Wall clock time and date at job start Tue Mar 31 2020 10:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99992 * 2 1 4 4 C 1.38756 * 120.05090 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93864 * 179.68149 * 4 3 2 6 6 C 1.38285 * 120.05520 * 0.56901 * 5 4 3 7 7 C 1.50707 * 119.94300 * 179.72270 * 6 5 4 8 8 O 1.42898 * 109.47020 * 269.72582 * 7 6 5 9 9 C 1.35896 * 116.99435 * 179.97438 * 8 7 6 10 10 C 1.38827 * 120.02371 * 0.02562 * 9 8 7 11 11 C 1.38189 * 120.07970 * 179.74213 * 10 9 8 12 12 C 1.38150 * 120.12814 * 0.26171 * 11 10 9 13 13 C 1.38896 * 120.03743 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.04371 * 180.02562 * 13 12 11 15 15 C 1.34834 * 117.00669 * 174.46733 * 14 13 12 16 16 H 1.07999 * 119.99389 * 5.06001 * 15 14 13 17 17 C 1.38644 * 120.00140 * 185.06143 * 15 14 13 18 18 N 1.31561 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47088 * 59.99852 * 19 17 15 21 21 H 1.48500 * 109.46902 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46800 * 299.99640 * 19 17 15 23 23 C 1.38580 * 120.01785 * 180.25709 * 9 8 7 24 24 C 1.38242 * 120.11166 * 359.45137 * 6 5 4 25 25 C 1.38168 * 120.05667 * 0.25195 * 24 6 5 26 26 C 1.50700 * 120.02605 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47303 * 299.99815 * 1 2 3 28 28 H 1.09000 * 109.47442 * 59.99904 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.02932 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97328 * 180.31520 * 5 4 3 32 32 H 1.09004 * 109.46628 * 149.72766 * 7 6 5 33 33 H 1.08997 * 109.46892 * 29.72910 * 7 6 5 34 34 H 1.07992 * 119.95799 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.93592 * 180.27629 * 11 10 9 36 36 H 1.07994 * 119.98454 * 180.02562 * 12 11 10 37 37 H 0.97007 * 119.99982 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.06310 * 0.02562 * 23 9 8 39 39 H 1.08010 * 119.97139 * 180.27261 * 24 6 5 40 40 H 1.08999 * 109.46880 * 90.00220 * 26 25 24 41 41 H 1.08995 * 109.46957 * 209.99918 * 26 25 24 42 42 H 1.08997 * 109.47377 * 330.00559 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0072 6 6 3.3018 3.6759 0.0014 7 6 3.9859 5.0187 0.0024 8 8 4.2021 5.4441 -1.3446 9 6 4.8132 6.6449 -1.5217 10 6 5.1973 7.3979 -0.4204 11 6 5.8236 8.6167 -0.5992 12 6 6.0646 9.0922 -1.8737 13 6 5.6780 8.3453 -2.9791 14 8 5.9152 8.8121 -4.2315 15 6 5.6199 7.9891 -5.2579 16 1 5.1385 7.0411 -5.0684 17 6 5.9342 8.3598 -6.5563 18 7 6.5202 9.5149 -6.7871 19 14 5.5244 7.2198 -7.9783 20 1 4.0588 6.9842 -8.0172 21 1 5.9602 7.8431 -9.2538 22 1 6.2291 5.9257 -7.7941 23 6 5.0489 7.1207 -2.8017 24 6 4.0558 2.5172 0.0004 25 6 3.4310 1.2849 0.0000 26 6 4.2537 0.0223 -0.0017 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2127 2.3203 0.0005 31 1 1.3339 4.5114 0.0128 32 1 4.9439 4.9379 0.5161 33 1 3.3579 5.7460 0.5168 34 1 5.0106 7.0287 0.5771 35 1 6.1255 9.1986 0.2592 36 1 6.5546 10.0448 -2.0107 37 1 6.7397 9.7745 -7.6956 38 1 4.7471 6.5383 -3.6595 39 1 5.1344 2.5754 0.0004 40 1 4.4528 -0.2829 1.0256 41 1 3.7060 -0.7676 -0.5157 42 1 5.1973 0.2041 -0.5160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864047565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:30 Heat of formation + Delta-G solvation = -73.187335 kcal Electronic energy + Delta-G solvation = -24496.440721 eV Core-core repulsion = 20793.251655 eV Total energy + Delta-G solvation = -3703.189066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44796 -41.04632 -39.84439 -38.52011 -37.21155 -34.29671 -34.03530 -32.43949 -31.02223 -30.26059 -28.63623 -28.03434 -27.34899 -26.62494 -23.53890 -23.12243 -22.85681 -21.58268 -19.96027 -19.47203 -18.97136 -17.63777 -17.42512 -17.02535 -16.78512 -16.71285 -16.36675 -16.08634 -15.85841 -15.47072 -15.35401 -14.84345 -14.67008 -14.45929 -14.33421 -14.11502 -14.03790 -13.47984 -13.28989 -13.03795 -12.97516 -12.85318 -12.62533 -12.61184 -12.40219 -12.20238 -12.12424 -11.85015 -11.80841 -11.62377 -11.35081 -10.79525 -9.84440 -9.37546 -9.13373 -8.94179 -8.49400 -6.18427 0.22325 0.30628 0.59149 0.69171 1.33423 1.44201 1.49525 2.15644 2.22236 2.33721 2.80327 2.88262 3.14047 3.49290 3.71294 3.74205 3.84053 4.05095 4.10266 4.22197 4.29842 4.32852 4.38119 4.38343 4.45981 4.47164 4.60469 4.64361 4.68554 4.73484 4.81525 4.86351 4.92277 5.02854 5.09946 5.21743 5.28665 5.37888 5.43978 5.55598 5.62599 5.66102 5.75015 5.95165 6.01329 6.38057 6.58914 6.95128 7.72703 8.73053 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013471 B = 0.002856 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.097727 B = 9800.007105 C =11166.267420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.123 3.877 4 C -0.210 4.210 5 C -0.070 4.070 6 C -0.140 4.140 7 C 0.102 3.898 8 O -0.330 6.330 9 C 0.169 3.831 10 C -0.273 4.273 11 C -0.027 4.027 12 C -0.237 4.237 13 C 0.149 3.851 14 O -0.222 6.222 15 C -0.417 4.417 16 H 0.096 0.904 17 C -0.018 4.018 18 N -0.916 5.916 19 Si 1.015 2.985 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.286 4.286 24 C -0.068 4.068 25 C -0.136 4.136 26 C -0.101 4.101 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.119 0.881 37 H 0.275 0.725 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 -18.138 18.064 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.088 4.088 6 C -0.140 4.140 7 C 0.028 3.972 8 O -0.244 6.244 9 C 0.123 3.877 10 C -0.292 4.292 11 C -0.045 4.045 12 C -0.256 4.256 13 C 0.098 3.902 14 O -0.129 6.129 15 C -0.493 4.493 16 H 0.113 0.887 17 C -0.216 4.216 18 N -0.554 5.554 19 Si 0.834 3.166 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.306 4.306 24 C -0.086 4.086 25 C -0.137 4.137 26 C -0.158 4.158 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.431 -18.147 17.677 27.397 hybrid contribution -0.305 0.099 -0.898 0.954 sum -10.736 -18.048 16.779 26.879 Atomic orbital electron populations 1.23358 0.76528 1.05637 1.02215 1.86042 1.23302 1.26396 1.88370 1.19073 0.92098 0.84875 0.96223 1.21447 1.01242 0.91606 1.08563 1.21091 0.93691 0.98206 0.95785 1.19525 0.94122 0.93690 1.06701 1.21719 1.00888 0.93189 0.81394 1.86107 1.74228 1.33266 1.30835 1.18676 0.91203 0.84611 0.93162 1.21188 1.11649 0.98501 0.97878 1.20948 0.93487 0.94516 0.95553 1.20465 1.11348 1.02692 0.91121 1.19588 0.92212 0.91979 0.86408 1.83958 1.75437 1.42011 1.11446 1.21739 1.41163 1.01704 0.84694 0.88671 1.26536 0.95786 0.98869 1.00369 1.70165 1.40343 1.22310 1.22588 0.84704 0.79408 0.77149 0.75316 1.18329 1.19029 1.18396 1.20311 1.14046 0.99826 0.96382 1.21010 1.00561 0.90512 0.96496 1.19533 0.91269 0.96748 1.06155 1.20611 0.98793 0.93425 1.02958 0.91466 0.92142 0.86175 0.83046 0.84323 0.89753 0.89636 0.82511 0.81809 0.86248 0.91642 0.86943 0.84247 0.90338 0.91446 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.07 9.54 -92.49 -0.88 -6.95 16 3 C 0.12 2.59 6.66 22.51 0.15 2.74 16 4 C -0.21 -4.05 9.04 22.37 0.20 -3.85 16 5 C -0.07 -1.48 9.69 22.26 0.22 -1.27 16 6 C -0.14 -3.29 5.51 -19.85 -0.11 -3.40 16 7 C 0.10 2.47 4.86 71.24 0.35 2.81 16 8 O -0.33 -11.48 10.12 -92.38 -0.93 -12.42 16 9 C 0.17 6.55 6.68 22.49 0.15 6.70 16 10 C -0.27 -8.66 9.04 22.40 0.20 -8.46 16 11 C -0.03 -0.89 10.03 22.24 0.22 -0.67 16 12 C -0.24 -10.15 9.99 22.41 0.22 -9.93 16 13 C 0.15 7.74 6.65 22.56 0.15 7.89 16 14 O -0.22 -13.77 9.76 -22.79 -0.22 -13.99 16 15 C -0.42 -25.26 9.49 67.92 0.64 -24.62 16 16 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.02 5.49 84.83 0.47 -0.55 16 18 N -0.92 -56.94 13.67 21.61 0.30 -56.64 16 19 Si 1.02 44.29 29.55 68.60 2.03 46.31 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.29 -13.71 9.10 22.49 0.20 -13.50 16 24 C -0.07 -1.52 9.35 22.25 0.21 -1.31 16 25 C -0.14 -2.95 5.89 -19.77 -0.12 -3.07 16 26 C -0.10 -1.75 9.79 71.24 0.70 -1.05 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 29 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.08 1.74 7.60 -2.38 -0.02 1.73 16 33 H 0.09 1.74 7.60 -2.39 -0.02 1.72 16 34 H 0.16 3.60 6.29 -2.91 -0.02 3.58 16 35 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 38 H 0.11 5.75 5.64 -2.91 -0.02 5.73 16 39 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.18 7.53 -2.39 -0.02 1.16 16 42 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -76.30 357.44 6.29 -70.00 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.04 Total: 23.93 kcal Atomic # 6 Polarization: -55.22 SS G_CDS: 4.97 Total: -50.24 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.30 Total: -56.64 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -2.04 Total: -33.36 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.30 6.29 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864047565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.183 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds