Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 120.00124 * 2 1 4 4 H 1.48499 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47012 * 300.00018 * 3 2 1 6 6 H 1.48501 * 109.47010 * 59.99992 * 3 2 1 7 7 C 1.38811 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99616 * 198.12683 * 7 2 1 9 9 N 1.36938 * 120.00373 * 18.13098 * 7 2 1 10 10 C 1.43459 * 118.94127 * 203.73814 * 9 7 2 11 11 C 1.53799 * 107.96159 * 273.62362 * 10 9 7 12 12 C 1.47138 * 111.84287 * 281.67560 * 11 10 9 13 13 N 1.48213 * 110.34504 * 58.29681 * 12 11 10 14 14 C 1.34770 * 119.97459 * 102.46473 * 13 12 11 15 15 O 1.21581 * 119.99821 * 354.16090 * 14 13 12 16 16 C 1.47696 * 120.00194 * 174.16137 * 14 13 12 17 17 C 1.40104 * 120.02514 * 205.13260 * 16 14 13 18 18 C 1.36426 * 120.68929 * 179.70258 * 17 16 14 19 19 C 1.39160 * 120.27488 * 0.25190 * 18 17 16 20 20 O 1.34748 * 133.25697 * 180.02562 * 19 18 17 21 21 C 1.34441 * 110.95540 * 180.02562 * 20 19 18 22 22 C 1.33963 * 110.20110 * 359.97438 * 21 20 19 23 23 C 1.40681 * 119.53850 * 0.02755 * 19 18 17 24 24 C 1.39083 * 120.20413 * 359.97438 * 23 19 18 25 25 C 1.43624 * 120.05565 * 282.74116 * 13 12 11 26 26 C 1.48858 * 118.93430 * 23.71624 * 9 7 2 27 27 H 0.97004 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.75978 * 154.01053 * 10 9 7 29 29 H 1.08989 * 109.80936 * 33.26794 * 10 9 7 30 30 H 1.09002 * 109.00603 * 161.06615 * 11 10 9 31 31 H 1.09003 * 108.94479 * 42.24177 * 11 10 9 32 32 H 1.09004 * 109.32488 * 298.02773 * 12 11 10 33 33 H 1.09002 * 109.18273 * 178.47208 * 12 11 10 34 34 H 1.08003 * 119.65639 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.86760 * 180.27999 * 18 17 16 36 36 H 1.08000 * 124.90295 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.92338 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.32750 * 180.02562 * 24 23 19 39 39 H 1.08996 * 108.87415 * 211.19286 * 25 13 12 40 40 H 1.09005 * 108.87512 * 329.63296 * 25 13 12 41 41 H 1.09008 * 109.47667 * 260.60127 * 26 9 7 42 42 H 1.08999 * 109.48536 * 20.63213 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0500 -1.2252 0.2916 9 7 1.3765 -2.3588 -0.3680 10 6 1.8897 -3.6124 0.1046 11 6 2.9831 -4.0759 -0.8726 12 6 2.4119 -4.6629 -2.0949 13 7 1.5349 -3.6816 -2.7766 14 6 1.9793 -3.0244 -3.8660 15 8 3.1328 -3.1560 -4.2270 16 6 1.0650 -2.1442 -4.6215 17 6 1.3034 -1.8839 -5.9774 18 6 0.4643 -1.0778 -6.6897 19 6 -0.6408 -0.4973 -6.0746 20 8 -1.6183 0.3199 -6.5131 21 6 -2.4789 0.6146 -5.5232 22 6 -2.1068 0.0046 -4.3900 23 6 -0.8870 -0.7469 -4.7122 24 6 -0.0318 -1.5685 -3.9857 25 6 0.2141 -3.4262 -2.2736 26 6 0.1772 -2.2748 -1.2457 27 1 -0.4850 0.8401 -0.0004 28 1 1.0878 -4.3500 0.1374 29 1 2.3147 -3.4857 1.1002 30 1 3.6075 -4.8209 -0.3792 31 1 3.6005 -3.2199 -1.1449 32 1 1.8294 -5.5462 -1.8328 33 1 3.2212 -4.9507 -2.7660 34 1 2.1580 -2.3295 -6.4648 35 1 0.6582 -0.8898 -7.7353 36 1 -3.3455 1.2507 -5.6266 37 1 -2.6035 0.0558 -3.4324 38 1 -0.2192 -1.7618 -2.9397 39 1 -0.4373 -3.1683 -3.1086 40 1 -0.1644 -4.3322 -1.8003 41 1 -0.7242 -2.3566 -0.6382 42 1 0.1767 -1.3193 -1.7702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981218836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = 76.434139 kcal Electronic energy + Delta-G solvation = -27401.051895 eV Core-core repulsion = 23736.643654 eV Total energy + Delta-G solvation = -3664.408241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31886 -40.21239 -37.43828 -36.89992 -34.34434 -33.39970 -32.55361 -31.11960 -29.95317 -29.23396 -27.92690 -25.65507 -23.84368 -23.66658 -22.91509 -21.57237 -21.07077 -19.82027 -18.94917 -17.84914 -17.13705 -16.52466 -16.41204 -16.00525 -15.87075 -15.10193 -14.79004 -14.66923 -14.17536 -13.68261 -13.55579 -13.18143 -13.13492 -12.75633 -12.65118 -12.53256 -12.42150 -12.15501 -11.87304 -11.67532 -11.39792 -11.08029 -10.83505 -10.67078 -10.48812 -10.27070 -10.08605 -10.02341 -9.81631 -9.73226 -9.35251 -8.52073 -8.44724 -8.06859 -8.05151 -6.78897 -5.86758 -3.24728 1.07665 1.18076 2.51305 2.87691 3.18523 3.35459 3.44496 3.47365 3.48997 4.00690 4.46846 4.57659 4.80670 4.90234 5.14605 5.17293 5.31074 5.44171 5.45399 5.48462 5.57598 5.60855 5.73509 5.80412 5.90062 5.98629 6.02599 6.03967 6.22209 6.29577 6.35518 6.41676 6.47806 6.55271 6.56074 6.69932 6.79394 6.82923 7.00583 7.20448 7.25809 7.29667 7.77324 7.92439 8.36146 8.64072 9.13478 9.81507 10.25714 11.21959 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.006716 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.734120 B = 4168.307057 C = 5573.996739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.162 3.838 11 C -0.171 4.171 12 C 0.131 3.869 13 N -0.577 5.577 14 C 0.568 3.432 15 O -0.552 6.552 16 C -0.150 4.150 17 C -0.041 4.041 18 C -0.125 4.125 19 C 0.066 3.934 20 O -0.198 6.198 21 C -0.012 4.012 22 C -0.188 4.188 23 C -0.143 4.143 24 C -0.071 4.071 25 C 0.051 3.949 26 C 0.143 3.857 27 H 0.253 0.747 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.207 0.793 37 H 0.163 0.837 38 H 0.199 0.801 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -5.243 -9.265 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.194 4.194 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.308 5.308 10 C 0.034 3.966 11 C -0.213 4.213 12 C 0.010 3.990 13 N -0.307 5.307 14 C 0.357 3.643 15 O -0.432 6.432 16 C -0.153 4.153 17 C -0.060 4.060 18 C -0.144 4.144 19 C 0.018 3.982 20 O -0.100 6.100 21 C -0.076 4.076 22 C -0.207 4.207 23 C -0.143 4.143 24 C -0.088 4.088 25 C -0.074 4.074 26 C 0.018 3.982 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.223 0.777 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.002 -5.127 -9.688 12.049 hybrid contribution 0.296 1.178 0.247 1.239 sum -4.706 -3.949 -9.441 11.264 Atomic orbital electron populations 1.70019 1.05043 1.25410 1.54794 1.24880 0.95293 0.98176 1.01020 0.86336 0.79713 0.84248 0.77291 1.20257 1.21493 1.21706 1.19231 0.93415 0.85272 1.40090 0.91517 1.43575 1.31592 1.01667 1.53983 1.20310 0.93556 0.88005 0.94760 1.21883 1.01058 1.01068 0.97248 1.20574 0.93952 0.89877 0.94599 1.47211 1.15709 1.40972 1.26838 1.18051 0.86781 0.79288 0.80179 1.90704 1.17920 1.64701 1.69844 1.19782 0.97625 1.02988 0.94929 1.20641 0.97556 0.95148 0.92610 1.19463 0.93242 1.01023 1.00629 1.19931 0.91183 0.93877 0.93225 1.83948 1.32473 1.55298 1.38260 1.23877 0.95559 1.02182 0.85964 1.22655 0.97013 1.00971 1.00067 1.19967 0.98301 1.02414 0.93666 1.23167 0.90516 0.91046 1.04099 1.22810 0.83901 1.01461 0.99240 1.22186 0.90425 0.95540 0.90065 0.93679 0.94731 0.93381 0.92495 0.91107 0.91920 0.90406 0.84115 0.84952 0.77695 0.81914 0.78553 0.89524 0.91571 0.93291 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.61 11.04 55.49 0.61 -24.00 16 2 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 3 Si 0.89 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.66 9.27 -15.06 -0.14 -6.80 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 9 N -0.59 -13.70 2.54 -172.33 -0.44 -14.13 16 10 C 0.16 3.18 5.63 -5.24 -0.03 3.15 16 11 C -0.17 -3.06 5.64 -29.13 -0.16 -3.22 16 12 C 0.13 2.18 5.67 -5.91 -0.03 2.15 16 13 N -0.58 -10.61 2.47 -178.13 -0.44 -11.05 16 14 C 0.57 11.39 7.50 -12.40 -0.09 11.30 16 15 O -0.55 -12.30 16.08 5.29 0.09 -12.22 16 16 C -0.15 -2.76 5.63 -104.96 -0.59 -3.35 16 17 C -0.04 -0.65 9.51 -39.54 -0.38 -1.03 16 18 C -0.13 -1.83 9.99 -39.89 -0.40 -2.22 16 19 C 0.07 1.05 7.42 -38.32 -0.28 0.76 16 20 O -0.20 -2.87 10.57 4.10 0.04 -2.82 16 21 C -0.01 -0.14 11.95 29.23 0.35 0.21 16 22 C -0.19 -2.71 11.15 -37.60 -0.42 -3.13 16 23 C -0.14 -2.43 6.39 -105.18 -0.67 -3.10 16 24 C -0.07 -1.30 7.22 -38.90 -0.28 -1.58 16 25 C 0.05 0.88 4.68 -4.84 -0.02 0.86 16 26 C 0.14 3.06 4.42 -2.01 -0.01 3.05 16 27 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 29 H 0.05 0.96 8.02 -51.94 -0.42 0.55 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 32 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.08 1.31 7.19 -51.93 -0.37 0.94 16 34 H 0.14 2.05 7.83 -52.48 -0.41 1.64 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.21 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.20 3.75 1.48 -52.53 -0.08 3.68 16 39 H 0.09 1.40 4.60 -51.93 -0.24 1.16 16 40 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 41 H 0.05 1.10 8.02 -51.92 -0.42 0.68 16 42 H 0.10 2.28 4.14 -51.93 -0.22 2.06 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -31.58 331.62 -8.43 -40.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.01 Total: 5.28 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.25 Total: -2.94 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.26 Total: -49.19 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.13 Total: -15.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.58 -8.43 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981218836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.445 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds