Wall clock time and date at job start Tue Mar 31 2020 11:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00151 * 3 2 1 5 5 H 1.48491 * 109.47120 * 30.00495 * 3 2 1 6 6 H 1.48499 * 109.46795 * 150.00473 * 3 2 1 7 7 C 1.37876 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99716 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00077 * 180.02562 * 10 9 7 12 12 O 1.21582 * 119.99847 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99827 * 180.02562 * 11 10 9 14 14 C 1.40166 * 119.99833 * 185.31660 * 13 11 10 15 15 C 1.38972 * 119.92142 * 213.34775 * 14 13 11 16 16 C 1.38230 * 120.39060 * 180.24541 * 15 14 13 17 17 C 1.38332 * 119.97475 * 359.44701 * 16 15 14 18 18 C 1.40101 * 119.90326 * 0.56914 * 17 16 15 19 19 C 1.38653 * 119.91706 * 33.33183 * 14 13 11 20 20 C 1.47917 * 119.20567 * 179.71909 * 18 17 16 21 21 C 1.33313 * 118.23787 * 15.32991 * 20 18 17 22 22 C 1.50522 * 119.03543 * 0.29972 * 21 20 18 23 23 C 1.53465 * 113.36305 * 101.72576 * 22 21 20 24 24 C 1.53829 * 86.98360 * 89.21536 * 23 22 21 25 25 C 1.53420 * 113.43876 * 199.40697 * 22 21 20 26 26 O 1.36047 * 120.81302 * 180.28965 * 17 16 15 27 27 H 0.96997 * 119.99782 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46524 * 60.00220 * 9 7 2 29 29 H 1.08993 * 109.47375 * 300.00374 * 9 7 2 30 30 H 0.97002 * 120.00300 * 0.02562 * 10 9 7 31 31 H 0.97004 * 120.00073 * 5.32166 * 13 11 10 32 32 H 1.08005 * 119.80527 * 359.97438 * 15 14 13 33 33 H 1.08005 * 120.01613 * 179.74848 * 16 15 14 34 34 H 1.08001 * 120.19137 * 359.97438 * 19 14 13 35 35 H 1.07999 * 120.88042 * 195.35731 * 20 18 17 36 36 H 1.08000 * 120.48130 * 180.32242 * 21 20 18 37 37 H 1.09000 * 113.62420 * 203.73906 * 23 22 21 38 38 H 1.08996 * 113.62590 * 334.68469 * 23 22 21 39 39 H 1.09002 * 113.60265 * 270.62465 * 24 23 22 40 40 H 1.09004 * 113.60637 * 139.74954 * 24 23 22 41 41 H 1.08999 * 113.62814 * 25.37975 * 25 22 21 42 42 H 1.09003 * 113.63004 * 156.32713 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0009 12 8 6.1151 -1.8974 -0.0005 13 7 5.7742 -4.0922 -0.0013 14 6 7.1474 -4.3501 0.1112 15 6 7.7026 -5.4455 -0.5394 16 6 9.0546 -5.7118 -0.4309 17 6 9.8651 -4.8789 0.3194 18 6 9.3113 -3.7733 0.9780 19 6 7.9485 -3.5116 0.8711 20 6 10.1910 -2.8965 1.7813 21 6 11.5090 -2.9956 1.6074 22 6 12.0413 -3.9830 0.6037 23 6 12.4672 -3.3350 -0.7206 24 6 13.8574 -3.1493 -0.0889 25 6 13.5170 -4.3406 0.8230 26 8 11.1989 -5.1217 0.4329 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8746 -0.6800 -0.8910 30 1 3.3696 -3.3126 -0.0010 31 1 5.1473 -4.8283 -0.0796 32 1 7.0731 -6.0950 -1.1297 33 1 9.4790 -6.5671 -0.9358 34 1 7.5176 -2.6598 1.3764 35 1 9.7766 -2.1951 2.4902 36 1 12.1850 -2.3766 2.1786 37 1 12.4598 -4.0231 -1.5659 38 1 11.9546 -2.3967 -0.9325 39 1 13.9707 -2.2073 0.4477 40 1 14.6795 -3.3471 -0.7769 41 1 13.8495 -4.2114 1.8529 42 1 13.7995 -5.3064 0.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889734267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:47 Heat of formation + Delta-G solvation = 4.392430 kcal Electronic energy + Delta-G solvation = -25044.402425 eV Core-core repulsion = 21376.870221 eV Total energy + Delta-G solvation = -3667.532204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24809 -40.06681 -38.43158 -36.53358 -34.53287 -34.30971 -33.52974 -32.36803 -30.08969 -29.05338 -27.47472 -26.09725 -24.96621 -23.53311 -23.09868 -22.02365 -20.86729 -20.27533 -18.87454 -18.37109 -17.98209 -16.80126 -16.42329 -16.30066 -15.61441 -15.33702 -14.96056 -14.73714 -14.47611 -14.40355 -14.18821 -13.74347 -13.39024 -13.17687 -12.90645 -12.80781 -12.55516 -12.41173 -12.30722 -12.20784 -11.85328 -11.53609 -11.13601 -11.03038 -10.83240 -10.80006 -10.55276 -10.39664 -10.00866 -9.68516 -9.57363 -9.51245 -8.81882 -8.45039 -8.24324 -7.55518 -6.24535 -4.27167 0.74326 1.37891 2.17067 2.99925 3.22924 3.25647 3.32696 3.39930 3.51038 3.90072 4.13529 4.25857 4.28805 4.30651 4.47934 4.56966 4.69794 4.82934 4.87360 5.10882 5.12938 5.15569 5.31304 5.38849 5.41441 5.51728 5.58932 5.65358 5.73530 5.76875 5.82573 5.94426 6.14243 6.17822 6.32757 6.48117 6.57160 6.67491 6.94623 7.03910 7.13147 7.27633 7.36119 7.44859 8.20781 8.54578 8.73997 9.01446 9.35303 10.87301 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.002646 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.530191 B =10577.809554 C =11378.485538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.237 3.763 10 N -0.715 5.715 11 C 0.692 3.308 12 O -0.587 6.587 13 N -0.693 5.693 14 C 0.152 3.848 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.107 3.893 18 C -0.118 4.118 19 C -0.071 4.071 20 C -0.078 4.078 21 C -0.180 4.180 22 C 0.124 3.876 23 C -0.156 4.156 24 C -0.137 4.137 25 C -0.116 4.116 26 O -0.298 6.298 27 H 0.268 0.732 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.395 0.605 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.771 -11.527 1.178 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.115 3.885 10 N -0.367 5.367 11 C 0.392 3.608 12 O -0.465 6.465 13 N -0.341 5.341 14 C 0.057 3.943 15 C -0.137 4.137 16 C -0.145 4.145 17 C 0.061 3.939 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.096 4.096 21 C -0.198 4.198 22 C 0.085 3.915 23 C -0.193 4.193 24 C -0.174 4.174 25 C -0.154 4.154 26 O -0.213 6.213 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.228 0.772 31 H 0.240 0.760 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 25.298 -10.647 1.183 27.473 hybrid contribution -0.551 0.423 -0.016 0.695 sum 24.747 -10.224 1.167 26.801 Atomic orbital electron populations 1.69878 1.06207 1.27485 1.49294 1.24780 0.94798 0.99169 0.93834 0.86812 0.80571 0.83189 0.79097 1.19814 1.20880 1.18452 1.21066 0.88413 0.95266 1.53496 0.90217 1.19423 0.95002 0.77217 0.96853 1.45446 1.03386 1.11463 1.76386 1.16126 0.83884 0.82306 0.78436 1.90884 1.55027 1.42787 1.57781 1.42755 1.05688 1.07778 1.77918 1.17377 0.83297 0.96371 0.97301 1.20764 0.94380 0.98649 0.99857 1.20184 0.92464 1.01471 1.00381 1.18886 0.83340 0.95429 0.96196 1.18960 0.93976 0.97658 1.01358 1.21155 0.91556 0.99582 0.96843 1.21906 0.92988 0.96940 0.97740 1.23401 0.96089 0.99834 1.00489 1.21874 0.89238 0.85261 0.95083 1.23589 0.96783 1.01794 0.97183 1.22686 0.97177 0.98478 0.99083 1.23075 0.91407 0.99793 1.01075 1.86135 1.14319 1.32750 1.88084 0.92206 0.95683 0.96143 0.77173 0.75955 0.84977 0.84854 0.83761 0.84809 0.84816 0.88956 0.90661 0.89624 0.90411 0.90281 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.24 5.76 4.50 -5.19 -0.02 5.73 16 10 N -0.72 -14.20 5.55 -66.42 -0.37 -14.57 16 11 C 0.69 13.27 8.30 -86.92 -0.72 12.55 16 12 O -0.59 -13.33 14.03 5.29 0.07 -13.26 16 13 N -0.69 -10.07 5.35 -14.19 -0.08 -10.15 16 14 C 0.15 2.21 6.28 -83.62 -0.53 1.68 16 15 C -0.12 -1.37 9.94 -39.31 -0.39 -1.76 16 16 C -0.13 -1.49 9.99 -39.55 -0.40 -1.89 16 17 C 0.11 1.44 6.48 -38.85 -0.25 1.19 16 18 C -0.12 -1.68 5.80 -104.88 -0.61 -2.29 16 19 C -0.07 -1.11 8.42 -39.08 -0.33 -1.44 16 20 C -0.08 -0.96 10.06 -37.34 -0.38 -1.33 16 21 C -0.18 -1.88 8.97 -36.11 -0.32 -2.21 16 22 C 0.12 1.30 1.38 -91.40 -0.13 1.17 16 23 C -0.16 -1.46 7.47 -26.06 -0.19 -1.66 16 24 C -0.14 -0.94 7.80 -25.86 -0.20 -1.14 16 25 C -0.12 -0.89 7.48 -26.08 -0.20 -1.08 16 26 O -0.30 -3.80 10.14 -19.89 -0.20 -4.00 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 30 H 0.39 6.77 8.34 -40.82 -0.34 6.43 16 31 H 0.41 4.42 8.83 -40.82 -0.36 4.06 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.14 2.52 6.41 -52.49 -0.34 2.19 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.98 350.88 -9.88 -42.86 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.60 Total: 8.13 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -5.10 Total: -5.43 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.33 Total: -50.16 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.13 Total: -17.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.98 -9.88 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889734267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.257 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds