Wall clock time and date at job start Tue Mar 31 2020 10:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50705 * 109.47474 * 2 1 4 4 C 1.38675 * 119.89706 * 269.98147 * 3 2 1 5 5 C 1.37860 * 120.65048 * 179.56280 * 4 3 2 6 6 C 1.38969 * 119.96771 * 0.68819 * 5 4 3 7 7 O 1.34913 * 133.10017 * 179.21686 * 6 5 4 8 8 C 1.33773 * 111.36983 * 179.97438 * 7 6 5 9 9 C 1.36147 * 109.83801 * 359.97438 * 8 7 6 10 10 C 1.46915 * 127.15494 * 179.97438 * 9 8 7 11 11 O 1.21566 * 120.00429 * 185.09001 * 10 9 8 12 12 O 1.34818 * 119.99667 * 5.09503 * 10 9 8 13 13 C 1.45199 * 117.00066 * 185.08043 * 12 10 9 14 14 C 1.53000 * 109.47316 * 184.90166 * 13 12 10 15 15 C 1.50704 * 115.55089 * 174.57527 * 14 13 12 16 16 H 1.07995 * 119.99722 * 213.51071 * 15 14 13 17 17 C 1.37872 * 119.99892 * 33.51184 * 15 14 13 18 18 N 1.31512 * 119.99938 * 200.84087 * 17 15 14 19 19 Si 1.86800 * 120.00251 * 20.83432 * 17 15 14 20 20 H 1.48500 * 109.47501 * 271.93878 * 19 17 15 21 21 H 1.48504 * 109.46909 * 31.93944 * 19 17 15 22 22 H 1.48498 * 109.47106 * 151.93698 * 19 17 15 23 23 C 1.52994 * 117.49785 * 320.24472 * 14 13 12 24 24 C 1.53003 * 117.49686 * 28.90481 * 14 13 12 25 25 C 1.40227 * 119.25460 * 359.50944 * 6 5 4 26 26 C 1.37847 * 119.89948 * 89.99187 * 3 2 1 27 27 H 1.09003 * 109.47107 * 60.00345 * 1 2 3 28 28 H 1.09002 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47500 * 299.99783 * 1 2 3 30 30 H 1.09002 * 109.47802 * 239.99856 * 2 1 3 31 31 H 1.09003 * 109.47107 * 119.99654 * 2 1 3 32 32 H 1.08004 * 119.67988 * 359.97438 * 4 3 2 33 33 H 1.07992 * 120.01268 * 179.91895 * 5 4 3 34 34 H 1.07996 * 125.08102 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47207 * 64.90134 * 13 12 10 36 36 H 1.08996 * 109.47009 * 304.90411 * 13 12 10 37 37 H 0.96997 * 120.00161 * 180.02562 * 18 17 15 38 38 H 1.09003 * 117.50195 * 214.99920 * 23 14 13 39 39 H 1.09002 * 117.50227 * 0.02562 * 23 14 13 40 40 H 1.08996 * 117.49724 * 359.97438 * 24 14 13 41 41 H 1.08998 * 117.49466 * 144.97127 * 24 14 13 42 42 H 1.08000 * 120.18607 * 0.03443 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0724 -1.2022 5 6 2.7142 3.3750 -1.2204 6 6 2.9554 4.0427 -0.0257 7 8 3.4016 5.2827 0.2634 8 6 3.4730 5.4793 1.5847 9 6 3.0690 4.3571 2.2413 10 6 2.9980 4.1566 3.6949 11 8 2.7045 3.0660 4.1446 12 8 3.2582 5.1824 4.5303 13 6 3.2807 4.8857 5.9515 14 6 3.4680 6.1831 6.7404 15 6 3.3837 6.0504 8.2392 16 1 2.9715 6.8549 8.8302 17 6 3.8328 4.9020 8.8559 18 7 3.4089 4.5946 10.0623 19 14 5.0433 3.7825 7.9779 20 1 4.2983 2.7993 7.1512 21 1 5.9258 4.5964 7.1038 22 1 5.8682 3.0620 8.9807 23 6 4.4436 7.2181 6.1767 24 6 2.9356 7.4737 6.1144 25 6 2.7250 3.3801 1.1884 26 6 2.2613 2.0687 1.1950 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.0815 1.5565 -2.1335 33 1 2.8918 3.8720 -2.1625 34 1 3.8011 6.3920 2.0596 35 1 4.1053 4.2066 6.1679 36 1 2.3395 4.4178 6.2398 37 1 3.7251 3.7869 10.4963 38 1 5.0244 7.8031 6.8898 39 1 4.9516 6.9750 5.2435 40 1 2.4523 7.3985 5.1404 41 1 2.5239 8.2266 6.7866 42 1 2.0821 1.5608 2.1311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797076123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:29 Heat of formation + Delta-G solvation = -47.235173 kcal Electronic energy + Delta-G solvation = -25435.094220 eV Core-core repulsion = 21733.030524 eV Total energy + Delta-G solvation = -3702.063696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75160 -41.42479 -39.50304 -38.85865 -36.95119 -34.71418 -34.46820 -34.07828 -30.98592 -30.05338 -29.48875 -27.47643 -25.45873 -24.75110 -23.91920 -23.07619 -22.11865 -21.47731 -21.12521 -19.36859 -18.86979 -18.27524 -17.88558 -17.75396 -17.23293 -16.79941 -16.63234 -16.29581 -15.61009 -15.50425 -15.13584 -15.01125 -14.71685 -14.54573 -14.39153 -14.23395 -13.92504 -13.55779 -13.49176 -13.07766 -12.80973 -12.63587 -12.39382 -12.35321 -12.10485 -12.07284 -11.98734 -11.86946 -11.72623 -11.49911 -11.37930 -11.14798 -10.62361 -10.34453 -9.58128 -9.40667 -8.50822 -6.40230 -0.41459 0.15040 0.46846 1.17733 1.22982 1.29675 1.37663 1.61946 1.78387 2.17109 2.59012 2.69486 3.22331 3.32763 3.39537 3.68088 3.79205 3.90980 3.92664 4.05491 4.11450 4.15968 4.21387 4.30401 4.44761 4.47908 4.48517 4.68835 4.73826 4.75603 4.94735 4.95442 4.99722 5.05477 5.08741 5.12293 5.20148 5.23410 5.33057 5.35642 5.49481 5.55569 5.56520 5.57857 5.94281 6.17785 6.54744 6.57766 7.15512 8.65491 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.003532 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.556988 B = 7925.567255 C = 8958.837865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.086 4.086 5 C -0.088 4.088 6 C 0.025 3.975 7 O -0.172 6.172 8 C 0.143 3.857 9 C -0.267 4.267 10 C 0.529 3.471 11 O -0.546 6.546 12 O -0.339 6.339 13 C 0.107 3.893 14 C -0.033 4.033 15 C -0.495 4.495 16 H 0.053 0.947 17 C 0.036 3.964 18 N -0.919 5.919 19 Si 0.916 3.084 20 H -0.279 1.279 21 H -0.242 1.242 22 H -0.284 1.284 23 C -0.179 4.179 24 C -0.157 4.157 25 C -0.112 4.112 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.267 0.733 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -3.597 -29.140 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.103 4.103 5 C -0.106 4.106 6 C -0.021 4.021 7 O -0.071 6.071 8 C 0.075 3.925 9 C -0.270 4.270 10 C 0.376 3.624 11 O -0.438 6.438 12 O -0.255 6.255 13 C 0.034 3.966 14 C -0.034 4.034 15 C -0.532 4.532 16 H 0.071 0.929 17 C -0.165 4.165 18 N -0.557 5.557 19 Si 0.743 3.257 20 H -0.207 1.207 21 H -0.166 1.166 22 H -0.211 1.211 23 C -0.217 4.217 24 C -0.194 4.194 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.195 0.805 33 H 0.188 0.812 34 H 0.282 0.718 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.899 -3.841 -29.016 29.283 hybrid contribution 0.316 -0.876 1.414 1.693 sum -0.583 -4.717 -27.603 28.009 Atomic orbital electron populations 1.21752 0.94125 1.02622 1.01856 1.20604 0.96605 0.90814 1.04000 1.20159 0.98646 0.97720 0.92019 1.21286 0.97402 0.92959 0.98687 1.20424 1.01107 0.94306 0.94756 1.19873 1.03301 0.83363 0.95573 1.83905 1.68400 1.30432 1.24328 1.25432 0.89560 0.98601 0.78955 1.19997 1.19459 0.98613 0.88886 1.20426 0.72808 0.81912 0.87220 1.90816 1.46492 1.27524 1.79015 1.86456 1.81547 1.38315 1.19226 1.22925 1.00349 0.98588 0.74775 1.19228 1.05135 0.87003 0.92068 1.20404 1.41417 1.02703 0.88699 0.92914 1.25605 0.96915 0.98404 0.95603 1.70071 1.42209 1.26308 1.17073 0.86417 0.81051 0.79700 0.78538 1.20684 1.16575 1.21054 1.23135 0.92212 1.04242 1.02077 1.22821 0.96613 0.98465 1.01512 1.19562 1.04457 0.95763 0.91504 1.20548 0.99521 0.92588 0.99033 0.91351 0.90884 0.94545 0.87956 0.91843 0.80528 0.81176 0.71797 0.93313 0.92712 0.91900 0.89768 0.88310 0.87765 0.89974 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.66 5.13 -19.85 -0.10 -1.76 16 4 C -0.09 -1.18 9.67 22.28 0.22 -0.96 16 5 C -0.09 -1.34 10.06 22.36 0.22 -1.11 16 6 C 0.02 0.55 7.39 22.93 0.17 0.72 16 7 O -0.17 -3.51 10.52 -3.57 -0.04 -3.54 16 8 C 0.14 2.98 11.82 67.33 0.80 3.77 16 9 C -0.27 -8.09 6.30 -18.99 -0.12 -8.21 16 10 C 0.53 20.52 7.93 70.09 0.56 21.08 16 11 O -0.55 -25.29 16.00 19.62 0.31 -24.97 16 12 O -0.34 -13.11 8.34 -57.30 -0.48 -13.59 16 13 C 0.11 4.97 4.47 71.98 0.32 5.30 16 14 C -0.03 -1.57 1.84 -52.93 -0.10 -1.66 16 15 C -0.50 -28.20 9.52 25.60 0.24 -27.96 16 16 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 17 C 0.04 2.09 5.35 84.65 0.45 2.54 16 18 N -0.92 -56.83 13.96 21.45 0.30 -56.53 16 19 Si 0.92 45.76 24.41 68.60 1.67 47.43 16 20 H -0.28 -14.29 6.60 99.48 0.66 -13.64 16 21 H -0.24 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 23 C -0.18 -6.95 9.67 30.62 0.30 -6.66 16 24 C -0.16 -6.04 9.63 30.62 0.29 -5.75 16 25 C -0.11 -3.23 6.29 -20.09 -0.13 -3.35 16 26 C -0.10 -2.76 9.53 22.38 0.21 -2.54 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.27 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.05 2.41 2.99 -2.39 -0.01 2.40 16 36 H 0.05 2.76 7.97 -2.39 -0.02 2.75 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.10 3.32 7.84 -2.39 -0.02 3.30 16 40 H 0.10 3.48 7.48 -2.39 -0.02 3.46 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.15 16 42 H 0.11 3.52 7.55 -2.91 -0.02 3.50 16 Total: -1.00 -74.70 355.85 6.99 -67.71 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.99 Total: 12.42 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.23 Total: -28.92 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.20 Total: -42.10 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -74.70 6.99 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797076123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.474 kcal (2) G-P(sol) polarization free energy of solvation -74.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds