Wall clock time and date at job start Tue Mar 31 2020 10:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.00074 * 2 1 4 4 C 1.54340 * 109.98761 * 238.96492 * 2 1 3 5 5 H 1.08990 * 110.66939 * 337.04474 * 4 2 1 6 6 N 1.46501 * 110.84739 * 100.20107 * 4 2 1 7 7 C 1.36943 * 119.99607 * 200.14168 * 6 4 2 8 8 H 1.07999 * 120.00094 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99753 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00406 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99881 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46927 * 60.00462 * 11 9 7 13 13 H 1.48502 * 109.47008 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47051 * 300.00575 * 11 9 7 15 15 C 1.55158 * 103.01765 * 218.66567 * 4 2 1 16 16 C 1.54900 * 101.58339 * 35.30617 * 15 4 2 17 17 N 1.47023 * 109.88495 * 121.10018 * 2 1 3 18 18 C 1.34773 * 125.64638 * 298.39482 * 17 2 1 19 19 O 1.21630 * 119.99725 * 1.30999 * 18 17 2 20 20 C 1.47160 * 120.00100 * 181.03675 * 18 17 2 21 21 C 1.38400 * 126.88424 * 352.08749 * 20 18 17 22 22 C 1.39672 * 105.36327 * 179.89539 * 21 20 18 23 23 N 1.30866 * 107.85639 * 0.37729 * 22 21 20 24 24 N 1.28442 * 110.92992 * 359.75890 * 23 22 21 25 25 C 1.46504 * 125.19131 * 179.97438 * 24 23 22 26 26 F 1.39904 * 109.46753 * 16.21066 * 25 24 23 27 27 F 1.39900 * 109.46775 * 136.21049 * 25 24 23 28 28 H 1.09000 * 109.46907 * 300.35815 * 1 2 3 29 29 H 1.09002 * 109.47049 * 60.35262 * 1 2 3 30 30 H 1.09001 * 109.47276 * 180.35649 * 1 2 3 31 31 H 0.96991 * 120.00613 * 20.14397 * 6 4 2 32 32 H 0.97000 * 120.00514 * 179.97438 * 10 9 7 33 33 H 1.09004 * 111.00090 * 277.23049 * 15 4 2 34 34 H 1.09000 * 111.00726 * 153.38436 * 15 4 2 35 35 H 1.08996 * 110.37010 * 204.14900 * 16 15 4 36 36 H 1.09003 * 110.45871 * 81.87818 * 16 15 4 37 37 H 1.08008 * 127.32100 * 0.02562 * 21 20 18 38 38 H 1.08000 * 126.07129 * 180.11994 * 22 21 20 39 39 H 1.09002 * 109.47176 * 256.21088 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7478 -1.2428 5 1 1.3066 -1.4404 -1.6226 6 7 2.4636 0.1969 -2.2863 7 6 2.5654 -0.2212 -3.5864 8 1 2.3459 -1.2472 -3.8424 9 6 2.9496 0.6740 -4.5752 10 7 3.2166 1.9245 -4.2633 11 14 3.0878 0.1039 -6.3488 12 1 1.7689 -0.3975 -6.8116 13 1 3.5127 1.2420 -7.2029 14 1 4.0921 -0.9861 -6.4415 15 6 3.2863 -1.5184 -0.6916 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1215 0.6098 2.7190 20 6 2.3893 -1.1574 3.5587 21 6 3.0525 -2.3667 3.4443 22 6 3.4134 -2.7156 4.7477 23 7 2.9793 -1.7766 5.5492 24 7 2.3776 -0.8528 4.8902 25 6 1.7710 0.3446 5.4772 26 9 2.2528 0.5213 6.7787 27 9 2.1004 1.4618 4.7023 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5084 -0.8931 30 1 -0.3634 -1.0276 0.0064 31 1 2.6604 1.1184 -2.0565 32 1 3.4855 2.5500 -4.9542 33 1 4.1669 -0.8768 -0.6581 34 1 3.4806 -2.4156 -1.2793 35 1 3.6655 -2.0413 1.3930 36 1 2.1806 -2.7722 0.7131 37 1 3.2510 -2.9216 2.5391 38 1 3.9511 -3.6047 5.0422 39 1 0.6876 0.2274 5.5036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986323614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:09 Heat of formation + Delta-G solvation = -32.698029 kcal Electronic energy + Delta-G solvation = -26756.007590 eV Core-core repulsion = 22564.930244 eV Total energy + Delta-G solvation = -4191.077346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42586 -48.53503 -43.66087 -41.14196 -38.79181 -36.00744 -34.09519 -33.53034 -32.60328 -31.73441 -30.51795 -27.44355 -26.88141 -25.21226 -24.92524 -22.97457 -22.67129 -21.62658 -20.97679 -19.28983 -19.18445 -18.86359 -18.46486 -17.88002 -17.37143 -16.69094 -16.60059 -16.14022 -15.89816 -15.41697 -15.34420 -15.29817 -14.87674 -14.83039 -14.62745 -14.45023 -14.34961 -13.94009 -13.64148 -13.37139 -13.26838 -13.04774 -12.82827 -12.63342 -12.48950 -12.19665 -12.10471 -11.90869 -11.67816 -11.50404 -11.20506 -10.86286 -10.63776 -10.32010 -9.75599 -9.00302 -7.91563 -5.21567 -0.04720 0.63000 1.49769 1.51807 1.54251 1.60034 1.70256 2.01614 2.45640 2.59604 2.91081 3.15113 3.39007 3.41872 3.70085 3.76119 3.91310 3.95170 4.04869 4.17221 4.32214 4.37551 4.42855 4.52816 4.62252 4.68275 4.78635 4.93551 5.05176 5.13116 5.23424 5.26918 5.29022 5.45947 5.47955 5.57960 6.28124 6.35477 6.72308 6.91082 7.35167 8.07451 8.30405 9.31786 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.003161 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.380431 B = 8854.435743 C = 9365.722945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.137 3.863 3 H 0.047 0.953 4 C 0.170 3.830 5 H 0.076 0.924 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.086 0.914 9 C -0.075 4.075 10 N -0.972 5.972 11 Si 0.972 3.028 12 H -0.277 1.277 13 H -0.303 1.303 14 H -0.275 1.275 15 C -0.148 4.148 16 C 0.087 3.913 17 N -0.589 5.589 18 C 0.591 3.409 19 O -0.566 6.566 20 C -0.036 4.036 21 C -0.168 4.168 22 C 0.025 3.975 23 N -0.289 5.289 24 N -0.344 5.344 25 C 0.502 3.498 26 F -0.174 7.174 27 F -0.178 7.178 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.370 0.630 32 H 0.249 0.751 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.211 0.789 38 H 0.235 0.765 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -13.407 18.814 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.065 0.935 4 C 0.061 3.939 5 H 0.094 0.906 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.104 0.896 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.203 1.203 13 H -0.230 1.230 14 H -0.201 1.201 15 C -0.189 4.189 16 C -0.034 4.034 17 N -0.321 5.321 18 C 0.379 3.621 19 O -0.446 6.446 20 C -0.160 4.160 21 C -0.195 4.195 22 C -0.154 4.154 23 N -0.118 5.118 24 N -0.141 5.141 25 C 0.370 3.630 26 F -0.156 7.156 27 F -0.160 7.160 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.227 0.773 38 H 0.251 0.749 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.693 -12.441 20.061 23.759 hybrid contribution 0.451 0.869 -1.756 2.010 sum -2.242 -11.572 18.305 21.772 Atomic orbital electron populations 1.21948 0.93678 1.02745 1.01906 1.21689 0.95181 0.95405 0.84413 0.93480 1.21463 0.95151 0.91070 0.86234 0.90641 1.42521 1.81131 1.09518 1.03744 1.19593 1.36802 0.95539 0.84773 0.89608 1.25563 1.03224 0.95840 1.02129 1.69826 1.54636 1.04393 1.33433 0.85229 0.78109 0.76515 0.79996 1.20318 1.22973 1.20057 1.23419 0.98892 1.01558 0.95032 1.23154 0.96461 0.88116 0.95652 1.48126 1.51563 1.29018 1.03401 1.16734 0.80673 0.83313 0.81360 1.90825 1.41098 1.29006 1.83634 1.21385 1.09735 1.00193 0.84720 1.23455 1.00082 0.94565 1.01429 1.24566 1.01594 0.99696 0.89501 1.73269 1.11830 0.99922 1.26743 1.47062 1.43883 1.18314 1.04847 1.21916 0.97005 0.72582 0.71544 1.93106 1.90859 1.94620 1.36979 1.93186 1.94490 1.52667 1.75628 0.92627 0.92170 0.90861 0.79808 0.94199 0.92759 0.88537 0.87310 0.87288 0.77292 0.74873 0.79394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.11 71.98 0.66 -3.78 16 2 C 0.14 4.54 3.22 45.35 0.15 4.69 16 3 H 0.05 1.88 7.69 -2.39 -0.02 1.86 16 4 C 0.17 5.91 3.12 46.19 0.14 6.06 16 5 H 0.08 2.51 7.83 -2.39 -0.02 2.49 16 6 N -0.73 -34.36 5.25 -317.31 -1.67 -36.02 16 7 C -0.24 -12.13 9.98 84.03 0.84 -11.29 16 8 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.08 -4.15 5.50 84.86 0.47 -3.68 16 10 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 11 Si 0.97 44.23 29.55 68.60 2.03 46.25 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C -0.15 -4.09 6.77 31.98 0.22 -3.87 16 16 C 0.09 1.71 5.30 86.85 0.46 2.17 16 17 N -0.59 -16.09 3.06 -792.20 -2.43 -18.52 16 18 C 0.59 17.23 7.48 86.59 0.65 17.87 16 19 O -0.57 -19.73 13.00 -4.12 -0.05 -19.78 16 20 C -0.04 -0.84 6.78 40.78 0.28 -0.57 16 21 C -0.17 -2.66 9.29 22.66 0.21 -2.45 16 22 C 0.03 0.38 12.03 85.18 1.02 1.40 16 23 N -0.29 -6.31 11.54 -57.14 -0.66 -6.97 16 24 N -0.34 -8.23 3.72 -351.28 -1.31 -9.54 16 25 C 0.50 11.26 5.92 127.77 0.76 12.01 16 26 F -0.17 -3.96 17.13 44.97 0.77 -3.19 16 27 F -0.18 -5.19 14.81 44.97 0.67 -4.52 16 28 H 0.05 1.79 6.84 -2.39 -0.02 1.77 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.37 19.56 7.51 -92.71 -0.70 18.86 16 32 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.11 1.63 5.27 -2.39 -0.01 1.62 16 36 H 0.11 1.46 8.06 -2.39 -0.02 1.44 16 37 H 0.21 1.94 4.91 -2.91 -0.01 1.92 16 38 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.19 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -71.73 329.96 3.89 -67.84 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.41 Total: 24.01 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.84 Total: 18.56 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.78 Total: -129.17 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 1.44 Total: -7.71 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.73 3.89 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986323614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.144 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds