Wall clock time and date at job start Tue Mar 31 2020 11:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47169 * 270.00119 * 3 2 1 5 5 H 1.48506 * 109.47015 * 30.00136 * 3 2 1 6 6 H 1.48501 * 109.47386 * 149.99708 * 3 2 1 7 7 C 1.37872 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84999 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53633 * 128.63158 * 8 7 2 10 10 C 1.52953 * 109.40638 * 54.62480 * 9 8 7 11 11 H 1.09007 * 109.41542 * 56.43939 * 10 9 8 12 12 C 1.53005 * 109.41739 * 176.29424 * 10 9 8 13 13 O 1.45194 * 109.47644 * 185.00118 * 12 10 9 14 14 C 1.34782 * 117.00022 * 180.02562 * 13 12 10 15 15 O 1.21531 * 120.00472 * 0.02562 * 14 13 12 16 16 C 1.47234 * 119.99579 * 179.97438 * 14 13 12 17 17 C 1.39322 * 120.84740 * 359.72308 * 16 14 13 18 18 N 1.31891 * 120.96186 * 179.83346 * 17 16 14 19 19 C 1.31924 * 122.72751 * 0.40006 * 18 17 16 20 20 C 1.38692 * 120.81309 * 359.83629 * 19 18 17 21 21 N 1.37751 * 134.30212 * 179.97438 * 20 19 18 22 22 H 0.96995 * 125.56413 * 359.96384 * 21 20 19 23 23 C 1.36549 * 108.87333 * 179.97438 * 21 20 19 24 24 C 1.34660 * 109.66014 * 0.02562 * 23 21 20 25 25 C 1.40983 * 118.84094 * 359.97438 * 20 19 18 26 26 C 1.53005 * 109.98742 * 296.48452 * 10 9 8 27 27 C 1.51270 * 120.85055 * 359.97438 * 7 2 1 28 28 H 0.96999 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.62720 * 248.33956 * 8 7 2 30 30 H 1.08998 * 109.62860 * 8.72347 * 8 7 2 31 31 H 1.08997 * 109.48379 * 174.60978 * 9 8 7 32 32 H 1.09004 * 109.48104 * 294.63326 * 9 8 7 33 33 H 1.09001 * 109.47040 * 305.00361 * 12 10 9 34 34 H 1.08998 * 109.46699 * 65.00008 * 12 10 9 35 35 H 1.08009 * 119.51807 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.59759 * 179.81131 * 19 18 17 37 37 H 1.08003 * 125.16949 * 179.97438 * 23 21 20 38 38 H 1.08006 * 126.08755 * 179.97438 * 24 23 21 39 39 H 1.09003 * 109.33509 * 303.43769 * 26 10 9 40 40 H 1.08998 * 109.65336 * 183.38214 * 26 10 9 41 41 H 1.09002 * 109.62532 * 351.08618 * 27 7 2 42 42 H 1.09001 * 109.62715 * 111.46306 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9903 -2.1313 1.1345 10 6 3.3396 -3.5072 0.9828 11 1 3.5729 -3.9117 -0.0022 12 6 3.8822 -4.4481 2.0604 13 8 3.3562 -5.7843 1.8459 14 6 3.7397 -6.7398 2.7158 15 8 4.4928 -6.4636 3.6288 16 6 3.2454 -8.1179 2.5604 17 6 2.3762 -8.4526 1.5243 18 7 1.9346 -9.6871 1.3810 19 6 2.2742 -10.6654 2.1984 20 6 3.1309 -10.4353 3.2645 21 7 3.6571 -11.2244 4.2635 22 1 3.4854 -12.1714 4.3839 23 6 4.4598 -10.4557 5.0569 24 6 4.4685 -9.1889 4.6004 25 6 3.6362 -9.1341 3.4624 26 6 1.8215 -3.3869 1.1308 27 6 1.2677 -2.5151 -0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 3.8779 -1.6000 -0.9542 30 1 3.8981 -0.2072 0.1566 31 1 5.0744 -2.2348 1.0898 32 1 3.7057 -1.6981 2.0935 33 1 4.9706 -4.4730 2.0064 34 1 3.5753 -4.0902 3.0432 35 1 2.0619 -7.6906 0.8263 36 1 1.8799 -11.6576 2.0355 37 1 5.0042 -10.8098 5.9199 38 1 5.0152 -8.3619 5.0292 39 1 1.5878 -2.9274 2.0912 40 1 1.3688 -4.3773 1.0817 41 1 0.2036 -2.3409 0.1590 42 1 1.4171 -3.0177 -0.9562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893023093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:19 Heat of formation + Delta-G solvation = -32.579071 kcal Electronic energy + Delta-G solvation = -25224.652918 eV Core-core repulsion = 21555.517510 eV Total energy + Delta-G solvation = -3669.135409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.11343 -40.06213 -38.30921 -37.28442 -35.84222 -32.99104 -32.53105 -30.43926 -30.19728 -29.64509 -29.11593 -25.68145 -24.42554 -22.89107 -21.94620 -21.58102 -21.05046 -20.71419 -19.18958 -18.57311 -17.80449 -16.98163 -16.35944 -16.13134 -15.87207 -15.36317 -15.14069 -15.03490 -14.40463 -13.77800 -13.55337 -13.51386 -13.10252 -12.96482 -12.77359 -12.62643 -12.48939 -12.29278 -11.93108 -11.73531 -11.23611 -10.89037 -10.73398 -10.63171 -10.58632 -10.47144 -10.03836 -9.99642 -9.77412 -9.72772 -9.40805 -8.99308 -8.75651 -8.53262 -8.39845 -8.32393 -6.03938 -3.94416 0.13140 1.13063 2.29656 2.56042 2.62970 2.82734 3.30473 3.38720 3.38988 3.69590 4.15218 4.38896 4.42559 4.42804 4.54608 4.83715 4.92012 5.03792 5.19181 5.41806 5.44336 5.47624 5.53592 5.73380 5.86094 6.01872 6.09267 6.14495 6.24511 6.35811 6.50398 6.59096 6.65525 6.77695 6.87380 6.95805 6.97753 7.11430 7.14834 7.28490 7.46453 7.67339 7.71978 7.83649 7.92581 7.93927 8.47114 9.04314 9.60511 11.05721 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002644 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.756289 B =10586.570810 C =11189.042611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.485 4.485 8 C -0.020 4.020 9 C -0.099 4.099 10 C -0.073 4.073 11 H 0.070 0.930 12 C 0.074 3.926 13 O -0.345 6.345 14 C 0.512 3.488 15 O -0.508 6.508 16 C -0.137 4.137 17 C 0.132 3.868 18 N -0.477 5.477 19 C 0.148 3.852 20 C 0.012 3.988 21 N -0.576 5.576 22 H 0.423 0.577 23 C 0.072 3.928 24 C -0.198 4.198 25 C -0.018 4.018 26 C -0.103 4.103 27 C 0.009 3.991 28 H 0.263 0.737 29 H 0.017 0.983 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.055 0.945 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -23.231 8.924 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.504 4.504 8 C -0.057 4.057 9 C -0.137 4.137 10 C -0.091 4.091 11 H 0.089 0.911 12 C 0.001 3.999 13 O -0.261 6.261 14 C 0.356 3.644 15 O -0.397 6.397 16 C -0.141 4.141 17 C -0.020 4.020 18 N -0.185 5.185 19 C -0.018 4.018 20 C -0.097 4.097 21 N -0.179 5.179 22 H 0.261 0.739 23 C -0.058 4.058 24 C -0.222 4.222 25 C -0.029 4.029 26 C -0.140 4.140 27 C -0.028 4.028 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.177 0.823 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 7.382 -23.215 8.484 25.796 hybrid contribution 1.045 0.760 0.997 1.632 sum 8.428 -22.455 9.481 25.791 Atomic orbital electron populations 1.69840 1.06130 1.26778 1.50199 1.24855 0.94712 0.98500 0.94764 0.86706 0.80002 0.83471 0.78438 1.20481 1.21723 1.18965 1.20075 0.89346 0.91598 1.49408 1.19806 0.96864 0.95397 0.93658 1.21530 0.96372 0.94462 1.01327 1.21125 0.97969 0.93428 0.96610 0.91114 1.23487 0.97874 0.77314 1.01204 1.86563 1.67321 1.20280 1.51943 1.20705 0.78276 0.85618 0.79813 1.90788 1.34060 1.82679 1.32209 1.19600 1.04040 0.90894 0.99519 1.23054 0.91003 0.93294 0.94610 1.67731 1.23739 1.00494 1.26558 1.22067 0.92475 0.99076 0.88143 1.19294 1.03243 0.91607 0.95573 1.41757 1.40833 1.11287 1.24050 0.73935 1.22233 0.95689 0.91095 0.96803 1.20909 1.05474 0.97419 0.98417 1.18151 0.97626 0.91313 0.95851 1.21640 0.92698 0.98413 1.01298 1.19369 0.98548 0.92825 0.92088 0.92689 0.96424 0.94676 0.94741 0.92750 0.91882 0.91415 0.80685 0.82390 0.80296 0.82272 0.93452 0.94374 0.92610 0.97817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.73 55.43 0.71 -25.29 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 21.19 27.53 -169.99 -4.68 16.51 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.08 6.11 56.52 0.35 -5.74 16 7 C -0.49 -12.87 5.52 -98.92 -0.55 -13.42 16 8 C -0.02 -0.46 5.59 -27.48 -0.15 -0.61 16 9 C -0.10 -1.99 5.22 -26.64 -0.14 -2.13 16 10 C -0.07 -1.40 2.32 -90.64 -0.21 -1.61 16 11 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.07 1.28 4.85 37.16 0.18 1.46 16 13 O -0.34 -5.78 8.96 -40.72 -0.36 -6.14 16 14 C 0.51 8.27 7.90 34.39 0.27 8.54 16 15 O -0.51 -8.95 15.02 -19.29 -0.29 -9.24 16 16 C -0.14 -1.92 5.91 -104.64 -0.62 -2.54 16 17 C 0.13 1.72 10.78 -17.12 -0.18 1.54 16 18 N -0.48 -5.78 10.30 -12.83 -0.13 -5.91 16 19 C 0.15 1.38 11.21 -17.34 -0.19 1.19 16 20 C 0.01 0.12 7.31 -84.00 -0.61 -0.50 16 21 N -0.58 -3.46 6.13 -10.63 -0.07 -3.52 16 22 H 0.42 0.91 8.96 -40.82 -0.37 0.54 16 23 C 0.07 0.48 11.84 -16.72 -0.20 0.28 16 24 C -0.20 -2.11 10.09 -39.76 -0.40 -2.51 16 25 C -0.02 -0.23 6.04 -106.58 -0.64 -0.87 16 26 C -0.10 -2.21 5.16 -26.63 -0.14 -2.35 16 27 C 0.01 0.23 5.96 -27.51 -0.16 0.06 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.81 4.59 -51.93 -0.24 0.57 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.18 2.18 7.62 -52.48 -0.40 1.78 16 36 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.18 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.16 1.82 7.19 -52.48 -0.38 1.45 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.76 7.72 -51.93 -0.40 0.36 16 41 H 0.06 1.55 7.07 -51.93 -0.37 1.18 16 42 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -32.69 344.86 -9.05 -41.74 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.57 Total: -1.80 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.85 Total: -11.54 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.51 Total: -34.72 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.65 Total: -15.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.68 Total: 16.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.69 -9.05 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893023093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.160 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds