Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31338 * 1 3 3 Si 1.86798 * 120.00421 * 2 1 4 4 H 1.48509 * 109.47011 * 84.69950 * 3 2 1 5 5 H 1.48493 * 109.47154 * 204.70127 * 3 2 1 6 6 H 1.48503 * 109.46932 * 324.70294 * 3 2 1 7 7 C 1.39025 * 119.99912 * 179.72291 * 2 1 3 8 8 H 1.08003 * 119.99752 * 23.26878 * 7 2 1 9 9 N 1.36867 * 120.00314 * 203.27225 * 7 2 1 10 10 C 1.38250 * 125.62437 * 221.56463 * 9 7 2 11 11 C 1.46713 * 125.44711 * 359.96639 * 10 9 7 12 12 O 1.21592 * 120.00089 * 185.26895 * 11 10 9 13 13 O 1.34858 * 120.00027 * 5.26645 * 11 10 9 14 14 C 1.45204 * 117.00206 * 185.56176 * 13 11 10 15 15 C 1.53004 * 109.47212 * 177.23203 * 14 13 11 16 16 N 1.46896 * 109.47239 * 63.77792 * 15 14 13 17 17 C 1.47478 * 111.00342 * 74.03030 * 16 15 14 18 18 C 1.53511 * 87.93391 * 138.70104 * 17 16 15 19 19 C 1.47486 * 110.99852 * 169.99931 * 16 15 14 20 20 C 1.36221 * 109.10602 * 179.97438 * 10 9 7 21 21 C 1.41654 * 107.73906 * 0.02562 * 20 10 9 22 22 C 1.40046 * 133.33496 * 180.02562 * 21 20 10 23 23 C 1.36577 * 119.82568 * 179.29479 * 22 21 20 24 24 C 1.38860 * 120.60299 * 0.60902 * 23 22 21 25 25 C 1.37838 * 120.63794 * 359.61310 * 24 23 22 26 26 C 1.37826 * 125.62323 * 41.25325 * 9 7 2 27 27 H 0.97003 * 120.00048 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46904 * 297.23242 * 14 13 11 29 29 H 1.09001 * 109.47164 * 57.22753 * 14 13 11 30 30 H 1.09005 * 109.46509 * 183.77936 * 15 14 13 31 31 H 1.09003 * 109.46938 * 303.77390 * 15 14 13 32 32 H 1.08998 * 113.47587 * 253.47232 * 17 16 15 33 33 H 1.09010 * 113.47260 * 23.93170 * 17 16 15 34 34 H 1.08994 * 114.16700 * 220.32983 * 18 17 16 35 35 H 1.09000 * 114.33857 * 87.63641 * 18 17 16 36 36 H 1.08995 * 113.47232 * 336.06586 * 19 16 15 37 37 H 1.08999 * 113.46989 * 106.52964 * 19 16 15 38 38 H 1.07998 * 126.12718 * 180.02562 * 20 10 9 39 39 H 1.08001 * 120.08669 * 359.97201 * 22 21 20 40 40 H 1.08002 * 119.69441 * 180.24261 * 23 22 21 41 41 H 1.08004 * 119.68446 * 179.63835 * 24 23 22 42 42 H 1.08004 * 120.09723 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.3830 2.1110 1.3942 5 1 3.5965 1.4103 -0.5850 6 1 1.5054 2.6177 -0.8090 7 6 2.0085 -1.2040 0.0058 8 1 1.5343 -2.1030 -0.3593 9 7 3.2936 -1.2500 0.4743 10 6 4.3344 -1.9577 -0.0977 11 6 4.2390 -2.7826 -1.3072 12 8 5.1945 -3.4404 -1.6715 13 8 3.0914 -2.8114 -2.0149 14 6 3.0261 -3.7423 -3.1274 15 6 1.6350 -3.6822 -3.7617 16 7 1.4122 -2.3451 -4.3276 17 6 2.1856 -2.1612 -5.5698 18 6 0.9578 -1.4571 -6.1642 19 6 0.1890 -2.3168 -5.1511 20 6 5.4628 -1.7666 0.6412 21 6 5.1323 -0.9102 1.7200 22 6 5.8700 -0.3757 2.7837 23 6 5.2624 0.4533 3.6830 24 6 3.9142 0.7626 3.5604 25 6 3.1661 0.2453 2.5248 26 6 3.7650 -0.5938 1.5909 27 1 -0.4850 0.8401 -0.0004 28 1 3.7764 -3.4731 -3.8709 29 1 3.2179 -4.7530 -2.7672 30 1 1.5643 -4.4283 -4.5533 31 1 0.8802 -3.8858 -3.0021 32 1 3.0476 -1.5047 -5.4514 33 1 2.4335 -3.0977 -6.0695 34 1 0.7591 -1.7099 -7.2057 35 1 0.9138 -0.3863 -5.9652 36 1 -0.0958 -3.2948 -5.5391 37 1 -0.6410 -1.7922 -4.6778 38 1 6.4350 -2.1919 0.4404 39 1 6.9194 -0.6098 2.8863 40 1 5.8343 0.8674 4.5002 41 1 3.4473 1.4152 4.2834 42 1 2.1181 0.4913 2.4381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861387995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = 6.524973 kcal Electronic energy + Delta-G solvation = -26385.303921 eV Core-core repulsion = 22717.864191 eV Total energy + Delta-G solvation = -3667.439730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49440 -41.24485 -40.62854 -37.83832 -37.48717 -35.40941 -33.15376 -33.04975 -30.92776 -30.14593 -28.10067 -26.77414 -26.72204 -25.40118 -23.07456 -22.81727 -22.20016 -21.01566 -20.75479 -20.07910 -18.87406 -17.82886 -17.73472 -17.33934 -16.84574 -16.71773 -16.58593 -16.20023 -15.75558 -15.45742 -15.01929 -14.91488 -14.69876 -14.40111 -14.22876 -13.96834 -13.84749 -13.69017 -13.47398 -13.16426 -12.79231 -12.57250 -12.49235 -12.31010 -12.24810 -12.02935 -11.94644 -11.77786 -11.55523 -11.49610 -11.44092 -11.27031 -10.42421 -9.75133 -9.08396 -8.84733 -8.69512 -6.42250 -0.19820 0.87311 1.01292 1.17018 1.23942 1.32949 1.71660 2.02618 2.14761 2.40720 2.76735 3.01890 3.14112 3.48690 3.72380 3.80298 3.90149 4.01675 4.09043 4.19660 4.29304 4.35288 4.36353 4.39269 4.45835 4.55938 4.63054 4.65373 4.75294 4.77215 4.81251 4.92774 5.01141 5.09550 5.20109 5.25895 5.30167 5.38610 5.39313 5.68532 5.78590 5.83338 5.96271 6.10857 6.13594 6.40012 6.69826 6.88981 7.18018 8.25759 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.005042 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.848751 B = 5551.976172 C = 6771.865587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.222 1.222 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.277 5.277 10 C -0.046 4.046 11 C 0.540 3.460 12 O -0.537 6.537 13 O -0.330 6.330 14 C 0.064 3.936 15 C 0.030 3.970 16 N -0.504 5.504 17 C -0.008 4.008 18 C -0.133 4.133 19 C -0.002 4.002 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.072 4.072 23 C -0.149 4.149 24 C -0.111 4.111 25 C -0.138 4.138 26 C 0.036 3.964 27 H 0.292 0.708 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -1.628 -5.216 6.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.145 1.145 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.115 0.885 9 N 0.058 4.942 10 C -0.158 4.158 11 C 0.388 3.612 12 O -0.430 6.430 13 O -0.245 6.245 14 C -0.010 4.010 15 C -0.099 4.099 16 N -0.227 5.227 17 C -0.137 4.137 18 C -0.170 4.170 19 C -0.130 4.130 20 C -0.174 4.174 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.168 4.168 24 C -0.131 4.131 25 C -0.158 4.158 26 C -0.078 4.078 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.152 -1.340 -4.970 6.036 hybrid contribution -0.277 -0.263 -1.035 1.103 sum 2.875 -1.603 -6.004 6.848 Atomic orbital electron populations 1.69738 1.07339 1.30415 1.40435 1.25755 0.95539 1.00728 0.92625 0.86465 0.78802 0.80294 0.81370 1.14525 1.21142 1.19960 1.19110 0.85441 0.97922 1.44745 0.88502 1.40423 1.06631 1.31352 1.15799 1.19649 0.89964 1.08521 0.97624 1.20031 0.80856 0.78442 0.81848 1.90743 1.38825 1.43661 1.69755 1.86986 1.36744 1.58565 1.42216 1.23261 0.98905 0.92076 0.86739 1.22723 0.95117 0.92157 0.99883 1.69134 1.06087 1.26899 1.20589 1.23896 0.98024 1.01214 0.90518 1.23012 0.94895 0.99566 0.99562 1.23820 0.94393 1.00896 0.93936 1.20749 0.96902 1.03424 0.96354 1.18331 0.93068 1.03830 0.99646 1.20647 0.99979 0.96274 0.92142 1.20907 0.94538 1.00447 1.00910 1.21133 0.94948 1.00188 0.96803 1.20342 0.99783 0.99701 0.95953 1.18883 0.95182 1.02667 0.91040 0.89768 0.91197 0.90074 0.88335 0.90860 0.91669 0.89024 0.87718 0.90331 0.88988 0.91342 0.82120 0.83341 0.82372 0.83454 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.70 13.95 21.67 0.30 -46.40 16 2 C 0.07 3.55 4.79 84.96 0.41 3.96 16 3 Si 0.91 43.67 24.56 68.60 1.69 45.35 16 4 H -0.22 -9.69 5.60 99.48 0.56 -9.13 16 5 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.34 -19.47 9.03 84.10 0.76 -18.71 16 8 H 0.10 5.92 7.21 -2.91 -0.02 5.90 16 9 N -0.28 -14.68 2.42 -331.41 -0.80 -15.48 16 10 C -0.05 -2.29 6.76 39.88 0.27 -2.02 16 11 C 0.54 25.67 7.90 70.04 0.55 26.22 16 12 O -0.54 -24.91 16.65 19.54 0.33 -24.59 16 13 O -0.33 -15.06 8.04 -57.72 -0.46 -15.53 16 14 C 0.06 2.18 5.65 71.98 0.41 2.58 16 15 C 0.03 0.86 5.22 86.31 0.45 1.31 16 16 N -0.50 -16.15 6.35 -928.01 -5.89 -22.04 16 17 C -0.01 -0.19 6.95 83.57 0.58 0.39 16 18 C -0.13 -2.85 8.47 30.94 0.26 -2.59 16 19 C 0.00 -0.05 7.70 83.57 0.64 0.60 16 20 C -0.15 -6.50 10.55 22.64 0.24 -6.27 16 21 C -0.14 -6.21 6.16 -21.34 -0.13 -6.34 16 22 C -0.07 -2.41 10.06 22.32 0.22 -2.18 16 23 C -0.15 -4.47 9.97 22.03 0.22 -4.26 16 24 C -0.11 -3.79 10.02 22.32 0.22 -3.57 16 25 C -0.14 -6.05 6.82 22.38 0.15 -5.89 16 26 C 0.04 1.76 5.21 39.07 0.20 1.96 16 27 H 0.29 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.07 2.26 7.57 -2.39 -0.02 2.24 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.10 2.01 7.56 -2.38 -0.02 1.99 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 1.74 7.70 -2.38 -0.02 1.72 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.74 7.77 -2.39 -0.02 1.72 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.16 6.16 8.06 -2.91 -0.02 6.14 16 39 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.10 4.78 5.89 -2.91 -0.02 4.76 16 Total: -1.00 -68.96 346.15 1.50 -67.47 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.88 Total: 26.03 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.46 Total: -14.80 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -6.39 Total: -83.93 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.14 Total: -40.12 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.69 Total: 45.35 kcal Total: -68.96 1.50 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861387995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.993 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds