Wall clock time and date at job start Tue Mar 31 2020 10:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34451 * 124.92103 * 2 1 4 4 C 1.34807 * 110.88819 * 180.02562 * 3 2 1 5 5 C 1.38940 * 133.49506 * 179.97438 * 4 3 2 6 6 C 1.37850 * 119.81636 * 179.97438 * 5 4 3 7 7 C 1.38740 * 120.68797 * 0.02562 * 6 5 4 8 8 C 1.36742 * 120.41443 * 0.02562 * 7 6 5 9 9 C 1.39406 * 119.71690 * 359.68200 * 8 7 6 10 10 C 1.33992 * 124.92169 * 180.02562 * 2 1 3 11 11 C 1.50696 * 126.90897 * 359.95844 * 10 2 1 12 12 C 1.50704 * 109.47160 * 90.02416 * 11 10 2 13 13 O 1.20825 * 119.99559 * 5.28052 * 12 11 10 14 14 O 1.34227 * 120.00314 * 185.00431 * 12 11 10 15 15 C 1.45195 * 117.00077 * 183.60056 * 14 12 11 16 16 C 1.50704 * 112.85126 * 53.84977 * 15 14 12 17 17 H 1.07997 * 119.99854 * 245.63444 * 16 15 14 18 18 C 1.37875 * 120.00052 * 65.62982 * 16 15 14 19 19 N 1.31512 * 120.00027 * 183.92292 * 18 16 15 20 20 Si 1.86797 * 119.99998 * 3.92485 * 18 16 15 21 21 H 1.48502 * 109.47370 * 93.73894 * 20 18 16 22 22 H 1.48505 * 109.46976 * 213.74057 * 20 18 16 23 23 H 1.48501 * 109.47269 * 333.73508 * 20 18 16 24 24 C 1.53777 * 113.61642 * 282.54079 * 15 14 12 25 25 C 1.53782 * 87.08550 * 220.01901 * 24 15 14 26 26 C 1.53781 * 113.61410 * 185.04038 * 15 14 12 27 27 H 1.09002 * 109.47580 * 269.98175 * 1 2 3 28 28 H 1.09006 * 109.46959 * 29.97896 * 1 2 3 29 29 H 1.09002 * 109.47066 * 149.97827 * 1 2 3 30 30 H 1.07999 * 120.09052 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.65311 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.79037 * 180.02562 * 7 6 5 33 33 H 1.08008 * 120.13567 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47485 * 330.02781 * 11 10 2 35 35 H 1.09001 * 109.47354 * 210.02498 * 11 10 2 36 36 H 0.96998 * 120.00476 * 180.02562 * 19 18 16 37 37 H 1.09001 * 113.61590 * 334.56822 * 24 15 14 38 38 H 1.09003 * 113.61441 * 105.47308 * 24 15 14 39 39 H 1.08999 * 113.61061 * 270.88790 * 25 24 15 40 40 H 1.08994 * 113.69142 * 139.99114 * 25 24 15 41 41 H 1.08997 * 113.62107 * 254.52775 * 26 15 14 42 42 H 1.08995 * 113.61503 * 25.35544 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5845 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9770 0.8805 -0.0012 7 6 6.0491 -0.5051 -0.0010 8 6 4.9074 -1.2576 -0.0013 9 6 3.6641 -0.6271 0.0048 10 6 2.2740 -1.0986 -0.0005 11 6 1.8041 -2.5305 -0.0003 12 6 1.6472 -3.0079 -1.4210 13 8 1.9821 -2.2960 -2.3380 14 8 1.1406 -4.2262 -1.6676 15 6 1.0928 -4.6518 -3.0550 16 6 2.4305 -4.5574 -3.7426 17 1 2.5727 -3.8584 -4.5535 18 6 3.4728 -5.3633 -3.3363 19 7 4.6609 -5.2274 -3.8835 20 14 3.1974 -6.6482 -2.0087 21 1 2.8686 -7.9509 -2.6412 22 1 4.4309 -6.7906 -1.1942 23 1 2.0737 -6.2244 -1.1352 24 6 -0.0587 -4.0191 -3.8541 25 6 -0.2453 -5.3918 -4.5216 26 6 0.3885 -6.0032 -3.2608 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 4.7118 2.6006 -0.0018 31 1 6.8865 1.4629 -0.0021 32 1 7.0130 -0.9922 -0.0005 33 1 4.9687 -2.3360 -0.0008 34 1 0.8453 -2.5982 0.5137 35 1 2.5365 -3.1532 0.5135 36 1 5.3942 -5.7946 -3.5980 37 1 -0.9038 -3.7155 -3.2362 38 1 0.2651 -3.2389 -4.5431 39 1 0.3559 -5.5252 -5.4210 40 1 -1.2891 -5.6709 -4.6649 41 1 1.0731 -6.8250 -3.4709 42 1 -0.3334 -6.2428 -2.4801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:37 Heat of formation + Delta-G solvation = -30.121411 kcal Electronic energy + Delta-G solvation = -26678.596983 eV Core-core repulsion = 22977.275395 eV Total energy + Delta-G solvation = -3701.321588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32591 -39.51359 -37.71671 -37.40188 -34.55120 -33.93083 -32.33026 -31.10716 -30.43594 -29.09849 -26.72240 -26.17930 -24.95866 -23.06628 -22.77875 -21.56172 -20.83160 -19.30334 -18.58176 -17.17479 -16.90506 -16.69516 -16.20468 -15.43445 -15.39544 -15.34633 -15.23184 -14.55702 -13.98898 -13.76187 -13.56018 -13.26346 -13.12884 -12.93142 -12.82170 -12.60454 -12.18618 -12.00884 -11.95903 -11.74551 -11.54026 -11.31817 -11.00184 -10.94714 -10.67949 -10.60778 -10.17568 -9.96957 -9.82976 -9.74731 -9.35426 -8.98372 -8.72269 -8.56297 -8.42478 -7.85458 -6.18925 -4.23826 1.08557 1.55031 2.39900 2.83768 3.22363 3.27818 3.41963 3.48087 3.82691 4.05006 4.36494 4.53491 4.75400 4.99235 5.08816 5.12528 5.18899 5.24489 5.40678 5.43860 5.49349 5.50712 5.57611 5.68738 5.71072 5.72446 5.75386 5.84003 5.89483 6.11803 6.21662 6.35343 6.37399 6.39784 6.44993 6.61728 6.63094 6.66043 6.83573 6.84068 6.92770 7.26184 7.35076 7.48614 7.87294 8.43129 8.89777 9.07753 9.41592 10.91723 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.005194 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.000811 B = 5389.540407 C = 6511.815970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.040 3.960 3 O -0.193 6.193 4 C 0.050 3.950 5 C -0.111 4.111 6 C -0.098 4.098 7 C -0.136 4.136 8 C -0.061 4.061 9 C -0.107 4.107 10 C -0.152 4.152 11 C -0.049 4.049 12 C 0.454 3.546 13 O -0.475 6.475 14 O -0.373 6.373 15 C 0.199 3.801 16 C -0.499 4.499 17 H 0.084 0.916 18 C 0.082 3.918 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.234 1.234 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.266 0.734 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 8.100 10.719 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 O -0.095 6.095 4 C 0.003 3.997 5 C -0.130 4.130 6 C -0.116 4.116 7 C -0.154 4.154 8 C -0.079 4.079 9 C -0.108 4.108 10 C -0.153 4.153 11 C -0.087 4.087 12 C 0.294 3.706 13 O -0.360 6.360 14 O -0.292 6.292 15 C 0.166 3.834 16 C -0.536 4.536 17 H 0.102 0.898 18 C -0.123 4.123 19 N -0.516 5.516 20 Si 0.684 3.316 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.156 1.156 24 C -0.184 4.184 25 C -0.161 4.161 26 C -0.170 4.170 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.981 8.508 10.380 14.316 hybrid contribution 0.319 -0.891 0.448 1.047 sum -4.662 7.617 10.828 14.036 Atomic orbital electron populations 1.20424 0.84890 1.04649 1.03489 1.21959 0.93663 0.83229 1.01915 1.83898 1.15037 1.33724 1.76872 1.19513 0.83157 0.93424 1.03559 1.19838 0.88114 0.99358 1.05656 1.20857 0.96308 0.94612 0.99819 1.20748 0.98358 0.93809 1.02528 1.20359 0.90260 1.00373 0.96900 1.19700 0.93623 0.92869 1.04589 1.20173 0.91072 0.94396 1.09651 1.19681 1.03518 0.91333 0.94212 1.22721 0.75988 0.81071 0.90794 1.90639 1.43369 1.55747 1.46242 1.86519 1.74222 1.32553 1.35882 1.21648 0.95031 0.91065 0.75704 1.20772 0.92169 1.22168 1.18470 0.89788 1.24992 0.94739 0.96815 0.95721 1.69923 1.00932 1.38525 1.42199 0.87185 0.79039 0.82039 0.83345 1.20432 1.21841 1.15645 1.23328 0.98274 0.97230 0.99564 1.22465 0.99029 0.96906 0.97698 1.23270 0.98975 0.97641 0.97142 0.89715 0.90126 0.89073 0.85400 0.85055 0.85453 0.85576 0.87883 0.87758 0.92448 0.91797 0.91395 0.89600 0.92452 0.91415 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.00 36.01 0.36 -0.52 16 2 C 0.04 0.62 7.23 -35.80 -0.26 0.36 16 3 O -0.19 -3.21 10.58 3.91 0.04 -3.16 16 4 C 0.05 0.85 7.42 -38.47 -0.29 0.57 16 5 C -0.11 -1.56 10.07 -39.46 -0.40 -1.95 16 6 C -0.10 -1.26 10.01 -39.54 -0.40 -1.66 16 7 C -0.14 -1.97 9.98 -39.94 -0.40 -2.37 16 8 C -0.06 -1.05 10.05 -39.69 -0.40 -1.44 16 9 C -0.11 -1.94 6.38 -105.16 -0.67 -2.61 16 10 C -0.15 -2.64 4.85 -102.66 -0.50 -3.14 16 11 C -0.05 -0.84 5.90 -29.03 -0.17 -1.01 16 12 C 0.45 10.03 7.54 36.01 0.27 10.30 16 13 O -0.48 -12.24 14.44 -18.75 -0.27 -12.51 16 14 O -0.37 -8.55 8.07 -39.25 -0.32 -8.87 16 15 C 0.20 4.74 0.25 -90.96 -0.02 4.72 16 16 C -0.50 -14.10 7.06 -34.44 -0.24 -14.34 16 17 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 19 N -0.88 -26.76 13.96 55.43 0.77 -25.98 16 20 Si 0.86 21.10 24.59 -169.99 -4.18 16.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.23 -5.46 5.60 56.52 0.32 -5.15 16 24 C -0.15 -3.04 7.16 -25.92 -0.19 -3.22 16 25 C -0.12 -2.33 7.81 -25.91 -0.20 -2.53 16 26 C -0.13 -2.77 6.09 -25.91 -0.16 -2.92 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.10 1.35 7.72 -51.93 -0.40 0.95 16 35 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.48 5.73 -51.93 -0.30 1.18 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -34.53 349.53 -8.25 -42.77 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.81 Total: 5.08 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -3.75 Total: -19.51 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.55 Total: -24.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.18 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.53 -8.25 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds