Wall clock time and date at job start Tue Mar 31 2020 11:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00151 * 3 2 1 5 5 H 1.48491 * 109.47120 * 30.00495 * 3 2 1 6 6 H 1.48499 * 109.46795 * 150.00473 * 3 2 1 7 7 C 1.37876 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99716 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00077 * 180.02562 * 10 9 7 12 12 O 1.21582 * 119.99847 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99827 * 180.02562 * 11 10 9 14 14 C 1.40166 * 119.99833 * 185.31660 * 13 11 10 15 15 C 1.38972 * 119.92142 * 213.34775 * 14 13 11 16 16 C 1.38230 * 120.39060 * 180.24541 * 15 14 13 17 17 C 1.38332 * 119.97475 * 359.44701 * 16 15 14 18 18 C 1.40101 * 119.90326 * 0.56914 * 17 16 15 19 19 C 1.38653 * 119.91706 * 33.33183 * 14 13 11 20 20 C 1.47917 * 119.20567 * 179.71909 * 18 17 16 21 21 C 1.33313 * 118.23787 * 15.32991 * 20 18 17 22 22 C 1.50522 * 119.03543 * 0.29972 * 21 20 18 23 23 C 1.53465 * 113.36305 * 101.72576 * 22 21 20 24 24 C 1.53829 * 86.98360 * 89.21536 * 23 22 21 25 25 C 1.53420 * 113.43876 * 199.40697 * 22 21 20 26 26 O 1.36047 * 120.81302 * 180.28965 * 17 16 15 27 27 H 0.96997 * 119.99782 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46524 * 60.00220 * 9 7 2 29 29 H 1.08993 * 109.47375 * 300.00374 * 9 7 2 30 30 H 0.97002 * 120.00300 * 0.02562 * 10 9 7 31 31 H 0.97004 * 120.00073 * 5.32166 * 13 11 10 32 32 H 1.08005 * 119.80527 * 359.97438 * 15 14 13 33 33 H 1.08005 * 120.01613 * 179.74848 * 16 15 14 34 34 H 1.08001 * 120.19137 * 359.97438 * 19 14 13 35 35 H 1.07999 * 120.88042 * 195.35731 * 20 18 17 36 36 H 1.08000 * 120.48130 * 180.32242 * 21 20 18 37 37 H 1.09000 * 113.62420 * 203.73906 * 23 22 21 38 38 H 1.08996 * 113.62590 * 334.68469 * 23 22 21 39 39 H 1.09002 * 113.60265 * 270.62465 * 24 23 22 40 40 H 1.09004 * 113.60637 * 139.74954 * 24 23 22 41 41 H 1.08999 * 113.62814 * 25.37975 * 25 22 21 42 42 H 1.09003 * 113.63004 * 156.32713 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0009 12 8 6.1151 -1.8974 -0.0005 13 7 5.7742 -4.0922 -0.0013 14 6 7.1474 -4.3501 0.1112 15 6 7.7026 -5.4455 -0.5394 16 6 9.0546 -5.7118 -0.4309 17 6 9.8651 -4.8789 0.3194 18 6 9.3113 -3.7733 0.9780 19 6 7.9485 -3.5116 0.8711 20 6 10.1910 -2.8965 1.7813 21 6 11.5090 -2.9956 1.6074 22 6 12.0413 -3.9830 0.6037 23 6 12.4672 -3.3350 -0.7206 24 6 13.8574 -3.1493 -0.0889 25 6 13.5170 -4.3406 0.8230 26 8 11.1989 -5.1217 0.4329 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8746 -0.6800 -0.8910 30 1 3.3696 -3.3126 -0.0010 31 1 5.1473 -4.8283 -0.0796 32 1 7.0731 -6.0950 -1.1297 33 1 9.4790 -6.5671 -0.9358 34 1 7.5176 -2.6598 1.3764 35 1 9.7766 -2.1951 2.4902 36 1 12.1850 -2.3766 2.1786 37 1 12.4598 -4.0231 -1.5659 38 1 11.9546 -2.3967 -0.9325 39 1 13.9707 -2.2073 0.4477 40 1 14.6795 -3.3471 -0.7769 41 1 13.8495 -4.2114 1.8529 42 1 13.7995 -5.3064 0.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889734267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:47 Heat of formation + Delta-G solvation = -17.180408 kcal Electronic energy + Delta-G solvation = -25045.337894 eV Core-core repulsion = 21376.870221 eV Total energy + Delta-G solvation = -3668.467672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16966 -41.37944 -39.48118 -37.52669 -36.19774 -35.57250 -34.63529 -34.30643 -31.12162 -30.45254 -29.04558 -26.76267 -25.77254 -24.70764 -24.35261 -23.52817 -22.09787 -21.39578 -20.09924 -19.67519 -19.00802 -18.38844 -17.61396 -17.49243 -16.68422 -16.58152 -16.39151 -15.90484 -15.82664 -15.48212 -15.35836 -15.03514 -14.72207 -14.43331 -14.37397 -14.15094 -13.73409 -13.54980 -13.31129 -13.19512 -13.04754 -12.72629 -12.65770 -12.23639 -11.94360 -11.89382 -11.71894 -11.65797 -11.45340 -11.34357 -11.15123 -10.92560 -10.61861 -10.00457 -9.43684 -8.62013 -8.40523 -6.47558 -0.21363 0.29947 1.23784 1.33008 1.35080 1.47833 1.66400 2.05288 2.27879 2.36216 2.81052 2.95195 3.29963 3.41975 3.53071 3.59359 3.69209 3.75330 3.86399 4.14251 4.21035 4.30508 4.39221 4.62294 4.71935 4.74336 4.77226 4.82735 4.89861 4.96610 5.02323 5.02698 5.04724 5.16537 5.19222 5.21423 5.29732 5.39786 5.43065 5.48469 5.63223 5.84432 5.93915 6.22184 6.40591 6.54475 7.06404 7.18874 7.51975 8.74065 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.002646 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.530191 B =10577.809554 C =11378.485538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.251 3.749 10 N -0.713 5.713 11 C 0.694 3.306 12 O -0.624 6.624 13 N -0.672 5.672 14 C 0.129 3.871 15 C -0.102 4.102 16 C -0.122 4.122 17 C 0.097 3.903 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.159 4.159 22 C 0.100 3.900 23 C -0.161 4.161 24 C -0.124 4.124 25 C -0.107 4.107 26 O -0.306 6.306 27 H 0.273 0.727 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.408 0.592 31 H 0.424 0.576 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.449 -12.563 0.711 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.127 3.873 10 N -0.367 5.367 11 C 0.394 3.606 12 O -0.505 6.505 13 N -0.322 5.322 14 C 0.035 3.965 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.051 3.949 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.177 4.177 22 C 0.062 3.938 23 C -0.199 4.199 24 C -0.161 4.161 25 C -0.145 4.145 26 O -0.221 6.221 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.244 0.756 31 H 0.263 0.737 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 27.985 -11.754 0.716 30.362 hybrid contribution -1.269 0.637 0.132 1.425 sum 26.717 -11.118 0.847 28.950 Atomic orbital electron populations 1.69976 1.07646 1.28633 1.50626 1.25567 0.95534 1.02603 0.93601 0.85869 0.79265 0.79378 0.79455 1.19015 1.19826 1.18451 1.21256 0.89767 0.94668 1.52688 0.92074 1.18999 0.93145 0.79410 0.95754 1.45113 1.04193 1.10334 1.77015 1.16170 0.83057 0.83369 0.77957 1.90863 1.55805 1.44546 1.59282 1.42408 1.06396 1.06571 1.76785 1.17604 0.82857 0.97568 0.98516 1.21061 0.94758 0.97558 0.98814 1.20578 0.92290 1.01684 0.99550 1.19162 0.84096 0.95339 0.96276 1.19158 0.93687 0.98465 1.01727 1.21026 0.92658 0.99633 0.98328 1.22036 0.93825 0.98238 0.99164 1.23795 0.95740 0.98856 0.99322 1.22388 0.90346 0.85244 0.95836 1.23618 0.98533 1.00936 0.96782 1.22693 0.95933 0.98662 0.98794 1.23106 0.88674 1.00416 1.02256 1.86133 1.13928 1.33920 1.88086 0.91813 0.96916 0.97054 0.75613 0.73710 0.81523 0.82016 0.86632 0.84538 0.82002 0.88984 0.92199 0.88581 0.88708 0.88820 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 2 C 0.03 1.54 5.47 84.65 0.46 2.01 16 3 Si 0.94 43.98 27.47 68.60 1.88 45.86 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 7 C -0.55 -29.90 9.83 25.60 0.25 -29.65 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 C 0.25 12.30 4.50 85.64 0.38 12.68 16 10 N -0.71 -28.49 5.55 -482.31 -2.68 -31.17 16 11 C 0.69 26.86 8.30 179.05 1.49 28.34 16 12 O -0.62 -29.17 14.03 -3.97 -0.06 -29.23 16 13 N -0.67 -19.16 5.35 -317.09 -1.70 -20.85 16 14 C 0.13 3.71 6.28 38.08 0.24 3.95 16 15 C -0.10 -2.19 9.94 22.44 0.22 -1.96 16 16 C -0.12 -2.64 9.99 22.29 0.22 -2.42 16 17 C 0.10 2.52 6.48 22.74 0.15 2.67 16 18 C -0.13 -3.75 5.80 -20.03 -0.12 -3.87 16 19 C -0.10 -3.12 8.42 22.60 0.19 -2.93 16 20 C -0.11 -2.87 10.06 23.72 0.24 -2.63 16 21 C -0.16 -3.14 8.97 24.52 0.22 -2.92 16 22 C 0.10 1.92 1.38 -11.30 -0.02 1.90 16 23 C -0.16 -2.77 7.47 31.03 0.23 -2.54 16 24 C -0.12 -1.32 7.80 31.16 0.24 -1.08 16 25 C -0.11 -1.32 7.48 31.02 0.23 -1.09 16 26 O -0.31 -7.36 10.14 -94.08 -0.95 -8.31 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 29 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 30 H 0.41 13.93 8.34 -92.71 -0.77 13.16 16 31 H 0.42 8.61 8.83 -92.71 -0.82 7.79 16 32 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.12 4.37 6.41 -2.91 -0.02 4.35 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.80 350.88 0.86 -71.94 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.59 Total: 26.26 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.64 Total: 0.46 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.08 Total: -106.99 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.01 Total: -37.54 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -72.80 0.86 -71.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889734267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.764 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds