Wall clock time and date at job start Tue Mar 31 2020 10:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35073 * 125.97678 * 2 1 4 4 C 1.35284 * 107.83767 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 126.07014 * 179.97438 * 4 3 2 6 6 C 1.40465 * 107.85889 * 359.97438 * 4 3 2 7 7 N 1.40223 * 125.96292 * 179.97438 * 6 4 3 8 8 C 1.34777 * 119.99502 * 180.02562 * 7 6 4 9 9 O 1.21593 * 120.00265 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99726 * 179.72660 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27548 * 10 8 7 12 12 C 1.52990 * 109.47304 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47343 * 299.99566 * 12 11 10 14 14 C 1.52993 * 109.47459 * 59.99679 * 12 11 10 15 15 C 1.53004 * 109.47532 * 179.97438 * 12 11 10 16 16 C 1.50694 * 109.47778 * 179.97438 * 15 12 11 17 17 H 1.08010 * 119.99443 * 359.97438 * 16 15 12 18 18 C 1.37869 * 120.00313 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00096 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47041 * 60.00654 * 20 18 16 22 22 H 1.48496 * 109.47105 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47194 * 300.00214 * 20 18 16 24 24 N 1.31204 * 108.06748 * 0.23087 * 6 4 3 25 25 H 1.09001 * 109.47213 * 90.00019 * 1 2 3 26 26 H 1.08998 * 109.46792 * 209.99923 * 1 2 3 27 27 H 1.08994 * 109.47218 * 329.99804 * 1 2 3 28 28 H 1.07997 * 126.07829 * 0.03576 * 3 2 1 29 29 H 0.97000 * 120.00015 * 359.97438 * 7 6 4 30 30 H 0.97000 * 119.99736 * 0.26820 * 10 8 7 31 31 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 32 32 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 33 33 H 1.09007 * 109.46957 * 59.99810 * 13 12 11 34 34 H 1.08994 * 109.47790 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.46660 * 300.00515 * 13 12 11 36 36 H 1.09000 * 109.47594 * 59.99927 * 14 12 11 37 37 H 1.09008 * 109.47644 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47377 * 300.00204 * 14 12 11 39 39 H 1.08998 * 109.46729 * 300.00089 * 15 12 11 40 40 H 1.09002 * 109.47033 * 59.99141 * 15 12 11 41 41 H 0.96994 * 120.00789 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2585 1.0931 0.0000 4 6 3.5441 0.6719 -0.0006 5 17 4.9523 1.6872 -0.0014 6 6 3.5373 -0.7327 -0.0003 7 7 4.6682 -1.5617 -0.0013 8 6 4.5215 -2.9015 -0.0015 9 8 3.4086 -3.3913 -0.0003 10 7 5.6085 -3.6984 -0.0079 11 6 5.4491 -5.1547 -0.0142 12 6 6.8275 -5.8185 -0.0215 13 6 7.5962 -5.3843 -1.2711 14 6 7.6038 -5.3958 1.2273 15 6 6.6611 -7.3395 -0.0274 16 6 8.0187 -7.9934 -0.0352 17 1 8.9112 -7.3849 -0.0363 18 6 8.1217 -9.3682 -0.0409 19 7 7.0351 -10.1091 -0.0401 20 14 9.8047 -10.1788 -0.0498 21 1 10.5585 -9.7678 1.1618 22 1 9.6431 -11.6549 -0.0557 23 1 10.5503 -9.7581 -1.2632 24 7 2.2880 -1.1335 -0.0047 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9258 2.1205 0.0005 29 1 5.5560 -1.1710 -0.0026 30 1 6.4963 -3.3076 -0.0085 31 1 4.9011 -5.4640 0.8758 32 1 4.8964 -5.4559 -0.9041 33 1 7.7147 -4.3007 -1.2665 34 1 8.5780 -5.8575 -1.2766 35 1 7.0430 -5.6855 -2.1608 36 1 7.0563 -5.7051 2.1176 37 1 8.5860 -5.8684 1.2219 38 1 7.7224 -4.3123 1.2320 39 1 6.1137 -7.6485 0.8631 40 1 6.1078 -7.6410 -0.9168 41 1 7.1074 -11.0763 -0.0438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881176688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:13 Heat of formation + Delta-G solvation = 17.402348 kcal Electronic energy + Delta-G solvation = -23531.045565 eV Core-core repulsion = 19893.937415 eV Total energy + Delta-G solvation = -3637.108150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48233 -41.08987 -38.83024 -37.43271 -36.13383 -35.29226 -34.03987 -32.98422 -31.00128 -29.12091 -28.01027 -27.93983 -26.90811 -24.94830 -23.22797 -22.36632 -21.29626 -20.02558 -19.26940 -18.52681 -18.31731 -17.20067 -17.06375 -16.54061 -16.34853 -15.95983 -15.62106 -15.33449 -15.29861 -14.69989 -14.59435 -14.31413 -14.17073 -13.91706 -13.76286 -13.40323 -12.85294 -12.74365 -12.68789 -12.55996 -12.34997 -12.30727 -12.21115 -11.99531 -11.87807 -11.71900 -11.51911 -11.24219 -10.97245 -10.85714 -10.49061 -10.24544 -9.85079 -9.16624 -8.12258 -6.20134 0.75995 0.90391 1.28159 1.31460 1.43753 1.45865 1.52987 2.00294 2.25693 2.45663 3.10058 3.22154 3.50373 3.94589 3.99243 4.09871 4.23749 4.35519 4.47438 4.49094 4.59036 4.70154 4.73962 4.75221 4.79333 4.98677 5.10491 5.14712 5.37056 5.44382 5.49646 5.52522 5.55002 5.58943 5.69281 5.82166 5.91608 5.96775 6.32009 6.48470 6.94561 6.99230 7.43033 7.47563 9.00208 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.002478 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.025255 B =11295.703576 C =12110.039098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.368 5.368 3 C 0.111 3.889 4 C -0.225 4.225 5 Cl -0.028 7.028 6 C 0.312 3.688 7 N -0.638 5.638 8 C 0.695 3.305 9 O -0.595 6.595 10 N -0.714 5.714 11 C 0.162 3.838 12 C -0.063 4.063 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.040 3.960 16 C -0.513 4.513 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.266 1.266 24 N -0.321 5.321 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.235 0.765 29 H 0.431 0.569 30 H 0.412 0.588 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.070 0.930 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 29.803 0.182 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.151 5.151 3 C -0.039 4.039 4 C -0.266 4.266 5 Cl 0.000 7.000 6 C 0.054 3.946 7 N -0.293 5.293 8 C 0.394 3.606 9 O -0.471 6.471 10 N -0.371 5.371 11 C 0.038 3.962 12 C -0.063 4.063 13 C -0.179 4.179 14 C -0.179 4.179 15 C 0.002 3.998 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.581 5.581 20 Si 0.784 3.216 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.191 1.191 24 N -0.151 5.151 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.251 0.749 29 H 0.270 0.730 30 H 0.251 0.749 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.055 28.171 0.179 29.591 hybrid contribution 1.903 -0.296 -0.024 1.926 sum -7.152 27.875 0.155 28.778 Atomic orbital electron populations 1.22316 0.70568 1.06339 1.05070 1.48614 1.08100 1.02541 1.55835 1.22871 0.87888 0.95671 0.97419 1.20415 0.90713 0.88008 1.27477 1.98323 1.37394 1.66272 1.98044 1.19024 0.87423 0.88382 0.99761 1.41793 1.07519 1.03321 1.76665 1.16098 0.85053 0.81160 0.78239 1.91003 1.25198 1.74103 1.56752 1.44952 1.07591 1.06170 1.78393 1.21132 0.97635 0.77215 1.00260 1.20706 0.92660 0.95685 0.97259 1.21704 1.00268 1.00339 0.95610 1.21701 1.00230 1.00377 0.95612 1.18970 0.96060 0.90343 0.94423 1.21560 0.93416 0.91362 1.48748 0.90807 1.25955 1.00121 0.98674 0.95507 1.70117 1.30073 1.05286 1.52594 0.85594 0.79991 0.76839 0.79181 1.19106 1.21805 1.19119 1.78187 0.99766 1.07606 1.29558 0.89156 0.90061 0.84900 0.74903 0.72961 0.74936 0.93606 0.93621 0.91091 0.92398 0.94478 0.94466 0.92401 0.91100 0.99535 0.99550 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.47 127.77 1.47 2.34 16 2 N -0.37 -6.92 4.01 -369.49 -1.48 -8.40 16 3 C 0.11 1.51 11.46 83.51 0.96 2.47 16 4 C -0.23 -4.29 6.67 22.13 0.15 -4.14 16 5 Cl -0.03 -0.43 29.18 -2.72 -0.08 -0.51 16 6 C 0.31 8.40 7.82 133.32 1.04 9.44 16 7 N -0.64 -16.32 5.46 -321.16 -1.75 -18.08 16 8 C 0.70 22.89 8.53 179.05 1.53 24.42 16 9 O -0.59 -25.59 15.06 -4.01 -0.06 -25.65 16 10 N -0.71 -20.73 4.96 -478.55 -2.37 -23.11 16 11 C 0.16 5.97 4.56 86.38 0.39 6.36 16 12 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 13 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 14 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 15 C 0.04 2.03 4.04 29.85 0.12 2.15 16 16 C -0.51 -27.52 7.65 25.60 0.20 -27.32 16 17 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 19 N -0.94 -57.62 13.29 21.44 0.28 -57.33 16 20 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 N -0.32 -9.81 10.80 -54.38 -0.59 -10.39 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 29 H 0.43 7.77 8.71 -92.71 -0.81 6.96 16 30 H 0.41 8.97 6.18 -92.71 -0.57 8.40 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.77 6.86 -2.38 -0.02 1.76 16 34 H 0.06 2.06 6.62 -2.39 -0.02 2.05 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.06 2.06 6.62 -2.38 -0.02 2.04 16 38 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.96 355.08 3.11 -77.85 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.31 Total: 13.42 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 7.44 Total: 6.45 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.91 Total: -117.31 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -80.96 3.11 -77.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881176688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.256 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds