Wall clock time and date at job start Tue Mar 31 2020 11:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28472 * 124.88677 * 2 1 4 4 C 1.31807 * 110.07219 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.51545 * 179.97438 * 4 3 2 6 6 O 1.21573 * 119.99819 * 173.73408 * 5 4 3 7 7 N 1.34773 * 120.00247 * 353.72941 * 5 4 3 8 8 C 1.46960 * 120.59427 * 185.36157 * 7 5 4 9 9 C 1.53814 * 108.39683 * 124.75908 * 8 7 5 10 10 N 1.46964 * 108.57986 * 49.63603 * 9 8 7 11 11 C 1.36939 * 120.59235 * 124.67167 * 10 9 8 12 12 H 1.08002 * 119.99589 * 215.91972 * 11 10 9 13 13 C 1.38807 * 120.00471 * 35.91826 * 11 10 9 14 14 N 1.31622 * 119.99854 * 356.39532 * 13 11 10 15 15 Si 1.86802 * 120.00262 * 176.39465 * 13 11 10 16 16 H 1.48492 * 109.47211 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47191 * 120.00419 * 15 13 11 18 18 H 1.48507 * 109.46658 * 240.00034 * 15 13 11 19 19 C 1.46964 * 118.81404 * 304.64483 * 10 9 8 20 20 C 1.46964 * 120.59197 * 5.64146 * 7 5 4 21 21 C 1.41501 * 106.96581 * 359.97438 * 4 3 2 22 22 C 1.35034 * 124.88284 * 179.97438 * 2 1 3 23 23 C 1.50698 * 126.38722 * 0.02562 * 22 2 1 24 24 F 1.39898 * 109.47440 * 210.02494 * 23 22 2 25 25 F 1.39902 * 109.46906 * 330.02093 * 23 22 2 26 26 H 1.08997 * 109.47165 * 90.02535 * 1 2 3 27 27 H 1.08997 * 109.47660 * 210.03125 * 1 2 3 28 28 H 1.09004 * 109.47054 * 330.03103 * 1 2 3 29 29 H 1.09001 * 109.61224 * 244.53517 * 8 7 5 30 30 H 1.08995 * 109.61250 * 5.05165 * 8 7 5 31 31 H 1.09002 * 109.74372 * 289.84442 * 9 8 7 32 32 H 1.09003 * 109.53457 * 169.30243 * 9 8 7 33 33 H 0.96998 * 120.00002 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.61143 * 295.48754 * 19 10 9 35 35 H 1.08991 * 109.60973 * 174.97268 * 19 10 9 36 36 H 1.09003 * 109.60960 * 354.94420 * 20 7 5 37 37 H 1.08994 * 109.61249 * 115.45847 * 20 7 5 38 38 H 1.07998 * 127.24740 * 180.02562 * 21 4 3 39 39 H 1.08998 * 109.47740 * 90.02091 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7168 -0.0006 5 6 4.6273 1.6398 -0.0013 6 8 5.7558 1.2024 0.1132 7 7 4.4285 2.9666 -0.1289 8 6 5.5689 3.8857 -0.2491 9 6 5.3916 4.7141 -1.5328 10 7 4.0306 5.2684 -1.5482 11 6 3.8286 6.6166 -1.6779 12 1 3.0163 7.0941 -1.1500 13 6 4.6677 7.3695 -2.4876 14 7 5.6998 6.8012 -3.0745 15 14 4.3323 9.1891 -2.7446 16 1 3.1207 9.5817 -1.9813 17 1 5.4959 9.9790 -2.2679 18 1 4.1135 9.4528 -4.1896 19 6 2.8902 4.3499 -1.4224 20 6 3.0674 3.5209 -0.1442 21 6 3.5271 -0.6972 -0.0003 22 6 2.2372 -1.1077 0.0005 23 6 1.7533 -2.5349 0.0006 24 9 2.6848 -3.3432 0.6611 25 9 0.5213 -2.6095 0.6593 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3634 -0.8896 0.5143 28 1 -0.3633 0.8903 0.5134 29 1 5.5976 4.5483 0.6159 30 1 6.4951 3.3139 -0.3058 31 1 5.5370 4.0770 -2.4052 32 1 6.1178 5.5269 -1.5453 33 1 6.2864 7.3274 -3.6401 34 1 2.8575 3.6868 -2.2869 35 1 1.9646 4.9221 -1.3619 36 1 2.3413 2.7081 -0.1318 37 1 2.9221 4.1580 0.7281 38 1 4.4107 -1.3181 -0.0003 39 1 1.6373 -2.8794 -1.0270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:49 Heat of formation + Delta-G solvation = -1.179104 kcal Electronic energy + Delta-G solvation = -26602.299164 eV Core-core repulsion = 22412.588582 eV Total energy + Delta-G solvation = -4189.710582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.57565 -47.59538 -42.93623 -39.26053 -36.68830 -34.04001 -33.57908 -32.23697 -31.12437 -30.19425 -27.94957 -26.90600 -26.32052 -24.05683 -22.97784 -22.29010 -21.36892 -20.26508 -19.03881 -18.14259 -17.75315 -17.51919 -16.96705 -16.42452 -16.29250 -15.51659 -15.13371 -14.79487 -14.68647 -14.50268 -14.22890 -13.90432 -13.56243 -13.50013 -13.31303 -13.26039 -13.14612 -13.02181 -12.62268 -12.28319 -12.00362 -11.88469 -11.18595 -10.97433 -10.73816 -10.56279 -10.23533 -10.11516 -10.00257 -9.86543 -9.56914 -9.40398 -9.27343 -8.51538 -8.16468 -6.54958 -5.81552 -3.37602 1.34094 1.79268 2.04846 3.06580 3.34246 3.41732 3.43394 3.47729 3.59108 3.65271 3.96560 4.25506 4.36087 4.45331 4.75323 4.76838 5.08283 5.10172 5.24750 5.36033 5.42030 5.54724 5.89212 5.94990 6.01832 6.14772 6.23547 6.40743 6.42352 6.53800 6.70533 6.84161 7.03201 7.35728 7.63094 7.73607 7.74629 7.98153 8.47681 8.56537 9.18906 9.77047 10.37904 11.23273 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.003155 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.940962 B = 8872.082963 C = 9588.955602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.266 5.266 3 N -0.234 5.234 4 C 0.002 3.998 5 C 0.590 3.410 6 O -0.547 6.547 7 N -0.578 5.578 8 C 0.084 3.916 9 C 0.155 3.845 10 N -0.594 5.594 11 C -0.256 4.256 12 H 0.065 0.935 13 C 0.009 3.991 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.288 1.288 19 C 0.136 3.864 20 C 0.057 3.943 21 C -0.131 4.131 22 C -0.082 4.082 23 C 0.355 3.645 24 F -0.184 7.184 25 F -0.198 7.198 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.171 0.829 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 -17.966 5.596 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.054 5.054 3 N -0.070 5.070 4 C -0.157 4.157 5 C 0.376 3.624 6 O -0.425 6.425 7 N -0.309 5.309 8 C -0.039 4.039 9 C 0.029 3.971 10 N -0.317 5.317 11 C -0.386 4.386 12 H 0.083 0.917 13 C -0.189 4.189 14 N -0.547 5.547 15 Si 0.734 3.266 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.215 1.215 19 C 0.008 3.992 20 C -0.068 4.068 21 C -0.160 4.160 22 C -0.207 4.207 23 C 0.300 3.700 24 F -0.165 7.165 25 F -0.179 7.179 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.188 0.812 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.723 -17.180 5.568 21.531 hybrid contribution 0.208 0.376 -0.132 0.449 sum -11.516 -16.804 5.436 21.084 Atomic orbital electron populations 1.22630 0.72733 1.06954 1.05204 1.45587 1.07983 1.01936 1.49860 1.73469 1.03359 1.11301 1.18855 1.22186 0.90789 0.93870 1.08817 1.16958 0.86153 0.81592 0.77743 1.90751 1.22737 1.76788 1.52176 1.47950 1.09238 1.04971 1.68746 1.22773 0.87771 0.91521 1.01829 1.21473 0.89000 0.96227 0.90378 1.43973 0.99745 1.02607 1.85423 1.19210 1.14620 0.83121 1.21634 0.91706 1.25360 0.98193 0.98785 0.96593 1.69862 1.15912 1.35217 1.33730 0.86182 0.77815 0.84844 0.77716 1.20210 1.21579 1.21494 1.21264 0.92297 0.92219 0.93371 1.23293 0.83208 1.00069 1.00274 1.21521 0.95928 0.93911 1.04595 1.21696 0.92725 0.90566 1.15735 1.19626 0.72509 0.84482 0.93418 1.93060 1.65979 1.73745 1.83692 1.92911 1.44278 1.96496 1.84206 0.89230 0.87143 0.87947 0.92045 0.90138 0.96132 0.86966 0.93394 0.96222 0.91805 0.85806 0.92224 0.81192 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 11.03 59.84 0.66 1.07 16 2 N -0.27 -2.91 3.70 -63.86 -0.24 -3.15 16 3 N -0.23 -3.36 8.31 33.42 0.28 -3.08 16 4 C 0.00 0.03 6.90 -82.77 -0.57 -0.54 16 5 C 0.59 11.54 7.69 -12.39 -0.10 11.44 16 6 O -0.55 -11.86 16.36 5.30 0.09 -11.77 16 7 N -0.58 -11.59 2.94 -173.38 -0.51 -12.10 16 8 C 0.08 1.79 6.61 -3.37 -0.02 1.77 16 9 C 0.16 3.83 5.48 -3.37 -0.02 3.81 16 10 N -0.59 -14.99 2.97 -171.76 -0.51 -15.50 16 11 C -0.26 -6.93 9.55 -15.06 -0.14 -7.08 16 12 H 0.07 1.72 7.83 -52.49 -0.41 1.30 16 13 C 0.01 0.26 5.31 -17.43 -0.09 0.17 16 14 N -0.90 -25.82 10.64 55.49 0.59 -25.23 16 15 Si 0.90 21.32 29.56 -169.99 -5.02 16.30 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.14 2.87 6.67 -3.59 -0.02 2.85 16 20 C 0.06 1.05 6.49 -3.60 -0.02 1.03 16 21 C -0.13 -1.75 10.42 -39.36 -0.41 -2.16 16 22 C -0.08 -0.87 6.66 -82.21 -0.55 -1.42 16 23 C 0.35 2.54 5.72 36.00 0.21 2.75 16 24 F -0.18 -1.66 17.06 2.25 0.04 -1.63 16 25 F -0.20 -1.43 14.49 2.25 0.03 -1.40 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.11 0.54 5.44 -51.93 -0.28 0.26 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.69 7.02 -51.93 -0.36 1.32 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 3.03 5.88 -51.93 -0.31 2.72 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 36 H 0.13 2.06 3.67 -120.21 -0.44 1.61 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -33.34 327.02 -6.14 -39.48 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.73 Total: -0.55 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.08 Total: 13.68 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.39 Total: -59.05 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.34 -6.14 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.305 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds