Wall clock time and date at job start Tue Mar 31 2020 10:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99992 * 2 1 4 4 C 1.38756 * 120.05090 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93864 * 179.68149 * 4 3 2 6 6 C 1.38285 * 120.05520 * 0.56901 * 5 4 3 7 7 C 1.50707 * 119.94300 * 179.72270 * 6 5 4 8 8 O 1.42898 * 109.47020 * 269.72582 * 7 6 5 9 9 C 1.35896 * 116.99435 * 179.97438 * 8 7 6 10 10 C 1.38827 * 120.02371 * 0.02562 * 9 8 7 11 11 C 1.38189 * 120.07970 * 179.74213 * 10 9 8 12 12 C 1.38150 * 120.12814 * 0.26171 * 11 10 9 13 13 C 1.38896 * 120.03743 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.04371 * 180.02562 * 13 12 11 15 15 C 1.34834 * 117.00669 * 174.46733 * 14 13 12 16 16 H 1.07999 * 119.99389 * 5.06001 * 15 14 13 17 17 C 1.38644 * 120.00140 * 185.06143 * 15 14 13 18 18 N 1.31561 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47088 * 59.99852 * 19 17 15 21 21 H 1.48500 * 109.46902 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46800 * 299.99640 * 19 17 15 23 23 C 1.38580 * 120.01785 * 180.25709 * 9 8 7 24 24 C 1.38242 * 120.11166 * 359.45137 * 6 5 4 25 25 C 1.38168 * 120.05667 * 0.25195 * 24 6 5 26 26 C 1.50700 * 120.02605 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47303 * 299.99815 * 1 2 3 28 28 H 1.09000 * 109.47442 * 59.99904 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.02932 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97328 * 180.31520 * 5 4 3 32 32 H 1.09004 * 109.46628 * 149.72766 * 7 6 5 33 33 H 1.08997 * 109.46892 * 29.72910 * 7 6 5 34 34 H 1.07992 * 119.95799 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.93592 * 180.27629 * 11 10 9 36 36 H 1.07994 * 119.98454 * 180.02562 * 12 11 10 37 37 H 0.97007 * 119.99982 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.06310 * 0.02562 * 23 9 8 39 39 H 1.08010 * 119.97139 * 180.27261 * 24 6 5 40 40 H 1.08999 * 109.46880 * 90.00220 * 26 25 24 41 41 H 1.08995 * 109.46957 * 209.99918 * 26 25 24 42 42 H 1.08997 * 109.47377 * 330.00559 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0072 6 6 3.3018 3.6759 0.0014 7 6 3.9859 5.0187 0.0024 8 8 4.2021 5.4441 -1.3446 9 6 4.8132 6.6449 -1.5217 10 6 5.1973 7.3979 -0.4204 11 6 5.8236 8.6167 -0.5992 12 6 6.0646 9.0922 -1.8737 13 6 5.6780 8.3453 -2.9791 14 8 5.9152 8.8121 -4.2315 15 6 5.6199 7.9891 -5.2579 16 1 5.1385 7.0411 -5.0684 17 6 5.9342 8.3598 -6.5563 18 7 6.5202 9.5149 -6.7871 19 14 5.5244 7.2198 -7.9783 20 1 4.0588 6.9842 -8.0172 21 1 5.9602 7.8431 -9.2538 22 1 6.2291 5.9257 -7.7941 23 6 5.0489 7.1207 -2.8017 24 6 4.0558 2.5172 0.0004 25 6 3.4310 1.2849 0.0000 26 6 4.2537 0.0223 -0.0017 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2127 2.3203 0.0005 31 1 1.3339 4.5114 0.0128 32 1 4.9439 4.9379 0.5161 33 1 3.3579 5.7460 0.5168 34 1 5.0106 7.0287 0.5771 35 1 6.1255 9.1986 0.2592 36 1 6.5546 10.0448 -2.0107 37 1 6.7397 9.7745 -7.6956 38 1 4.7471 6.5383 -3.6595 39 1 5.1344 2.5754 0.0004 40 1 4.4528 -0.2829 1.0256 41 1 3.7060 -0.7676 -0.5157 42 1 5.1973 0.2041 -0.5160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864047565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:30 Heat of formation + Delta-G solvation = -54.095794 kcal Electronic energy + Delta-G solvation = -24495.612850 eV Core-core repulsion = 20793.251655 eV Total energy + Delta-G solvation = -3702.361195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54532 -39.57329 -38.31476 -37.50397 -35.59657 -33.21129 -32.24646 -31.44045 -29.50163 -28.58893 -28.01287 -27.18390 -25.68656 -25.30357 -22.25287 -21.85520 -21.52309 -20.44177 -18.26843 -18.19820 -17.65135 -16.78437 -16.07196 -15.78132 -15.61416 -15.18530 -15.15534 -14.72883 -14.35968 -14.23691 -13.98201 -13.73962 -13.52285 -13.28523 -13.15677 -12.88845 -12.43410 -12.36989 -12.24942 -12.19014 -11.62206 -11.57783 -11.44262 -11.28157 -11.06167 -10.94449 -10.93529 -10.54706 -10.36449 -10.25513 -9.42707 -9.00339 -8.81541 -8.29267 -7.68660 -7.23688 -6.43973 -4.03336 1.12129 1.15087 2.23806 2.35870 2.99307 3.16209 3.17690 3.19926 3.30499 3.94712 4.00652 4.51165 4.56821 4.58661 4.73016 4.77542 4.82777 5.05112 5.09648 5.10476 5.12566 5.24588 5.27528 5.36876 5.40800 5.48294 5.50766 5.60275 5.72677 5.80824 6.00186 6.11155 6.14508 6.18841 6.29477 6.41609 6.44718 6.56207 6.69187 7.04253 7.11051 7.12460 7.24411 7.44230 7.59035 8.01577 8.08046 9.01769 9.69553 10.73647 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013471 B = 0.002856 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.097727 B = 9800.007105 C =11166.267420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.208 4.208 5 C -0.061 4.061 6 C -0.121 4.121 7 C 0.108 3.892 8 O -0.314 6.314 9 C 0.166 3.834 10 C -0.298 4.298 11 C -0.044 4.044 12 C -0.221 4.221 13 C 0.183 3.817 14 O -0.171 6.171 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.041 3.959 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.264 4.264 24 C -0.058 4.058 25 C -0.121 4.121 26 C -0.104 4.104 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.271 0.729 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -16.302 15.503 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.085 3.915 4 C -0.226 4.226 5 C -0.079 4.079 6 C -0.121 4.121 7 C 0.033 3.967 8 O -0.228 6.228 9 C 0.122 3.878 10 C -0.318 4.318 11 C -0.062 4.062 12 C -0.240 4.240 13 C 0.129 3.871 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.164 4.164 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.284 4.284 24 C -0.077 4.077 25 C -0.122 4.122 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.207 -16.283 15.049 24.008 hybrid contribution -0.552 -0.302 -0.499 0.804 sum -9.760 -16.585 14.549 24.124 Atomic orbital electron populations 1.23062 0.78462 1.03876 1.01459 1.86052 1.21266 1.26884 1.88640 1.18864 0.91820 0.84160 0.96705 1.21183 0.99998 0.92140 1.09314 1.20864 0.93802 0.97287 0.95963 1.19477 0.93553 0.93954 1.05131 1.21381 0.99445 0.92305 0.83570 1.86109 1.74897 1.34385 1.27438 1.18659 0.91685 0.83672 0.93820 1.20639 1.14893 0.99632 0.96616 1.20400 0.95683 0.94433 0.95719 1.20155 1.10858 1.02555 0.90479 1.19033 0.90900 0.90518 0.86678 1.83999 1.72752 1.40620 1.10002 1.21335 1.40438 1.01254 0.83848 0.88897 1.25289 0.96194 0.97107 0.97781 1.70036 1.37933 1.19977 1.21761 0.85781 0.79181 0.79342 0.79179 1.19431 1.20261 1.19404 1.20328 1.12971 0.99999 0.95143 1.20843 1.00028 0.90367 0.96422 1.19232 0.90607 0.96146 1.06182 1.20599 0.98910 0.94353 1.02189 0.92653 0.92553 0.88278 0.85294 0.85454 0.91474 0.91524 0.87099 0.86767 0.86385 0.91938 0.84837 0.85006 0.91465 0.91213 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.20 9.54 -19.44 -0.19 -3.39 16 3 C 0.13 1.47 6.66 -39.22 -0.26 1.21 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.06 -0.71 9.69 -39.60 -0.38 -1.09 16 6 C -0.12 -1.54 5.51 -104.60 -0.58 -2.11 16 7 C 0.11 1.47 4.86 36.01 0.18 1.65 16 8 O -0.31 -5.72 10.12 -19.41 -0.20 -5.92 16 9 C 0.17 3.35 6.68 -39.24 -0.26 3.08 16 10 C -0.30 -5.33 9.04 -39.38 -0.36 -5.69 16 11 C -0.04 -0.80 10.03 -39.63 -0.40 -1.20 16 12 C -0.22 -4.76 9.99 -39.37 -0.39 -5.15 16 13 C 0.18 4.56 6.65 -39.13 -0.26 4.30 16 14 O -0.17 -4.96 9.76 0.04 0.00 -4.95 16 15 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 16 H 0.09 2.49 5.20 -52.49 -0.27 2.22 16 17 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 18 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 C -0.26 -6.16 9.10 -39.25 -0.36 -6.52 16 24 C -0.06 -0.70 9.35 -39.61 -0.37 -1.07 16 25 C -0.12 -1.39 5.89 -104.48 -0.62 -2.01 16 26 C -0.10 -0.97 9.79 36.01 0.35 -0.62 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 33 H 0.07 0.82 7.60 -51.93 -0.39 0.42 16 34 H 0.11 1.63 6.29 -52.49 -0.33 1.30 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.13 3.20 5.64 -52.49 -0.30 2.91 16 39 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 42 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.69 357.44 -7.43 -40.12 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.30 Total: 4.05 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -2.87 Total: -26.49 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.76 Total: -24.71 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.38 Total: -14.26 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.69 -7.43 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864047565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.972 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds