Wall clock time and date at job start Tue Mar 31 2020 11:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47169 * 270.00119 * 3 2 1 5 5 H 1.48506 * 109.47015 * 30.00136 * 3 2 1 6 6 H 1.48501 * 109.47386 * 149.99708 * 3 2 1 7 7 C 1.37872 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84999 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53633 * 128.63158 * 8 7 2 10 10 C 1.52953 * 109.40638 * 54.62480 * 9 8 7 11 11 H 1.09007 * 109.41542 * 56.43939 * 10 9 8 12 12 C 1.53005 * 109.41739 * 176.29424 * 10 9 8 13 13 O 1.45194 * 109.47644 * 185.00118 * 12 10 9 14 14 C 1.34782 * 117.00022 * 180.02562 * 13 12 10 15 15 O 1.21531 * 120.00472 * 0.02562 * 14 13 12 16 16 C 1.47234 * 119.99579 * 179.97438 * 14 13 12 17 17 C 1.39322 * 120.84740 * 359.72308 * 16 14 13 18 18 N 1.31891 * 120.96186 * 179.83346 * 17 16 14 19 19 C 1.31924 * 122.72751 * 0.40006 * 18 17 16 20 20 C 1.38692 * 120.81309 * 359.83629 * 19 18 17 21 21 N 1.37751 * 134.30212 * 179.97438 * 20 19 18 22 22 H 0.96995 * 125.56413 * 359.96384 * 21 20 19 23 23 C 1.36549 * 108.87333 * 179.97438 * 21 20 19 24 24 C 1.34660 * 109.66014 * 0.02562 * 23 21 20 25 25 C 1.40983 * 118.84094 * 359.97438 * 20 19 18 26 26 C 1.53005 * 109.98742 * 296.48452 * 10 9 8 27 27 C 1.51270 * 120.85055 * 359.97438 * 7 2 1 28 28 H 0.96999 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.62720 * 248.33956 * 8 7 2 30 30 H 1.08998 * 109.62860 * 8.72347 * 8 7 2 31 31 H 1.08997 * 109.48379 * 174.60978 * 9 8 7 32 32 H 1.09004 * 109.48104 * 294.63326 * 9 8 7 33 33 H 1.09001 * 109.47040 * 305.00361 * 12 10 9 34 34 H 1.08998 * 109.46699 * 65.00008 * 12 10 9 35 35 H 1.08009 * 119.51807 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.59759 * 179.81131 * 19 18 17 37 37 H 1.08003 * 125.16949 * 179.97438 * 23 21 20 38 38 H 1.08006 * 126.08755 * 179.97438 * 24 23 21 39 39 H 1.09003 * 109.33509 * 303.43769 * 26 10 9 40 40 H 1.08998 * 109.65336 * 183.38214 * 26 10 9 41 41 H 1.09002 * 109.62532 * 351.08618 * 27 7 2 42 42 H 1.09001 * 109.62715 * 111.46306 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9903 -2.1313 1.1345 10 6 3.3396 -3.5072 0.9828 11 1 3.5729 -3.9117 -0.0022 12 6 3.8822 -4.4481 2.0604 13 8 3.3562 -5.7843 1.8459 14 6 3.7397 -6.7398 2.7158 15 8 4.4928 -6.4636 3.6288 16 6 3.2454 -8.1179 2.5604 17 6 2.3762 -8.4526 1.5243 18 7 1.9346 -9.6871 1.3810 19 6 2.2742 -10.6654 2.1984 20 6 3.1309 -10.4353 3.2645 21 7 3.6571 -11.2244 4.2635 22 1 3.4854 -12.1714 4.3839 23 6 4.4598 -10.4557 5.0569 24 6 4.4685 -9.1889 4.6004 25 6 3.6362 -9.1341 3.4624 26 6 1.8215 -3.3869 1.1308 27 6 1.2677 -2.5151 -0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 3.8779 -1.6000 -0.9542 30 1 3.8981 -0.2072 0.1566 31 1 5.0744 -2.2348 1.0898 32 1 3.7057 -1.6981 2.0935 33 1 4.9706 -4.4730 2.0064 34 1 3.5753 -4.0902 3.0432 35 1 2.0619 -7.6906 0.8263 36 1 1.8799 -11.6576 2.0355 37 1 5.0042 -10.8098 5.9199 38 1 5.0152 -8.3619 5.0292 39 1 1.5878 -2.9274 2.0912 40 1 1.3688 -4.3773 1.0817 41 1 0.2036 -2.3409 0.1590 42 1 1.4171 -3.0177 -0.9562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893023093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:18 Heat of formation + Delta-G solvation = -52.198679 kcal Electronic energy + Delta-G solvation = -25225.503688 eV Core-core repulsion = 21555.517510 eV Total energy + Delta-G solvation = -3669.986179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85634 -41.29128 -39.17553 -38.86172 -37.27270 -34.52941 -33.77610 -31.62287 -31.27711 -31.02853 -30.65658 -27.08273 -25.60274 -23.69916 -23.44666 -23.19343 -22.38349 -21.71053 -20.86294 -19.43361 -18.88471 -18.09362 -17.82121 -17.36928 -17.27662 -16.37602 -16.17583 -15.93581 -15.72549 -15.34720 -15.08385 -14.74929 -14.40504 -14.27227 -14.17007 -13.84277 -13.73035 -13.49516 -13.35212 -13.08785 -12.98823 -12.70080 -12.49132 -12.32327 -11.88623 -11.81257 -11.61879 -11.40025 -11.31296 -11.27257 -10.73172 -10.65864 -10.50453 -10.40229 -9.70087 -9.09104 -8.13384 -6.07659 -0.73069 0.32436 1.37873 1.40815 1.42460 1.51189 1.60209 1.74396 2.02983 2.43235 2.79683 3.12421 3.33149 3.58306 3.72431 3.82743 3.91385 3.98983 4.05135 4.07453 4.19222 4.39962 4.50087 4.54298 4.69284 4.71436 4.75535 4.80032 5.05098 5.07840 5.12013 5.17796 5.29294 5.32373 5.35188 5.37119 5.50148 5.54757 5.63386 5.69152 5.76146 5.81940 5.91419 6.40681 6.54657 6.66838 6.86762 6.99818 7.49977 8.97912 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002644 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.756289 B =10586.570810 C =11189.042611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.015 3.985 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.497 4.497 8 C -0.023 4.023 9 C -0.096 4.096 10 C -0.065 4.065 11 H 0.072 0.928 12 C 0.082 3.918 13 O -0.352 6.352 14 C 0.512 3.488 15 O -0.530 6.530 16 C -0.171 4.171 17 C 0.131 3.869 18 N -0.504 5.504 19 C 0.166 3.834 20 C 0.005 3.995 21 N -0.550 5.550 22 H 0.446 0.554 23 C 0.119 3.881 24 C -0.248 4.248 25 C -0.043 4.043 26 C -0.093 4.093 27 C 0.006 3.994 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.230 0.770 38 H 0.141 0.859 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.020 0.980 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -26.177 10.253 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.169 1.169 7 C -0.516 4.516 8 C -0.061 4.061 9 C -0.134 4.134 10 C -0.083 4.083 11 H 0.091 0.909 12 C 0.008 3.992 13 O -0.268 6.268 14 C 0.358 3.642 15 O -0.422 6.422 16 C -0.175 4.175 17 C -0.020 4.020 18 N -0.213 5.213 19 C 0.002 3.998 20 C -0.105 4.105 21 N -0.154 5.154 22 H 0.289 0.711 23 C -0.014 4.014 24 C -0.273 4.273 25 C -0.054 4.054 26 C -0.130 4.130 27 C -0.032 4.032 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.186 0.814 36 H 0.219 0.781 37 H 0.246 0.754 38 H 0.159 0.841 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 9.509 -26.211 9.806 29.557 hybrid contribution 0.365 1.434 0.635 1.610 sum 9.874 -24.777 10.441 28.643 Atomic orbital electron populations 1.69997 1.07837 1.27336 1.52537 1.25692 0.95395 1.02048 0.95087 0.85786 0.79447 0.79315 0.78637 1.20038 1.22184 1.16896 1.20727 0.91553 0.91727 1.47624 1.19843 0.94427 0.96554 0.95257 1.21454 0.98463 0.93841 0.99621 1.20967 0.95819 0.93960 0.97559 0.90912 1.23259 0.98574 0.77399 0.99922 1.86556 1.67602 1.20221 1.52444 1.21142 0.77775 0.86165 0.79136 1.90759 1.35300 1.83064 1.33049 1.19554 1.06320 0.90107 1.01546 1.22986 0.90783 0.93956 0.94242 1.67783 1.24943 1.00524 1.28015 1.22742 0.90600 0.99909 0.86596 1.19311 1.03584 0.91041 0.96595 1.41805 1.39135 1.12200 1.22294 0.71120 1.22869 0.92971 0.89330 0.96216 1.20949 1.07560 0.99205 0.99549 1.18501 0.98384 0.92269 0.96281 1.21470 0.94818 0.97874 0.98878 1.19340 0.96770 0.93781 0.93270 0.92981 0.95727 0.94313 0.91309 0.93273 0.90301 0.91800 0.81359 0.78107 0.75383 0.84086 0.94732 0.93371 0.96122 0.98252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 12.73 21.44 0.27 -56.52 16 2 C 0.02 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.94 43.77 27.53 68.60 1.89 45.66 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.24 -10.49 6.11 99.48 0.61 -9.89 16 7 C -0.50 -26.72 5.52 -16.17 -0.09 -26.81 16 8 C -0.02 -1.06 5.59 30.11 0.17 -0.89 16 9 C -0.10 -3.70 5.22 30.66 0.16 -3.54 16 10 C -0.06 -2.45 2.32 -10.81 -0.03 -2.47 16 11 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 12 C 0.08 2.76 4.85 71.98 0.35 3.11 16 13 O -0.35 -12.00 8.96 -56.94 -0.51 -12.51 16 14 C 0.51 17.08 7.90 70.19 0.55 17.63 16 15 O -0.53 -19.27 15.02 19.73 0.30 -18.97 16 16 C -0.17 -4.95 5.91 -19.88 -0.12 -5.06 16 17 C 0.13 3.52 10.78 84.95 0.92 4.43 16 18 N -0.50 -11.78 10.30 -194.51 -2.00 -13.79 16 19 C 0.17 2.67 11.21 84.79 0.95 3.62 16 20 C 0.01 0.08 7.31 38.99 0.29 0.37 16 21 N -0.55 -4.18 6.13 -187.55 -1.15 -5.33 16 22 H 0.45 -0.55 8.96 -92.71 -0.83 -1.38 16 23 C 0.12 1.09 11.84 83.14 0.98 2.07 16 24 C -0.25 -5.04 10.09 22.15 0.22 -4.82 16 25 C -0.04 -1.05 6.04 -21.13 -0.13 -1.18 16 26 C -0.09 -4.08 5.16 30.66 0.16 -3.92 16 27 C 0.01 0.31 5.96 30.09 0.18 0.49 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.70 4.59 -2.39 -0.01 1.69 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.17 4.47 7.62 -2.91 -0.02 4.44 16 36 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.23 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.14 3.32 7.19 -2.91 -0.02 3.30 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.99 7.72 -2.39 -0.02 1.97 16 41 H 0.02 1.19 7.07 -2.39 -0.02 1.17 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: -1.00 -75.30 344.86 3.95 -71.35 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.13 Total: 5.77 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.03 Total: -15.65 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.88 Total: -75.65 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.21 Total: -31.48 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.89 Total: 45.66 kcal Total: -75.30 3.95 -71.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893023093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.152 kcal (2) G-P(sol) polarization free energy of solvation -75.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds