Wall clock time and date at job start Tue Mar 31 2020 10:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47013 * 2 1 4 4 C 1.34775 * 119.99965 * 272.33693 * 3 2 1 5 5 O 1.21573 * 120.00247 * 184.61843 * 4 3 2 6 6 C 1.47714 * 119.99996 * 4.61884 * 4 3 2 7 7 C 1.41498 * 126.51694 * 185.79082 * 6 4 3 8 8 C 1.35364 * 105.50049 * 179.84743 * 7 6 4 9 9 C 1.50705 * 126.38600 * 180.14194 * 8 7 6 10 10 F 1.39896 * 109.47093 * 210.29851 * 9 8 7 11 11 F 1.39903 * 109.47100 * 330.29563 * 9 8 7 12 12 N 1.35031 * 107.23140 * 0.41136 * 8 7 6 13 13 H 0.97001 * 124.89110 * 179.72809 * 12 8 7 14 14 N 1.28474 * 110.22726 * 359.72820 * 12 8 7 15 15 C 1.46503 * 119.99911 * 92.34084 * 3 2 1 16 16 C 1.53504 * 114.20411 * 232.64393 * 15 3 2 17 17 N 1.47067 * 87.98180 * 220.15037 * 16 15 3 18 18 C 1.36935 * 136.05110 * 207.08456 * 17 16 15 19 19 H 1.08000 * 120.00665 * 6.33048 * 18 17 16 20 20 C 1.38814 * 119.99821 * 186.32589 * 18 17 16 21 21 N 1.31624 * 120.00100 * 195.00509 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 15.00609 * 20 18 17 23 23 H 1.48505 * 109.47052 * 269.99802 * 22 20 18 24 24 H 1.48495 * 109.46964 * 29.99594 * 22 20 18 25 25 H 1.48498 * 109.47112 * 150.00076 * 22 20 18 26 26 C 1.47060 * 87.89103 * 27.34433 * 17 16 15 27 27 H 1.09004 * 109.47228 * 300.00055 * 1 2 3 28 28 H 1.08994 * 109.47281 * 60.00088 * 1 2 3 29 29 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46797 * 239.99947 * 2 1 3 31 31 H 1.09003 * 109.47142 * 120.00076 * 2 1 3 32 32 H 1.08004 * 127.25131 * 359.97438 * 7 6 4 33 33 H 1.08997 * 109.47236 * 90.29932 * 9 8 7 34 34 H 1.08996 * 113.28682 * 5.70827 * 15 3 2 35 35 H 1.08999 * 113.46720 * 105.36693 * 16 15 3 36 36 H 1.09004 * 113.46461 * 334.92877 * 16 15 3 37 37 H 0.96996 * 119.99965 * 354.94721 * 21 20 18 38 38 H 1.08997 * 113.46725 * 87.43444 * 26 17 16 39 39 H 1.09003 * 113.47147 * 217.88411 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1980 2.0324 -1.1662 5 8 2.6820 3.1476 -1.1714 6 6 1.8069 1.3911 -2.4381 7 6 2.0360 1.8948 -3.7404 8 6 1.5115 0.9735 -4.5821 9 6 1.5020 1.0408 -6.0876 10 9 0.3713 0.3780 -6.5769 11 9 1.4706 2.3790 -6.4944 12 7 0.9930 -0.0142 -3.8212 13 1 0.5487 -0.8047 -4.1654 14 7 1.1730 0.2437 -2.5755 15 6 2.3113 2.0545 1.2677 16 6 1.6176 3.4138 1.4333 17 7 2.8602 3.9156 2.0392 18 6 3.1938 4.8918 2.9398 19 1 2.4183 5.4396 3.4544 20 6 4.5288 5.1772 3.1912 21 7 4.8622 5.8876 4.2479 22 14 5.8521 4.5530 2.0300 23 1 6.3116 3.2135 2.4773 24 1 5.2978 4.4528 0.6560 25 1 6.9990 5.4964 2.0336 26 6 3.5874 2.9121 1.2475 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5279 2.8187 -4.0069 33 1 2.4005 0.5632 -6.4784 34 1 2.2229 1.3992 2.1342 35 1 0.7759 3.3901 2.1254 36 1 1.3719 3.8940 0.4861 37 1 4.1724 6.2736 4.8102 38 1 3.8608 3.2600 0.2514 39 1 4.4238 2.4608 1.7814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951729188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:38 Heat of formation + Delta-G solvation = 31.704110 kcal Electronic energy + Delta-G solvation = -26632.733665 eV Core-core repulsion = 22444.449006 eV Total energy + Delta-G solvation = -4188.284659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.60514 -47.62972 -43.13047 -40.16713 -37.24541 -35.61668 -32.52620 -32.23169 -31.99725 -30.21305 -27.69933 -26.68690 -25.17693 -24.75927 -23.12381 -22.27570 -21.78341 -20.01296 -19.30698 -18.52873 -18.17998 -17.59648 -17.41961 -16.88174 -16.29511 -16.02935 -15.37478 -14.88192 -14.65305 -14.46977 -14.26936 -14.04635 -13.96541 -13.75523 -13.46108 -13.36377 -13.21804 -12.90371 -12.42254 -12.08371 -11.94673 -11.63247 -11.41361 -11.28793 -11.08040 -10.81969 -10.54786 -10.09469 -9.79068 -9.65909 -9.49830 -9.46857 -9.06897 -8.55855 -8.21705 -6.97860 -6.19163 -3.08434 1.15086 1.58809 2.19478 2.89084 3.23537 3.35478 3.53454 3.53981 3.66707 3.80246 3.93047 4.15340 4.26653 4.72961 4.75888 4.99614 5.03169 5.08748 5.16857 5.32806 5.44348 5.48183 5.53283 5.67280 5.76916 5.86754 5.93876 6.14262 6.22086 6.39987 6.45114 6.50681 6.53389 6.70056 7.26039 7.30611 7.34487 7.60956 8.34259 8.35232 9.09939 9.63379 10.52013 11.31723 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.003586 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.651650 B = 7806.978056 C = 8654.276149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.592 3.408 5 O -0.504 6.504 6 C -0.002 4.002 7 C -0.126 4.126 8 C -0.078 4.078 9 C 0.352 3.648 10 F -0.200 7.200 11 F -0.183 7.183 12 N -0.366 5.366 13 H 0.448 0.552 14 N -0.227 5.227 15 C 0.098 3.902 16 C 0.113 3.887 17 N -0.618 5.618 18 C -0.297 4.297 19 H 0.081 0.919 20 C -0.024 4.024 21 N -0.936 5.936 22 Si 1.058 2.942 23 H -0.296 1.296 24 H -0.274 1.274 25 H -0.297 1.297 26 C 0.084 3.916 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.259 0.741 38 H 0.088 0.912 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -18.944 -21.696 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.377 3.623 5 O -0.377 6.377 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.205 4.205 9 C 0.297 3.703 10 F -0.181 7.181 11 F -0.164 7.164 12 N -0.081 5.081 13 H 0.294 0.706 14 N -0.065 5.065 15 C -0.005 4.005 16 C -0.015 4.015 17 N -0.346 5.346 18 C -0.424 4.424 19 H 0.099 0.901 20 C -0.223 4.223 21 N -0.578 5.578 22 Si 0.890 3.110 23 H -0.224 1.224 24 H -0.200 1.200 25 H -0.225 1.225 26 C -0.042 4.042 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.191 0.809 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.659 -19.001 -21.110 29.416 hybrid contribution -1.861 0.330 -0.479 1.949 sum -9.519 -18.671 -21.588 30.088 Atomic orbital electron populations 1.22090 0.95852 1.01605 1.02195 1.21748 0.94812 0.82100 1.03174 1.47858 1.64279 1.14140 1.05673 1.16911 0.78974 0.84984 0.81397 1.90845 1.42693 1.18451 1.85673 1.22225 1.04539 0.93759 0.95639 1.21618 1.03158 1.00664 0.90002 1.21792 1.08995 0.95047 0.94626 1.19673 0.88081 0.76793 0.85776 1.93024 1.55538 1.80536 1.89016 1.93077 1.97029 1.35399 1.90878 1.43292 1.42522 1.19235 1.03088 0.70619 1.73933 1.16810 1.17124 0.98591 1.23705 0.99859 0.93165 0.83811 1.22679 0.91589 0.90689 0.96532 1.45905 1.02821 1.39362 1.46492 1.20119 0.94165 1.13807 1.14263 0.90093 1.25737 0.96800 0.99684 1.00045 1.70922 1.35256 1.37698 1.13944 0.83856 0.75601 0.75059 0.76528 1.22379 1.19956 1.22480 1.23469 0.93849 0.89049 0.97838 0.92705 0.92273 0.92123 0.89187 0.90610 0.80944 0.84746 0.86585 0.94123 0.93479 0.93036 0.89483 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.71 37.16 0.36 -1.26 16 2 C 0.11 1.18 5.69 -4.05 -0.02 1.15 16 3 N -0.59 -9.05 2.76 -166.88 -0.46 -9.51 16 4 C 0.59 9.87 7.13 -12.39 -0.09 9.78 16 5 O -0.50 -10.44 12.50 5.30 0.07 -10.37 16 6 C 0.00 -0.02 6.67 -82.77 -0.55 -0.58 16 7 C -0.13 -1.40 10.41 -39.37 -0.41 -1.81 16 8 C -0.08 -0.62 6.84 -82.21 -0.56 -1.18 16 9 C 0.35 1.96 5.83 36.01 0.21 2.17 16 10 F -0.20 -1.26 17.29 2.25 0.04 -1.22 16 11 F -0.18 -1.50 17.05 2.25 0.04 -1.46 16 12 N -0.37 -2.61 6.79 33.50 0.23 -2.38 16 13 H 0.45 1.61 8.96 -190.44 -1.71 -0.10 16 14 N -0.23 -2.29 7.25 33.42 0.24 -2.05 16 15 C 0.10 1.83 4.80 -67.67 -0.32 1.50 16 16 C 0.11 2.47 8.10 -8.49 -0.07 2.40 16 17 N -0.62 -16.43 3.64 -184.58 -0.67 -17.10 16 18 C -0.30 -9.06 11.03 -15.06 -0.17 -9.23 16 19 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 20 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 21 N -0.94 -30.69 13.70 55.49 0.76 -29.93 16 22 Si 1.06 28.45 25.47 -169.99 -4.33 24.12 16 23 H -0.30 -7.56 6.97 56.52 0.39 -7.17 16 24 H -0.27 -7.15 5.62 56.52 0.32 -6.84 16 25 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 26 C 0.08 1.96 4.96 -8.36 -0.04 1.91 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.66 6.70 -51.93 -0.35 0.32 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.94 5.65 -51.93 -0.29 0.64 16 31 H 0.08 0.76 7.94 -51.93 -0.41 0.34 16 32 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.12 1.94 7.96 -51.93 -0.41 1.53 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.09 6.49 -51.93 -0.34 0.75 16 37 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 38 H 0.09 2.16 4.13 -51.93 -0.21 1.95 16 39 H 0.04 1.00 6.07 -51.93 -0.32 0.69 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -37.59 324.18 -6.79 -44.38 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.82 Total: -3.36 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.76 Total: 4.01 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.10 Total: -60.98 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 28.45 SS G_CDS: -4.33 Total: 24.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.59 -6.79 -44.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951729188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.084 kcal (2) G-P(sol) polarization free energy of solvation -37.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds