 -2.6056 -0.5006 42 1 2.5513 -3.1534 -0.4983 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781475191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:59 Heat of formation + Delta-G solvation = -76.548722 kcal Electronic energy + Delta-G solvation = -26164.599331 eV Core-core repulsion = 22461.264504 eV Total energy + Delta-G solvation = -3703.334827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.70928 -41.32103 -39.97736 -37.69022 -35.50025 -35.29968 -34.12133 -32.09726 -31.95541 -31.38195 -29.55840 -27.51584 -26.76527 -26.08777 -23.69071 -23.35775 -22.83607 -21.18876 -20.48983 -19.11093 -18.70018 -18.23041 -17.48223 -17.46547 -17.24034 -16.71884 -16.33206 -15.91576 -15.57383 -14.96588 -14.69031 -14.63775 -14.48054 -14.34291 -14.27663 -13.94443 -13.89845 -13.77173 -13.58843 -13.36029 -13.03223 -12.99792 -12.82975 -12.66704 -12.58015 -12.33797 -12.22020 -12.00466 -11.79426 -11.68668 -11.11944 -10.99294 -10.65514 -10.32028 -10.05816 -8.98367 -8.35684 -6.50381 -0.53646 0.31484 0.88426 0.92989 1.04577 1.38432 1.41702 1.43154 1.52472 1.99149 2.37777 2.75052 2.95761 3.18829 3.61677 3.71713 3.81441 3.88660 3.98018 4.13492 4.16181 4.35975 4.40058 4.43486 4.54808 4.61441 4.66409 4.67103 4.69506 4.75381 4.77189 4.87943 4.89246 4.96491 4.97061 5.06013 5.30516 5.37405 5.38493 5.44527 5.44932 5.46865 5.71240 5.86633 5.90090 5.94788 6.50772 6.77223 7.19623 8.74455 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.004781 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.628750 B = 5855.110828 C = 7642.880210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.010 3.990 3 O -0.156 6.156 4 C 0.084 3.916 5 C -0.054 4.054 6 C -0.092 4.092 7 C -0.110 4.110 8 C -0.095 4.095 9 C -0.124 4.124 10 C -0.127 4.127 11 C -0.230 4.230 12 C 0.540 3.460 13 O -0.543 6.543 14 O -0.356 6.356 15 C 0.214 3.786 16 H 0.011 0.989 17 C -0.132 4.132 18 C -0.552 4.552 19 H 0.064 0.936 20 C 0.022 3.978 21 N -0.915 5.915 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.266 1.266 26 C -0.167 4.167 27 C -0.084 4.084 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.273 0.727 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 16.915 1.434 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 O -0.053 6.053 4 C 0.032 3.968 5 C -0.055 4.055 6 C -0.110 4.110 7 C -0.127 4.127 8 C -0.113 4.113 9 C -0.142 4.142 10 C -0.145 4.145 11 C -0.233 4.233 12 C 0.386 3.614 13 O -0.435 6.435 14 O -0.272 6.272 15 C 0.161 3.839 16 H 0.029 0.971 17 C -0.190 4.190 18 C -0.590 4.590 19 H 0.082 0.918 20 C -0.178 4.178 21 N -0.552 5.552 22 Si 0.804 3.196 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.190 1.190 26 C -0.168 4.168 27 C -0.141 4.141 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.170 0.830 32 H 0.190 0.810 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.169 16.956 1.781 21.543 hybrid contribution 1.008 -1.510 -0.248 1.832 sum -12.161 15.446 1.533 19.719 Atomic orbital electron populations 1.20667 0.79942 1.06221 1.05574 1.22939 0.95685 0.81415 1.03884 1.83697 1.14366 1.35367 1.71895 1.20731 0.82973 0.90313 1.02758 1.17893 0.88233 0.93030 1.06307 1.21548 1.01732 0.89952 0.97739 1.21581 0.91340 1.01511 0.98314 1.21770 0.98827 0.94381 0.96272 1.21282 0.98555 0.94360 1.00003 1.21431 0.92824 1.00005 1.00241 1.20923 0.92914 0.93180 1.16241 1.20361 0.82667 0.76122 0.82272 1.90795 1.64088 1.54771 1.33811 1.86696 1.43195 1.64338 1.32964 1.20491 0.77682 0.87875 0.97862 0.97126 1.21903 0.99763 0.98607 0.98739 1.21186 1.14555 1.18420 1.04811 0.91761 1.25838 0.94720 0.96626 1.00657 1.70100 1.20211 1.34161 1.30771 0.85225 0.78876 0.77491 0.78026 1.18867 1.20016 1.19013 1.21312 0.88153 0.98711 1.08616 1.20312 1.02387 0.88231 1.03145 0.87751 0.88338 0.87031 0.83019 0.80957 0.81700 0.84744 0.88888 0.92884 0.95290 0.91209 0.91806 0.90228 0.86897 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.19 71.24 0.73 -0.15 16 2 C 0.01 0.25 7.26 24.78 0.18 0.43 16 3 O -0.16 -4.64 10.29 0.00 0.00 -4.64 16 4 C 0.08 3.05 7.11 24.90 0.18 3.23 16 5 C -0.05 -1.84 5.87 -20.11 -0.12 -1.96 16 6 C -0.09 -2.21 9.72 22.55 0.22 -1.99 16 7 C -0.11 -2.03 10.03 22.23 0.22 -1.81 16 8 C -0.09 -1.94 10.04 22.34 0.22 -1.72 16 9 C -0.12 -3.62 10.03 22.23 0.22 -3.40 16 10 C -0.13 -4.74 9.43 22.55 0.21 -4.53 16 11 C -0.23 -9.72 6.24 -18.57 -0.12 -9.84 16 12 C 0.54 27.47 4.77 70.10 0.33 27.80 16 13 O -0.54 -30.41 16.08 19.58 0.31 -30.09 16 14 O -0.36 -19.48 9.65 -57.37 -0.55 -20.04 16 15 C 0.21 12.50 2.43 29.85 0.07 12.57 16 16 H 0.01 0.72 7.11 -2.39 -0.02 0.70 16 17 C -0.13 -6.98 9.02 71.98 0.65 -6.33 16 18 C -0.55 -32.80 8.82 25.60 0.23 -32.57 16 19 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 20 C 0.02 1.25 5.17 84.65 0.44 1.69 16 21 N -0.92 -54.10 12.16 21.45 0.26 -53.84 16 22 Si 0.98 43.75 29.55 68.60 2.03 45.78 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.17 -5.57 6.36 -18.52 -0.12 -5.68 16 27 C -0.08 -2.40 10.13 71.24 0.72 -1.67 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 1.05 7.10 -2.39 -0.02 1.03 16 31 H 0.15 2.87 7.92 -2.91 -0.02 2.85 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.09 4.22 2.92 -2.91 -0.01 4.21 16 36 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.03 1.42 7.11 -2.39 -0.02 1.41 16 38 H 0.07 3.84 6.82 -2.39 -0.02 3.83 16 39 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.11 2.16 7.11 -2.39 -0.02 2.14 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.13 358.79 7.37 -71.76 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.04 Total: 17.01 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.27 Total: -25.94 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.26 Total: -53.84 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.24 Total: -54.77 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.13 7.37 -71.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781475191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.785 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds