Wall clock time and date at job start Tue Mar 31 2020 10:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47013 * 2 1 4 4 C 1.34775 * 119.99965 * 272.33693 * 3 2 1 5 5 O 1.21573 * 120.00247 * 184.61843 * 4 3 2 6 6 C 1.47714 * 119.99996 * 4.61884 * 4 3 2 7 7 C 1.41498 * 126.51694 * 185.79082 * 6 4 3 8 8 C 1.35364 * 105.50049 * 179.84743 * 7 6 4 9 9 C 1.50705 * 126.38600 * 180.14194 * 8 7 6 10 10 F 1.39896 * 109.47093 * 210.29851 * 9 8 7 11 11 F 1.39903 * 109.47100 * 330.29563 * 9 8 7 12 12 N 1.35031 * 107.23140 * 0.41136 * 8 7 6 13 13 H 0.97001 * 124.89110 * 179.72809 * 12 8 7 14 14 N 1.28474 * 110.22726 * 359.72820 * 12 8 7 15 15 C 1.46503 * 119.99911 * 92.34084 * 3 2 1 16 16 C 1.53504 * 114.20411 * 232.64393 * 15 3 2 17 17 N 1.47067 * 87.98180 * 220.15037 * 16 15 3 18 18 C 1.36935 * 136.05110 * 207.08456 * 17 16 15 19 19 H 1.08000 * 120.00665 * 6.33048 * 18 17 16 20 20 C 1.38814 * 119.99821 * 186.32589 * 18 17 16 21 21 N 1.31624 * 120.00100 * 195.00509 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 15.00609 * 20 18 17 23 23 H 1.48505 * 109.47052 * 269.99802 * 22 20 18 24 24 H 1.48495 * 109.46964 * 29.99594 * 22 20 18 25 25 H 1.48498 * 109.47112 * 150.00076 * 22 20 18 26 26 C 1.47060 * 87.89103 * 27.34433 * 17 16 15 27 27 H 1.09004 * 109.47228 * 300.00055 * 1 2 3 28 28 H 1.08994 * 109.47281 * 60.00088 * 1 2 3 29 29 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46797 * 239.99947 * 2 1 3 31 31 H 1.09003 * 109.47142 * 120.00076 * 2 1 3 32 32 H 1.08004 * 127.25131 * 359.97438 * 7 6 4 33 33 H 1.08997 * 109.47236 * 90.29932 * 9 8 7 34 34 H 1.08996 * 113.28682 * 5.70827 * 15 3 2 35 35 H 1.08999 * 113.46720 * 105.36693 * 16 15 3 36 36 H 1.09004 * 113.46461 * 334.92877 * 16 15 3 37 37 H 0.96996 * 119.99965 * 354.94721 * 21 20 18 38 38 H 1.08997 * 113.46725 * 87.43444 * 26 17 16 39 39 H 1.09003 * 113.47147 * 217.88411 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1980 2.0324 -1.1662 5 8 2.6820 3.1476 -1.1714 6 6 1.8069 1.3911 -2.4381 7 6 2.0360 1.8948 -3.7404 8 6 1.5115 0.9735 -4.5821 9 6 1.5020 1.0408 -6.0876 10 9 0.3713 0.3780 -6.5769 11 9 1.4706 2.3790 -6.4944 12 7 0.9930 -0.0142 -3.8212 13 1 0.5487 -0.8047 -4.1654 14 7 1.1730 0.2437 -2.5755 15 6 2.3113 2.0545 1.2677 16 6 1.6176 3.4138 1.4333 17 7 2.8602 3.9156 2.0392 18 6 3.1938 4.8918 2.9398 19 1 2.4183 5.4396 3.4544 20 6 4.5288 5.1772 3.1912 21 7 4.8622 5.8876 4.2479 22 14 5.8521 4.5530 2.0300 23 1 6.3116 3.2135 2.4773 24 1 5.2978 4.4528 0.6560 25 1 6.9990 5.4964 2.0336 26 6 3.5874 2.9121 1.2475 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5279 2.8187 -4.0069 33 1 2.4005 0.5632 -6.4784 34 1 2.2229 1.3992 2.1342 35 1 0.7759 3.3901 2.1254 36 1 1.3719 3.8940 0.4861 37 1 4.1724 6.2736 4.8102 38 1 3.8608 3.2600 0.2514 39 1 4.4238 2.4608 1.7814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951729188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:37 Heat of formation + Delta-G solvation = 3.638100 kcal Electronic energy + Delta-G solvation = -26633.950699 eV Core-core repulsion = 22444.449006 eV Total energy + Delta-G solvation = -4189.501693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09668 -48.13518 -43.91984 -41.60702 -38.89712 -36.84666 -34.58241 -33.08332 -32.96309 -31.39094 -29.53808 -27.29134 -26.97536 -26.12148 -24.37668 -23.54625 -22.55025 -21.77348 -20.17124 -19.58165 -19.54039 -18.63498 -18.11761 -18.03512 -17.55838 -16.95882 -16.88288 -16.24174 -15.95375 -15.57303 -15.37554 -15.23568 -15.04142 -14.83711 -14.66608 -14.44754 -14.33818 -13.97921 -13.84772 -13.47848 -13.16942 -12.96209 -12.71083 -12.61168 -12.50199 -12.14093 -11.96863 -11.74213 -11.54071 -11.29053 -11.01438 -10.77287 -10.56727 -10.38496 -9.60459 -9.17469 -8.64053 -5.46388 0.32491 0.69235 1.36458 1.50763 1.52486 1.68618 1.85318 2.19230 2.50127 2.59722 3.08312 3.12424 3.14627 3.18838 3.49321 3.57892 3.88691 3.91933 4.16383 4.18051 4.24752 4.43895 4.51006 4.52994 4.63892 4.67782 4.71549 4.82243 4.88653 5.02629 5.11686 5.16403 5.19138 5.45511 5.74578 5.82597 5.94007 6.35310 6.60417 6.69558 7.09945 7.31184 8.28209 8.88408 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.003586 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.651650 B = 7806.978056 C = 8654.276149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.102 3.898 3 N -0.585 5.585 4 C 0.588 3.412 5 O -0.556 6.556 6 C -0.030 4.030 7 C -0.151 4.151 8 C -0.056 4.056 9 C 0.354 3.646 10 F -0.201 7.201 11 F -0.199 7.199 12 N -0.340 5.340 13 H 0.468 0.532 14 N -0.216 5.216 15 C 0.134 3.866 16 C 0.111 3.889 17 N -0.647 5.647 18 C -0.289 4.289 19 H 0.053 0.947 20 C -0.078 4.078 21 N -0.966 5.966 22 Si 1.100 2.900 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.299 1.299 26 C 0.076 3.924 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.145 0.855 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.248 0.752 38 H 0.075 0.925 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -22.801 -24.097 34.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.316 5.316 4 C 0.376 3.624 5 O -0.433 6.433 6 C -0.187 4.187 7 C -0.179 4.179 8 C -0.184 4.184 9 C 0.299 3.701 10 F -0.182 7.182 11 F -0.181 7.181 12 N -0.059 5.059 13 H 0.317 0.683 14 N -0.055 5.055 15 C 0.029 3.971 16 C -0.016 4.016 17 N -0.375 5.375 18 C -0.417 4.417 19 H 0.071 0.929 20 C -0.271 4.271 21 N -0.612 5.612 22 Si 0.926 3.074 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.227 1.227 26 C -0.049 4.049 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.182 0.818 33 H 0.201 0.799 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.421 -22.949 -23.539 33.936 hybrid contribution -1.835 1.466 0.149 2.353 sum -10.256 -21.483 -23.390 33.373 Atomic orbital electron populations 1.22036 0.94843 1.03108 1.01106 1.22063 0.95538 0.79536 1.04847 1.47885 1.63998 1.15579 1.04159 1.17400 0.77880 0.84431 0.82703 1.90807 1.45046 1.20774 1.86625 1.21678 1.07194 0.95368 0.94509 1.21645 1.04671 1.01482 0.90086 1.22004 1.06833 0.93749 0.95778 1.20165 0.89612 0.76265 0.84017 1.93027 1.56033 1.80391 1.88798 1.93051 1.97150 1.37008 1.90845 1.43368 1.40872 1.19446 1.02227 0.68262 1.73833 1.15971 1.15807 0.99874 1.23150 0.95381 0.92283 0.86274 1.22784 0.90688 0.92486 0.95644 1.46017 1.05725 1.39127 1.46669 1.20026 0.93574 1.13804 1.14281 0.92913 1.26912 0.99224 1.00185 1.00778 1.71007 1.34989 1.39815 1.15367 0.83303 0.73392 0.75741 0.75002 1.19776 1.19509 1.22658 1.23550 0.95811 0.89171 0.96396 0.93692 0.93474 0.89261 0.87909 0.88570 0.81819 0.79877 0.83721 0.93044 0.94777 0.94298 0.90728 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.71 71.98 0.70 -1.90 16 2 C 0.10 1.93 5.69 86.38 0.49 2.42 16 3 N -0.59 -16.99 2.76 -800.16 -2.21 -19.20 16 4 C 0.59 19.32 7.13 86.75 0.62 19.94 16 5 O -0.56 -23.60 12.50 -3.95 -0.05 -23.65 16 6 C -0.03 -0.73 6.67 42.46 0.28 -0.45 16 7 C -0.15 -3.18 10.41 22.41 0.23 -2.95 16 8 C -0.06 -0.73 6.84 41.40 0.28 -0.44 16 9 C 0.35 2.69 5.83 71.24 0.42 3.11 16 10 F -0.20 -1.80 17.29 44.97 0.78 -1.02 16 11 F -0.20 -2.86 17.05 44.97 0.77 -2.09 16 12 N -0.34 -3.62 6.79 -47.93 -0.33 -3.94 16 13 H 0.47 1.26 8.96 -219.99 -1.97 -0.71 16 14 N -0.22 -3.72 7.25 -48.18 -0.35 -4.07 16 15 C 0.13 4.77 4.80 45.56 0.22 4.99 16 16 C 0.11 4.86 8.10 83.19 0.67 5.53 16 17 N -0.65 -34.82 3.64 -737.89 -2.68 -37.50 16 18 C -0.29 -18.16 11.03 84.03 0.93 -17.23 16 19 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 20 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 21 N -0.97 -65.29 13.70 21.65 0.30 -64.99 16 22 Si 1.10 58.49 25.47 68.60 1.75 60.23 16 23 H -0.27 -13.25 6.97 99.48 0.69 -12.55 16 24 H -0.27 -14.02 5.62 99.48 0.56 -13.46 16 25 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 26 C 0.08 3.51 4.96 83.28 0.41 3.93 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.92 6.70 -2.39 -0.02 0.91 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.75 5.65 -2.39 -0.01 1.73 16 31 H 0.10 1.49 7.94 -2.39 -0.02 1.47 16 32 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.18 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.15 4.38 7.96 -2.39 -0.02 4.36 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.62 6.49 -2.38 -0.02 1.60 16 37 H 0.25 16.70 8.73 -92.71 -0.81 15.89 16 38 H 0.08 3.74 4.13 -2.39 -0.01 3.73 16 39 H 0.04 1.91 6.07 -2.39 -0.01 1.90 16 Total: -1.00 -85.92 324.18 2.64 -83.28 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -1.06 Total: 0.55 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.73 Total: 12.41 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.27 Total: -129.71 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 1.54 Total: -3.11 kcal Atomic # 14 Polarization: 58.49 SS G_CDS: 1.75 Total: 60.23 kcal Total: -85.92 2.64 -83.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951729188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.917 kcal (2) G-P(sol) polarization free energy of solvation -85.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds