Wall clock time and date at job start Tue Mar 31 2020 11:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28472 * 124.88677 * 2 1 4 4 C 1.31807 * 110.07219 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.51545 * 179.97438 * 4 3 2 6 6 O 1.21573 * 119.99819 * 173.73408 * 5 4 3 7 7 N 1.34773 * 120.00247 * 353.72941 * 5 4 3 8 8 C 1.46960 * 120.59427 * 185.36157 * 7 5 4 9 9 C 1.53814 * 108.39683 * 124.75908 * 8 7 5 10 10 N 1.46964 * 108.57986 * 49.63603 * 9 8 7 11 11 C 1.36939 * 120.59235 * 124.67167 * 10 9 8 12 12 H 1.08002 * 119.99589 * 215.91972 * 11 10 9 13 13 C 1.38807 * 120.00471 * 35.91826 * 11 10 9 14 14 N 1.31622 * 119.99854 * 356.39532 * 13 11 10 15 15 Si 1.86802 * 120.00262 * 176.39465 * 13 11 10 16 16 H 1.48492 * 109.47211 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47191 * 120.00419 * 15 13 11 18 18 H 1.48507 * 109.46658 * 240.00034 * 15 13 11 19 19 C 1.46964 * 118.81404 * 304.64483 * 10 9 8 20 20 C 1.46964 * 120.59197 * 5.64146 * 7 5 4 21 21 C 1.41501 * 106.96581 * 359.97438 * 4 3 2 22 22 C 1.35034 * 124.88284 * 179.97438 * 2 1 3 23 23 C 1.50698 * 126.38722 * 0.02562 * 22 2 1 24 24 F 1.39898 * 109.47440 * 210.02494 * 23 22 2 25 25 F 1.39902 * 109.46906 * 330.02093 * 23 22 2 26 26 H 1.08997 * 109.47165 * 90.02535 * 1 2 3 27 27 H 1.08997 * 109.47660 * 210.03125 * 1 2 3 28 28 H 1.09004 * 109.47054 * 330.03103 * 1 2 3 29 29 H 1.09001 * 109.61224 * 244.53517 * 8 7 5 30 30 H 1.08995 * 109.61250 * 5.05165 * 8 7 5 31 31 H 1.09002 * 109.74372 * 289.84442 * 9 8 7 32 32 H 1.09003 * 109.53457 * 169.30243 * 9 8 7 33 33 H 0.96998 * 120.00002 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.61143 * 295.48754 * 19 10 9 35 35 H 1.08991 * 109.60973 * 174.97268 * 19 10 9 36 36 H 1.09003 * 109.60960 * 354.94420 * 20 7 5 37 37 H 1.08994 * 109.61249 * 115.45847 * 20 7 5 38 38 H 1.07998 * 127.24740 * 180.02562 * 21 4 3 39 39 H 1.08998 * 109.47740 * 90.02091 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7168 -0.0006 5 6 4.6273 1.6398 -0.0013 6 8 5.7558 1.2024 0.1132 7 7 4.4285 2.9666 -0.1289 8 6 5.5689 3.8857 -0.2491 9 6 5.3916 4.7141 -1.5328 10 7 4.0306 5.2684 -1.5482 11 6 3.8286 6.6166 -1.6779 12 1 3.0163 7.0941 -1.1500 13 6 4.6677 7.3695 -2.4876 14 7 5.6998 6.8012 -3.0745 15 14 4.3323 9.1891 -2.7446 16 1 3.1207 9.5817 -1.9813 17 1 5.4959 9.9790 -2.2679 18 1 4.1135 9.4528 -4.1896 19 6 2.8902 4.3499 -1.4224 20 6 3.0674 3.5209 -0.1442 21 6 3.5271 -0.6972 -0.0003 22 6 2.2372 -1.1077 0.0005 23 6 1.7533 -2.5349 0.0006 24 9 2.6848 -3.3432 0.6611 25 9 0.5213 -2.6095 0.6593 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3634 -0.8896 0.5143 28 1 -0.3633 0.8903 0.5134 29 1 5.5976 4.5483 0.6159 30 1 6.4951 3.3139 -0.3058 31 1 5.5370 4.0770 -2.4052 32 1 6.1178 5.5269 -1.5453 33 1 6.2864 7.3274 -3.6401 34 1 2.8575 3.6868 -2.2869 35 1 1.9646 4.9221 -1.3619 36 1 2.3413 2.7081 -0.1318 37 1 2.9221 4.1580 0.7281 38 1 4.4107 -1.3181 -0.0003 39 1 1.6373 -2.8794 -1.0270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:48 Heat of formation + Delta-G solvation = -23.012154 kcal Electronic energy + Delta-G solvation = -26603.245916 eV Core-core repulsion = 22412.588582 eV Total energy + Delta-G solvation = -4190.657335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.15735 -48.18811 -43.93419 -40.83469 -38.43880 -35.74519 -34.61661 -33.25646 -33.00202 -31.88244 -29.15841 -28.30994 -27.20003 -25.74008 -24.56381 -23.80174 -22.39344 -21.72707 -20.45808 -19.10799 -18.68859 -18.33791 -18.12714 -17.81220 -17.31310 -16.87980 -16.79184 -16.32866 -16.11005 -15.43141 -15.29747 -15.22050 -15.01417 -14.86558 -14.79433 -14.60799 -14.11315 -13.98701 -13.60549 -13.51884 -13.17808 -13.02143 -12.88693 -12.63597 -12.43168 -12.41525 -12.02816 -12.00573 -11.80605 -11.47079 -10.95984 -10.59453 -10.50776 -10.28521 -9.82137 -8.56054 -7.87569 -5.48454 0.29729 0.69387 1.22860 1.47798 1.49076 1.59748 1.93575 2.21431 2.47476 2.52485 3.01863 3.08998 3.27439 3.41807 3.64739 3.82047 3.89491 4.22935 4.26797 4.27687 4.35208 4.37468 4.44568 4.49772 4.64619 4.66158 4.68770 4.78670 4.84485 5.03216 5.18313 5.26078 5.43722 5.60689 5.65888 5.74747 6.36190 6.41883 6.65164 7.04381 7.12140 7.76419 8.34124 9.15288 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.003155 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.940962 B = 8872.082963 C = 9588.955602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.252 5.252 3 N -0.247 5.247 4 C -0.032 4.032 5 C 0.589 3.411 6 O -0.577 6.577 7 N -0.588 5.588 8 C 0.098 3.902 9 C 0.168 3.832 10 N -0.612 5.612 11 C -0.267 4.267 12 H 0.072 0.928 13 C -0.044 4.044 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.291 1.291 18 H -0.291 1.291 19 C 0.136 3.864 20 C 0.069 3.931 21 C -0.148 4.148 22 C -0.065 4.065 23 C 0.360 3.640 24 F -0.195 7.195 25 F -0.195 7.195 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.079 0.921 31 H -0.008 1.008 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.010 0.990 35 H 0.078 0.922 36 H 0.150 0.850 37 H 0.062 0.938 38 H 0.173 0.827 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 -19.254 6.106 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.040 5.040 3 N -0.084 5.084 4 C -0.188 4.188 5 C 0.376 3.624 6 O -0.457 6.457 7 N -0.318 5.318 8 C -0.026 4.026 9 C 0.041 3.959 10 N -0.336 5.336 11 C -0.397 4.397 12 H 0.089 0.911 13 C -0.240 4.240 14 N -0.581 5.581 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.218 1.218 18 H -0.218 1.218 19 C 0.010 3.990 20 C -0.055 4.055 21 C -0.176 4.176 22 C -0.191 4.191 23 C 0.305 3.695 24 F -0.176 7.176 25 F -0.176 7.176 26 H 0.132 0.868 27 H 0.148 0.852 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.010 0.990 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.190 0.810 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.687 -18.483 6.099 24.383 hybrid contribution 0.988 0.661 -0.272 1.219 sum -13.699 -17.822 5.827 23.222 Atomic orbital electron populations 1.23114 0.69730 1.08386 1.07298 1.45982 1.09464 1.01266 1.47277 1.73128 1.02803 1.12999 1.19508 1.21713 0.90534 0.94342 1.12251 1.17389 0.86952 0.81538 0.76484 1.90713 1.24347 1.77259 1.53354 1.47998 1.09222 1.05290 1.69307 1.22403 0.88650 0.91507 1.00026 1.21136 0.88750 0.95126 0.90888 1.44216 1.00743 1.02885 1.85723 1.19555 1.14486 0.84191 1.21470 0.91052 1.26136 0.98059 1.03122 0.96644 1.70055 1.16788 1.36677 1.34535 0.85111 0.77864 0.79649 0.77231 1.18714 1.21751 1.21830 1.21385 0.91507 0.91829 0.94322 1.23284 0.83089 1.00506 0.98663 1.21633 0.97584 0.92769 1.05621 1.22142 0.91652 0.92210 1.13111 1.20050 0.71969 0.82045 0.95426 1.93046 1.66610 1.73735 1.84190 1.92917 1.43927 1.96289 1.84458 0.86766 0.85243 0.87086 0.91626 0.90299 0.99028 0.89644 0.93840 0.97194 0.90399 0.83346 0.91938 0.80975 0.80027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 11.03 127.77 1.41 1.85 16 2 N -0.25 -4.74 3.70 -355.94 -1.32 -6.06 16 3 N -0.25 -6.63 8.31 -48.18 -0.40 -7.03 16 4 C -0.03 -1.03 6.90 42.46 0.29 -0.74 16 5 C 0.59 23.40 7.69 86.75 0.67 24.07 16 6 O -0.58 -25.77 16.36 -3.94 -0.06 -25.84 16 7 N -0.59 -23.88 2.94 -820.72 -2.41 -26.29 16 8 C 0.10 4.33 6.61 86.57 0.57 4.90 16 9 C 0.17 8.63 5.48 86.57 0.47 9.10 16 10 N -0.61 -31.41 2.97 -697.34 -2.07 -33.49 16 11 C -0.27 -14.54 9.55 84.03 0.80 -13.74 16 12 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 13 C -0.04 -2.44 5.31 84.86 0.45 -1.99 16 14 N -0.94 -55.10 10.64 21.65 0.23 -54.87 16 15 Si 0.97 44.18 29.56 68.60 2.03 46.20 16 16 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 19 C 0.14 5.72 6.67 86.42 0.58 6.29 16 20 C 0.07 2.51 6.49 86.42 0.56 3.07 16 21 C -0.15 -3.78 10.42 22.41 0.23 -3.55 16 22 C -0.06 -1.18 6.66 41.40 0.28 -0.91 16 23 C 0.36 3.73 5.72 71.24 0.41 4.13 16 24 F -0.19 -2.97 17.06 44.97 0.77 -2.21 16 25 F -0.19 -1.98 14.49 44.97 0.65 -1.33 16 26 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.13 0.67 5.44 -2.39 -0.01 0.66 16 28 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.08 3.47 7.02 -2.39 -0.02 3.45 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.09 4.86 5.88 -2.39 -0.01 4.85 16 33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 3.02 7.93 -2.39 -0.02 3.00 16 36 H 0.15 4.73 3.67 -90.72 -0.33 4.39 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.17 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.18 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -74.56 327.02 4.91 -69.65 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.77 Total: 8.76 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 6.72 Total: 32.50 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.97 Total: -127.73 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 1.42 Total: -3.54 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -74.56 4.91 -69.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.637 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds