Wall clock time and date at job start Tue Mar 31 2020 10:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34451 * 124.92103 * 2 1 4 4 C 1.34807 * 110.88819 * 180.02562 * 3 2 1 5 5 C 1.38940 * 133.49506 * 179.97438 * 4 3 2 6 6 C 1.37850 * 119.81636 * 179.97438 * 5 4 3 7 7 C 1.38740 * 120.68797 * 0.02562 * 6 5 4 8 8 C 1.36742 * 120.41443 * 0.02562 * 7 6 5 9 9 C 1.39406 * 119.71690 * 359.68200 * 8 7 6 10 10 C 1.33992 * 124.92169 * 180.02562 * 2 1 3 11 11 C 1.50696 * 126.90897 * 359.95844 * 10 2 1 12 12 C 1.50704 * 109.47160 * 90.02416 * 11 10 2 13 13 O 1.20825 * 119.99559 * 5.28052 * 12 11 10 14 14 O 1.34227 * 120.00314 * 185.00431 * 12 11 10 15 15 C 1.45195 * 117.00077 * 183.60056 * 14 12 11 16 16 C 1.50704 * 112.85126 * 53.84977 * 15 14 12 17 17 H 1.07997 * 119.99854 * 245.63444 * 16 15 14 18 18 C 1.37875 * 120.00052 * 65.62982 * 16 15 14 19 19 N 1.31512 * 120.00027 * 183.92292 * 18 16 15 20 20 Si 1.86797 * 119.99998 * 3.92485 * 18 16 15 21 21 H 1.48502 * 109.47370 * 93.73894 * 20 18 16 22 22 H 1.48505 * 109.46976 * 213.74057 * 20 18 16 23 23 H 1.48501 * 109.47269 * 333.73508 * 20 18 16 24 24 C 1.53777 * 113.61642 * 282.54079 * 15 14 12 25 25 C 1.53782 * 87.08550 * 220.01901 * 24 15 14 26 26 C 1.53781 * 113.61410 * 185.04038 * 15 14 12 27 27 H 1.09002 * 109.47580 * 269.98175 * 1 2 3 28 28 H 1.09006 * 109.46959 * 29.97896 * 1 2 3 29 29 H 1.09002 * 109.47066 * 149.97827 * 1 2 3 30 30 H 1.07999 * 120.09052 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.65311 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.79037 * 180.02562 * 7 6 5 33 33 H 1.08008 * 120.13567 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47485 * 330.02781 * 11 10 2 35 35 H 1.09001 * 109.47354 * 210.02498 * 11 10 2 36 36 H 0.96998 * 120.00476 * 180.02562 * 19 18 16 37 37 H 1.09001 * 113.61590 * 334.56822 * 24 15 14 38 38 H 1.09003 * 113.61441 * 105.47308 * 24 15 14 39 39 H 1.08999 * 113.61061 * 270.88790 * 25 24 15 40 40 H 1.08994 * 113.69142 * 139.99114 * 25 24 15 41 41 H 1.08997 * 113.62107 * 254.52775 * 26 15 14 42 42 H 1.08995 * 113.61503 * 25.35544 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5845 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9770 0.8805 -0.0012 7 6 6.0491 -0.5051 -0.0010 8 6 4.9074 -1.2576 -0.0013 9 6 3.6641 -0.6271 0.0048 10 6 2.2740 -1.0986 -0.0005 11 6 1.8041 -2.5305 -0.0003 12 6 1.6472 -3.0079 -1.4210 13 8 1.9821 -2.2960 -2.3380 14 8 1.1406 -4.2262 -1.6676 15 6 1.0928 -4.6518 -3.0550 16 6 2.4305 -4.5574 -3.7426 17 1 2.5727 -3.8584 -4.5535 18 6 3.4728 -5.3633 -3.3363 19 7 4.6609 -5.2274 -3.8835 20 14 3.1974 -6.6482 -2.0087 21 1 2.8686 -7.9509 -2.6412 22 1 4.4309 -6.7906 -1.1942 23 1 2.0737 -6.2244 -1.1352 24 6 -0.0587 -4.0191 -3.8541 25 6 -0.2453 -5.3918 -4.5216 26 6 0.3885 -6.0032 -3.2608 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 4.7118 2.6006 -0.0018 31 1 6.8865 1.4629 -0.0021 32 1 7.0130 -0.9922 -0.0005 33 1 4.9687 -2.3360 -0.0008 34 1 0.8453 -2.5982 0.5137 35 1 2.5365 -3.1532 0.5135 36 1 5.3942 -5.7946 -3.5980 37 1 -0.9038 -3.7155 -3.2362 38 1 0.2651 -3.2389 -4.5431 39 1 0.3559 -5.5252 -5.4210 40 1 -1.2891 -5.6709 -4.6649 41 1 1.0731 -6.8250 -3.4709 42 1 -0.3334 -6.2428 -2.4801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:36 Heat of formation + Delta-G solvation = -50.500666 kcal Electronic energy + Delta-G solvation = -26679.480694 eV Core-core repulsion = 22977.275395 eV Total energy + Delta-G solvation = -3702.205298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.52961 -41.29842 -39.12932 -38.86437 -36.25788 -35.31062 -34.51932 -32.16552 -31.62889 -30.40946 -28.61630 -27.46255 -26.63233 -24.84917 -23.97417 -22.75884 -22.30523 -20.68327 -20.48725 -19.01578 -18.10930 -17.94594 -17.65962 -17.28256 -17.12343 -16.95487 -16.40479 -16.21646 -15.60351 -15.14848 -14.91682 -14.72098 -14.56346 -14.37507 -13.99669 -13.91336 -13.55820 -13.46872 -13.15478 -13.12080 -13.02116 -12.85097 -12.79142 -12.52385 -12.30753 -12.00048 -11.85406 -11.82951 -11.66284 -11.28471 -11.03076 -10.89006 -10.58695 -10.51253 -9.62451 -9.04383 -8.40163 -6.50187 -0.08308 0.34890 1.13686 1.27516 1.30972 1.52061 1.66128 1.69864 2.27356 2.32847 2.73863 3.01177 3.39965 3.54441 3.78934 3.85287 3.87746 3.97900 4.07142 4.09907 4.16928 4.26616 4.36858 4.39081 4.47067 4.51890 4.56670 4.66161 4.72322 4.80042 4.84536 4.86454 4.99123 5.03964 5.13497 5.21865 5.24191 5.31624 5.43635 5.48789 5.54478 5.65094 5.69458 5.90170 6.15278 6.37344 6.58576 7.17339 7.30634 8.75467 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.005194 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.000811 B = 5389.540407 C = 6511.815970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.048 3.952 3 O -0.199 6.199 4 C 0.023 3.977 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.138 4.138 10 C -0.190 4.190 11 C -0.038 4.038 12 C 0.449 3.551 13 O -0.523 6.523 14 O -0.369 6.369 15 C 0.178 3.822 16 C -0.499 4.499 17 H 0.022 0.978 18 C 0.024 3.976 19 N -0.935 5.935 20 Si 0.921 3.079 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.209 1.209 24 C -0.142 4.142 25 C -0.110 4.110 26 C -0.126 4.126 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.148 0.852 35 H 0.111 0.889 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 8.076 13.106 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.000 4.000 3 O -0.101 6.101 4 C -0.023 4.023 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.154 4.154 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.191 4.191 11 C -0.075 4.075 12 C 0.292 3.708 13 O -0.411 6.411 14 O -0.287 6.287 15 C 0.143 3.857 16 C -0.536 4.536 17 H 0.040 0.960 18 C -0.175 4.175 19 N -0.574 5.574 20 Si 0.743 3.257 21 H -0.187 1.187 22 H -0.223 1.223 23 H -0.130 1.130 24 C -0.180 4.180 25 C -0.147 4.147 26 C -0.164 4.164 27 H 0.139 0.861 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.177 0.823 31 H 0.192 0.808 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.166 0.834 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.196 8.482 12.774 16.938 hybrid contribution 1.055 -0.699 -0.365 1.317 sum -6.141 7.783 12.409 15.883 Atomic orbital electron populations 1.20663 0.81655 1.05184 1.05912 1.22763 0.95394 0.82529 0.99321 1.83893 1.15152 1.34177 1.76926 1.19992 0.83978 0.93463 1.04899 1.20365 0.87428 1.00958 1.03994 1.21352 0.97609 0.94087 0.97965 1.21128 0.98355 0.94889 1.00984 1.20480 0.91456 1.00046 0.99722 1.20075 0.94349 0.94059 1.05419 1.20363 0.91314 0.95108 1.12329 1.19735 1.06001 0.91134 0.90621 1.23786 0.74267 0.80193 0.92574 1.90630 1.45281 1.56844 1.48297 1.86490 1.74303 1.33086 1.34782 1.21714 0.93539 0.94340 0.76084 1.20776 0.95081 1.20402 1.17372 0.95987 1.25899 0.94118 0.99173 0.98311 1.70083 1.02218 1.40364 1.44731 0.86200 0.79476 0.79520 0.80498 1.18654 1.22276 1.13045 1.23331 0.97952 0.97543 0.99163 1.22410 1.01384 0.94769 0.96152 1.23305 0.99043 0.95130 0.98873 0.86150 0.88918 0.89121 0.82295 0.80815 0.83352 0.87207 0.83449 0.87102 0.92402 0.88712 0.94359 0.91537 0.87689 0.92594 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.00 71.24 0.71 -0.85 16 2 C 0.05 1.45 7.23 24.72 0.18 1.63 16 3 O -0.20 -6.54 10.58 -8.92 -0.09 -6.64 16 4 C 0.02 0.79 7.42 22.99 0.17 0.96 16 5 C -0.11 -2.91 10.07 22.35 0.23 -2.69 16 6 C -0.09 -2.22 10.01 22.30 0.22 -2.00 16 7 C -0.14 -3.91 9.98 22.04 0.22 -3.69 16 8 C -0.10 -3.57 10.05 22.20 0.22 -3.35 16 9 C -0.14 -5.18 6.38 -20.21 -0.13 -5.31 16 10 C -0.19 -6.65 4.85 -18.60 -0.09 -6.74 16 11 C -0.04 -1.24 5.90 29.10 0.17 -1.07 16 12 C 0.45 19.90 7.54 71.24 0.54 20.44 16 13 O -0.52 -28.15 14.44 21.97 0.32 -27.83 16 14 O -0.37 -16.39 8.07 -51.39 -0.41 -16.81 16 15 C 0.18 8.38 0.25 -11.01 0.00 8.38 16 16 C -0.50 -29.61 7.06 25.60 0.18 -29.43 16 17 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 18 C 0.02 1.45 5.47 84.65 0.46 1.91 16 19 N -0.93 -60.14 13.96 21.45 0.30 -59.84 16 20 Si 0.92 43.85 24.59 68.60 1.69 45.54 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 23 H -0.21 -9.01 5.60 99.48 0.56 -8.46 16 24 C -0.14 -5.79 7.16 31.12 0.22 -5.57 16 25 C -0.11 -3.90 7.81 31.12 0.24 -3.65 16 26 C -0.13 -4.90 6.09 31.12 0.19 -4.71 16 27 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.09 1.84 7.68 -2.39 -0.02 1.82 16 30 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.15 3.42 7.72 -2.39 -0.02 3.40 16 35 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 38 H 0.04 1.75 8.09 -2.39 -0.02 1.73 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.06 2.31 5.73 -2.39 -0.01 2.29 16 42 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -82.80 349.53 6.41 -76.39 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.88 Total: 24.91 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.74 Total: -35.72 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.30 Total: -59.84 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.19 Total: -51.28 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.69 Total: 45.54 kcal Total: -82.80 6.41 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.889 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds