Wall clock time and date at job start Tue Mar 31 2020 11:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48495 * 109.47217 * 269.99604 * 3 2 1 5 5 H 1.48500 * 109.47124 * 30.00193 * 3 2 1 6 6 H 1.48501 * 109.46791 * 149.99549 * 3 2 1 7 7 C 1.37876 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99884 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47072 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47265 * 180.02562 * 10 9 7 12 12 C 1.34780 * 120.00765 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99328 * 5.05246 * 12 11 10 14 14 N 1.34769 * 120.00838 * 185.05025 * 12 11 10 15 15 O 1.41601 * 119.99528 * 355.04403 * 14 12 11 16 16 C 1.46500 * 120.00335 * 175.04234 * 14 12 11 17 17 C 1.50698 * 109.46800 * 75.00084 * 16 14 12 18 18 C 1.36126 * 120.17498 * 259.72383 * 17 16 14 19 19 C 1.39335 * 120.99447 * 180.33018 * 18 17 16 20 20 C 1.36129 * 120.98721 * 359.92148 * 19 18 17 21 21 C 1.40501 * 119.65017 * 0.05121 * 20 19 18 22 22 C 1.40547 * 121.28050 * 180.02562 * 21 20 19 23 23 C 1.36087 * 119.65309 * 179.97438 * 22 21 20 24 24 C 1.39378 * 120.99061 * 0.02562 * 23 22 21 25 25 C 1.36090 * 120.99987 * 359.95004 * 24 23 22 26 26 C 1.40507 * 120.17236 * 80.00369 * 17 16 14 27 27 H 0.97007 * 120.00492 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47321 * 60.00381 * 9 7 2 29 29 H 1.08997 * 109.47213 * 300.00537 * 9 7 2 30 30 H 1.08995 * 109.47460 * 59.99987 * 10 9 7 31 31 H 1.08997 * 109.47326 * 300.00205 * 10 9 7 32 32 H 0.97006 * 120.00116 * 0.02562 * 11 10 9 33 33 H 0.96694 * 114.00876 * 5.04107 * 15 14 12 34 34 H 1.08995 * 109.47011 * 315.00051 * 16 14 12 35 35 H 1.08997 * 109.46966 * 195.00070 * 16 14 12 36 36 H 1.07999 * 119.50192 * 0.27310 * 18 17 16 37 37 H 1.08001 * 119.50878 * 179.97438 * 19 18 17 38 38 H 1.07994 * 120.17665 * 180.02562 * 20 19 18 39 39 H 1.08003 * 120.17266 * 359.95290 * 22 21 20 40 40 H 1.07998 * 119.50148 * 179.97438 * 23 22 21 41 41 H 1.08011 * 119.50016 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.17088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0010 11 7 5.4864 -2.6365 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5561 -4.8546 -0.0903 14 7 7.5041 -3.8059 0.1066 15 8 8.2160 -2.5819 0.1093 16 6 8.2282 -5.0747 0.2167 17 6 8.2636 -5.7513 -1.1294 18 6 7.3964 -6.7623 -1.4100 19 6 7.4187 -7.4043 -2.6465 20 6 8.3073 -7.0379 -3.6104 21 6 9.2176 -5.9981 -3.3576 22 6 10.1493 -5.5917 -4.3283 23 6 11.0156 -4.5802 -4.0482 24 6 10.9944 -3.9391 -2.8108 25 6 10.1062 -4.3052 -1.8469 26 6 9.1957 -5.3457 -2.0993 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6585 -3.1501 -0.8892 31 1 3.6578 -3.1505 0.8907 32 1 5.9715 -1.7964 0.0033 33 1 7.6503 -1.7977 0.1101 34 1 7.7227 -5.7204 0.9347 35 1 9.2469 -4.8836 0.5542 36 1 6.6810 -7.0722 -0.6627 37 1 6.7199 -8.2039 -2.8434 38 1 8.3128 -7.5442 -4.5644 39 1 10.1778 -6.0798 -5.2913 40 1 11.7308 -4.2702 -4.7957 41 1 11.6932 -3.1394 -2.6141 42 1 10.1012 -3.7990 -0.8929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904179957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:54 Heat of formation + Delta-G solvation = 1.195843 kcal Electronic energy + Delta-G solvation = -25383.473453 eV Core-core repulsion = 21715.802634 eV Total energy + Delta-G solvation = -3667.670818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67902 -40.91859 -37.85808 -37.47185 -36.78660 -35.12575 -34.57871 -32.65555 -31.97266 -31.17760 -30.20388 -27.72958 -26.11978 -24.20346 -23.88896 -22.90918 -22.30727 -21.46991 -20.47970 -19.01441 -18.41312 -17.99989 -17.57404 -17.26099 -16.80678 -16.47702 -16.04699 -15.73311 -15.55033 -15.47366 -15.11416 -14.85909 -14.61335 -14.48731 -14.37950 -14.25168 -13.84522 -13.52936 -13.35921 -13.06911 -12.97638 -12.77757 -12.26264 -12.19624 -12.17530 -11.81270 -11.76398 -11.67907 -11.55886 -11.38885 -10.79070 -10.77928 -10.30621 -9.60048 -9.50115 -8.77913 -8.29808 -6.37245 -0.45091 0.12050 0.73264 1.28045 1.39532 1.42029 1.52935 1.93928 2.13430 2.20357 2.36943 3.05439 3.20876 3.60956 3.77882 3.94852 4.03221 4.09411 4.16015 4.31043 4.32380 4.42969 4.47750 4.50106 4.57636 4.65748 4.68219 4.73767 4.88294 5.04868 5.09557 5.16280 5.26251 5.32518 5.36158 5.38986 5.40478 5.54839 5.62906 5.64695 5.74031 5.93321 5.98886 6.13618 6.23244 6.70488 7.07301 7.27073 7.32039 8.86967 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002994 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.580735 B = 9349.846777 C = 9749.801722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.030 0.970 9 C -0.012 4.012 10 C 0.167 3.833 11 N -0.733 5.733 12 C 0.689 3.311 13 O -0.601 6.601 14 N -0.481 5.481 15 O -0.328 6.328 16 C 0.201 3.799 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.134 4.134 20 C -0.103 4.103 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.052 4.052 27 H 0.268 0.732 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.405 0.595 33 H 0.396 0.604 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.717 -8.804 -5.230 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.050 4.050 10 C 0.043 3.957 11 N -0.391 5.391 12 C 0.391 3.609 13 O -0.481 6.481 14 N -0.261 5.261 15 O -0.223 6.223 16 C 0.081 3.919 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.151 4.151 20 C -0.121 4.121 21 C -0.082 4.082 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.053 4.053 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.242 0.758 33 H 0.245 0.755 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 27.648 -9.858 -5.247 29.819 hybrid contribution -0.907 1.489 0.022 1.744 sum 26.742 -8.369 -5.225 28.504 Atomic orbital electron populations 1.70074 1.08616 1.28434 1.51975 1.26076 0.95671 1.03866 0.93691 0.85549 0.79789 0.77350 0.79247 1.19186 1.21351 1.15680 1.21232 0.91526 0.93403 1.51531 0.95205 1.19648 0.94425 0.92769 0.98127 1.20911 0.76232 0.98460 1.00061 1.45182 1.07808 1.06913 1.79234 1.16208 0.81084 0.84917 0.78706 1.90922 1.66405 1.31682 1.59041 1.48733 1.00698 0.98027 1.78668 1.89028 1.25551 1.08168 1.99563 1.20320 0.98727 0.79251 0.93555 1.20087 0.97192 0.97668 0.96945 1.21002 0.96597 0.95437 0.97653 1.21129 0.99611 1.00929 0.93475 1.21369 0.94528 0.96121 1.00089 1.18440 0.98036 0.97460 0.94254 1.21310 0.94879 0.97969 0.99001 1.21205 0.99404 0.96029 0.97527 1.21195 0.98824 1.00180 0.93525 1.21248 0.95016 0.96155 1.00812 1.18173 0.96515 0.96924 0.93642 0.92334 0.94184 0.94766 0.94024 0.93417 0.75814 0.75486 0.88487 0.86088 0.86145 0.84341 0.83207 0.83540 0.83497 0.83918 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.00 0.23 5.47 84.65 0.46 0.69 16 3 Si 0.96 41.66 27.47 68.60 1.88 43.55 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 7 C -0.54 -30.34 9.66 25.60 0.25 -30.10 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.51 4.15 29.85 0.12 -0.39 16 10 C 0.17 6.69 5.62 86.38 0.49 7.17 16 11 N -0.73 -22.67 5.51 -478.56 -2.64 -25.31 16 12 C 0.69 22.41 8.26 179.06 1.48 23.89 16 13 O -0.60 -23.78 14.66 -4.00 -0.06 -23.84 16 14 N -0.48 -12.15 3.77 -482.31 -1.82 -13.97 16 15 O -0.33 -6.32 13.92 -38.79 -0.54 -6.86 16 16 C 0.20 4.54 5.09 85.63 0.44 4.98 16 17 C -0.12 -2.98 5.14 -19.80 -0.10 -3.08 16 18 C -0.09 -2.32 8.62 22.04 0.19 -2.13 16 19 C -0.13 -3.07 9.95 22.04 0.22 -2.86 16 20 C -0.10 -2.17 9.77 22.33 0.22 -1.95 16 21 C -0.08 -1.87 5.74 -21.30 -0.12 -1.99 16 22 C -0.11 -2.03 9.77 22.33 0.22 -1.81 16 23 C -0.12 -1.96 9.95 22.04 0.22 -1.75 16 24 C -0.12 -2.04 9.95 22.04 0.22 -1.82 16 25 C -0.11 -2.37 9.29 22.33 0.21 -2.16 16 26 C -0.05 -1.27 5.74 -21.30 -0.12 -1.40 16 27 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 28 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 29 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.40 9.35 6.26 -92.70 -0.58 8.77 16 33 H 0.40 5.29 6.71 -74.06 -0.50 4.79 16 34 H 0.10 2.18 7.80 -2.39 -0.02 2.16 16 35 H 0.12 2.10 7.00 -2.39 -0.02 2.08 16 36 H 0.12 3.33 7.55 -2.91 -0.02 3.31 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.14 2.57 5.53 -2.91 -0.02 2.55 16 Total: -1.00 -75.07 350.70 1.44 -73.63 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.07 Total: 26.19 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.38 Total: -14.69 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.16 Total: -97.97 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.60 Total: -30.70 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.55 kcal Total: -75.07 1.44 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904179957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.826 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds