Wall clock time and date at job start Tue Mar 31 2020 11:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 120.00124 * 2 1 4 4 H 1.48499 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47012 * 300.00018 * 3 2 1 6 6 H 1.48501 * 109.47010 * 59.99992 * 3 2 1 7 7 C 1.38811 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99616 * 198.12683 * 7 2 1 9 9 N 1.36938 * 120.00373 * 18.13098 * 7 2 1 10 10 C 1.43459 * 118.94127 * 203.73814 * 9 7 2 11 11 C 1.53799 * 107.96159 * 273.62362 * 10 9 7 12 12 C 1.47138 * 111.84287 * 281.67560 * 11 10 9 13 13 N 1.48213 * 110.34504 * 58.29681 * 12 11 10 14 14 C 1.34770 * 119.97459 * 102.46473 * 13 12 11 15 15 O 1.21581 * 119.99821 * 354.16090 * 14 13 12 16 16 C 1.47696 * 120.00194 * 174.16137 * 14 13 12 17 17 C 1.40104 * 120.02514 * 205.13260 * 16 14 13 18 18 C 1.36426 * 120.68929 * 179.70258 * 17 16 14 19 19 C 1.39160 * 120.27488 * 0.25190 * 18 17 16 20 20 O 1.34748 * 133.25697 * 180.02562 * 19 18 17 21 21 C 1.34441 * 110.95540 * 180.02562 * 20 19 18 22 22 C 1.33963 * 110.20110 * 359.97438 * 21 20 19 23 23 C 1.40681 * 119.53850 * 0.02755 * 19 18 17 24 24 C 1.39083 * 120.20413 * 359.97438 * 23 19 18 25 25 C 1.43624 * 120.05565 * 282.74116 * 13 12 11 26 26 C 1.48858 * 118.93430 * 23.71624 * 9 7 2 27 27 H 0.97004 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.75978 * 154.01053 * 10 9 7 29 29 H 1.08989 * 109.80936 * 33.26794 * 10 9 7 30 30 H 1.09002 * 109.00603 * 161.06615 * 11 10 9 31 31 H 1.09003 * 108.94479 * 42.24177 * 11 10 9 32 32 H 1.09004 * 109.32488 * 298.02773 * 12 11 10 33 33 H 1.09002 * 109.18273 * 178.47208 * 12 11 10 34 34 H 1.08003 * 119.65639 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.86760 * 180.27999 * 18 17 16 36 36 H 1.08000 * 124.90295 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.92338 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.32750 * 180.02562 * 24 23 19 39 39 H 1.08996 * 108.87415 * 211.19286 * 25 13 12 40 40 H 1.09005 * 108.87512 * 329.63296 * 25 13 12 41 41 H 1.09008 * 109.47667 * 260.60127 * 26 9 7 42 42 H 1.08999 * 109.48536 * 20.63213 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0500 -1.2252 0.2916 9 7 1.3765 -2.3588 -0.3680 10 6 1.8897 -3.6124 0.1046 11 6 2.9831 -4.0759 -0.8726 12 6 2.4119 -4.6629 -2.0949 13 7 1.5349 -3.6816 -2.7766 14 6 1.9793 -3.0244 -3.8660 15 8 3.1328 -3.1560 -4.2270 16 6 1.0650 -2.1442 -4.6215 17 6 1.3034 -1.8839 -5.9774 18 6 0.4643 -1.0778 -6.6897 19 6 -0.6408 -0.4973 -6.0746 20 8 -1.6183 0.3199 -6.5131 21 6 -2.4789 0.6146 -5.5232 22 6 -2.1068 0.0046 -4.3900 23 6 -0.8870 -0.7469 -4.7122 24 6 -0.0318 -1.5685 -3.9857 25 6 0.2141 -3.4262 -2.2736 26 6 0.1772 -2.2748 -1.2457 27 1 -0.4850 0.8401 -0.0004 28 1 1.0878 -4.3500 0.1374 29 1 2.3147 -3.4857 1.1002 30 1 3.6075 -4.8209 -0.3792 31 1 3.6005 -3.2199 -1.1449 32 1 1.8294 -5.5462 -1.8328 33 1 3.2212 -4.9507 -2.7660 34 1 2.1580 -2.3295 -6.4648 35 1 0.6582 -0.8898 -7.7353 36 1 -3.3455 1.2507 -5.6266 37 1 -2.6035 0.0558 -3.4324 38 1 -0.2192 -1.7618 -2.9397 39 1 -0.4373 -3.1683 -3.1086 40 1 -0.1644 -4.3322 -1.8003 41 1 -0.7242 -2.3566 -0.6382 42 1 0.1767 -1.3193 -1.7702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981218836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:58 Heat of formation + Delta-G solvation = 58.399585 kcal Electronic energy + Delta-G solvation = -27401.833932 eV Core-core repulsion = 23736.643654 eV Total energy + Delta-G solvation = -3665.190278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.46372 -41.65945 -38.86746 -38.38908 -36.04217 -34.87178 -33.74899 -32.95530 -31.28837 -30.45721 -29.51295 -27.30644 -25.54405 -25.09816 -24.19465 -22.86732 -22.26944 -21.49937 -20.35094 -19.28148 -18.47434 -18.12939 -17.71551 -17.43779 -17.09132 -16.70815 -16.35558 -16.15770 -15.84145 -15.30375 -14.91050 -14.67418 -14.45262 -14.19530 -14.09072 -13.87679 -13.69054 -13.56917 -13.27729 -13.18426 -13.07884 -12.82264 -12.55725 -12.37846 -12.15989 -11.97413 -11.72423 -11.48660 -11.39323 -11.19684 -10.83383 -10.50186 -9.77147 -9.52412 -9.22333 -8.68841 -7.89810 -5.27903 -0.20675 -0.02986 1.36188 1.41729 1.42346 1.48763 1.74883 1.79565 2.09625 2.47398 2.68231 3.22560 3.37692 3.59631 3.61787 3.72661 4.02893 4.07459 4.16872 4.24715 4.26131 4.32235 4.42452 4.45950 4.54642 4.65636 4.67697 4.78888 4.87369 4.92080 5.01736 5.09319 5.15250 5.17469 5.24979 5.28503 5.42930 5.48325 5.49139 5.54211 5.65850 5.76388 6.10486 6.36749 6.44837 7.13310 7.16122 7.92297 8.29777 9.15314 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.006716 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.734120 B = 4168.307057 C = 5573.996739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.036 4.036 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.257 4.257 8 H 0.052 0.948 9 N -0.601 5.601 10 C 0.157 3.843 11 C -0.157 4.157 12 C 0.126 3.874 13 N -0.577 5.577 14 C 0.558 3.442 15 O -0.584 6.584 16 C -0.168 4.168 17 C -0.051 4.051 18 C -0.110 4.110 19 C 0.053 3.947 20 O -0.198 6.198 21 C 0.018 3.982 22 C -0.222 4.222 23 C -0.162 4.162 24 C -0.089 4.089 25 C 0.062 3.938 26 C 0.150 3.850 27 H 0.251 0.749 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.258 0.742 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -5.724 -10.574 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.232 4.232 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.387 4.387 8 H 0.070 0.930 9 N -0.323 5.323 10 C 0.030 3.970 11 C -0.197 4.197 12 C 0.006 3.994 13 N -0.306 5.306 14 C 0.349 3.651 15 O -0.467 6.467 16 C -0.171 4.171 17 C -0.070 4.070 18 C -0.128 4.128 19 C 0.005 3.995 20 O -0.099 6.099 21 C -0.045 4.045 22 C -0.241 4.241 23 C -0.163 4.163 24 C -0.106 4.106 25 C -0.063 4.063 26 C 0.025 3.975 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.274 0.726 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.053 0.947 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.230 -5.640 -10.980 13.827 hybrid contribution 0.632 1.354 0.654 1.631 sum -5.598 -4.287 -10.326 12.504 Atomic orbital electron populations 1.70098 1.05447 1.25463 1.55635 1.25333 0.96002 0.99962 1.01882 0.85643 0.78630 0.81999 0.76889 1.20607 1.22193 1.21252 1.19320 0.93000 0.86923 1.39496 0.93039 1.43799 1.31899 1.01945 1.54689 1.20487 0.94686 0.87203 0.94651 1.21698 1.00170 1.00222 0.97652 1.20770 0.94452 0.90599 0.93608 1.47362 1.16173 1.40710 1.26386 1.18447 0.86663 0.79343 0.80663 1.90667 1.19158 1.65976 1.70892 1.19853 0.97720 1.03540 0.96011 1.20797 0.98402 0.95876 0.91886 1.19797 0.91902 0.99130 1.01993 1.20161 0.91979 0.94409 0.92943 1.83982 1.32325 1.54738 1.38841 1.24813 0.95169 1.00194 0.84336 1.22863 0.97105 1.02543 1.01564 1.20307 0.99092 1.02423 0.94485 1.23006 0.91379 0.92510 1.03710 1.22630 0.83862 1.00974 0.98787 1.22035 0.89020 0.96215 0.90218 0.93967 0.92021 0.94254 0.89175 0.95575 0.87893 0.90680 0.83086 0.81478 0.72634 0.81375 0.79762 0.88221 0.88565 0.94739 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 11.04 21.65 0.24 -50.69 16 2 C -0.04 -1.96 4.86 84.86 0.41 -1.55 16 3 Si 0.94 45.97 29.59 68.60 2.03 48.00 16 4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.26 -14.01 9.27 84.03 0.78 -13.23 16 8 H 0.05 2.90 7.89 -2.91 -0.02 2.88 16 9 N -0.60 -28.36 2.54 -699.12 -1.77 -30.14 16 10 C 0.16 6.02 5.63 87.21 0.49 6.51 16 11 C -0.16 -5.44 5.64 29.04 0.16 -5.28 16 12 C 0.13 3.98 5.67 84.23 0.48 4.45 16 13 N -0.58 -20.90 2.47 -835.76 -2.06 -22.96 16 14 C 0.56 22.66 7.50 86.74 0.65 23.31 16 15 O -0.58 -26.55 16.08 -3.97 -0.06 -26.62 16 16 C -0.17 -6.25 5.63 -20.09 -0.11 -6.37 16 17 C -0.05 -1.60 9.51 22.30 0.21 -1.39 16 18 C -0.11 -3.02 9.99 22.07 0.22 -2.80 16 19 C 0.05 1.61 7.42 23.09 0.17 1.79 16 20 O -0.20 -5.17 10.57 -8.23 -0.09 -5.26 16 21 C 0.02 0.39 11.95 66.85 0.80 1.19 16 22 C -0.22 -6.15 11.15 23.55 0.26 -5.89 16 23 C -0.16 -5.47 6.39 -20.23 -0.13 -5.60 16 24 C -0.09 -3.30 7.22 22.71 0.16 -3.13 16 25 C 0.06 2.10 4.68 87.38 0.41 2.51 16 26 C 0.15 6.50 4.42 86.40 0.38 6.88 16 27 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 29 H 0.04 1.56 8.02 -2.39 -0.02 1.54 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 32 H 0.10 2.46 8.06 -2.38 -0.02 2.44 16 33 H 0.07 2.44 7.19 -2.39 -0.02 2.43 16 34 H 0.15 4.33 7.83 -2.91 -0.02 4.31 16 35 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.26 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.17 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.19 7.24 1.48 -2.95 0.00 7.24 16 39 H 0.10 3.19 4.60 -2.39 -0.01 3.18 16 40 H 0.10 2.67 7.73 -2.38 -0.02 2.65 16 41 H 0.03 1.57 8.02 -2.38 -0.02 1.55 16 42 H 0.07 3.42 4.14 -2.39 -0.01 3.41 16 Total: -1.00 -70.83 331.62 4.69 -66.14 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.06 Total: 20.11 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.35 Total: 1.41 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.60 Total: -103.79 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.15 Total: -31.87 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -70.83 4.69 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981218836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.542 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds