Wall clock time and date at job start Tue Mar 31 2020 10:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34781 * 125.64764 * 298.32542 * 17 2 1 19 19 O 1.21572 * 119.99818 * 359.97438 * 18 17 2 20 20 C 1.47708 * 120.00063 * 180.02562 * 18 17 2 21 21 C 1.41505 * 126.51821 * 179.70966 * 20 18 17 22 22 C 1.35369 * 105.50068 * 179.89701 * 21 20 18 23 23 C 1.50702 * 126.38191 * 180.08288 * 22 21 20 24 24 F 1.39898 * 109.47201 * 300.30119 * 23 22 21 25 25 F 1.39903 * 109.46693 * 60.30184 * 23 22 21 26 26 N 1.35033 * 107.23052 * 0.35996 * 22 21 20 27 27 H 0.96999 * 124.88232 * 179.76411 * 26 22 21 28 28 N 1.28465 * 110.23219 * 359.75865 * 26 22 21 29 29 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 30 30 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 31 31 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 32 32 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 33 33 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 34 34 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 35 35 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 36 36 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 37 37 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 38 38 H 1.07995 * 127.24582 * 0.02562 * 21 20 18 39 39 H 1.09000 * 109.46774 * 180.29558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 2.8296 0.3378 -5.8520 11 14 3.3393 2.4476 -4.1289 12 1 4.8037 2.4878 -3.8857 13 1 2.9959 3.3737 -5.2377 14 1 2.6214 2.8626 -2.8969 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8086 -0.3648 2.4652 19 8 1.1443 0.6211 2.7195 20 6 2.3739 -1.1774 3.5614 21 6 2.2339 -0.9343 4.9484 22 6 2.9129 -1.9324 5.5610 23 6 3.0665 -2.1280 7.0474 24 9 3.6948 -1.0082 7.6027 25 9 1.8046 -2.2911 7.6290 26 7 3.4322 -2.7164 4.5919 27 1 3.9712 -3.5076 4.7479 28 7 3.1095 -2.2638 3.4338 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3633 0.5295 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 2.7187 1.1017 -2.0481 33 1 3.0913 0.9659 -6.5433 34 1 3.4851 -2.4092 -1.2832 35 1 4.1654 -0.8679 -0.6618 36 1 3.6717 -2.0358 1.3893 37 1 2.1886 -2.7725 0.7089 38 1 1.6965 -0.1244 5.4190 39 1 3.6711 -3.0150 7.2364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986931310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:48 Heat of formation + Delta-G solvation = -31.785516 kcal Electronic energy + Delta-G solvation = -25974.767449 eV Core-core repulsion = 21783.729673 eV Total energy + Delta-G solvation = -4191.037776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.58007 -47.58690 -43.17889 -39.87159 -37.47580 -34.30848 -32.80650 -32.21350 -31.51766 -30.93106 -29.56873 -26.73686 -25.33642 -24.76862 -22.67630 -22.01103 -21.83039 -20.27980 -19.51153 -18.60330 -17.88982 -17.76718 -17.60414 -17.23739 -16.32445 -15.86808 -15.52956 -14.99846 -14.54678 -14.41466 -14.24443 -14.05601 -13.93248 -13.75574 -13.44059 -13.37193 -12.85958 -12.71720 -12.29478 -12.09780 -11.97232 -11.88349 -11.44380 -11.20264 -11.11607 -10.85529 -10.62826 -10.34620 -10.09966 -9.97506 -9.91363 -9.77859 -9.63097 -8.96639 -8.48700 -7.34404 -5.82158 -3.19264 1.08145 1.51211 2.07205 2.84918 3.23743 3.29185 3.36366 3.40266 3.43236 3.44849 3.83889 4.07526 4.34325 4.55410 4.68862 4.93212 4.99585 5.09471 5.25057 5.27827 5.47928 5.56129 5.61779 5.72971 5.78981 5.85185 5.99806 6.01953 6.23651 6.31830 6.37228 6.53881 6.54614 6.63137 6.80945 7.26108 7.62209 7.91986 8.18734 8.36311 9.13106 9.85743 10.04217 11.35585 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.030114 B = 0.002769 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.578524 B =10107.923161 C =10238.204159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.077 0.923 4 C 0.182 3.818 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.931 5.931 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.156 4.156 16 C 0.100 3.900 17 N -0.594 5.594 18 C 0.611 3.389 19 O -0.532 6.532 20 C 0.000 4.000 21 C -0.120 4.120 22 C -0.082 4.082 23 C 0.354 3.646 24 F -0.186 7.186 25 F -0.186 7.186 26 N -0.363 5.363 27 H 0.449 0.551 28 N -0.225 5.225 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.171 0.829 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -9.398 26.523 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.095 0.905 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.197 4.197 16 C -0.023 4.023 17 N -0.327 5.327 18 C 0.397 3.603 19 O -0.407 6.407 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.208 4.208 23 C 0.298 3.702 24 F -0.167 7.167 25 F -0.167 7.167 26 N -0.079 5.079 27 H 0.294 0.706 28 N -0.062 5.062 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.188 0.812 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.021 -9.582 25.681 27.485 hybrid contribution 0.425 1.324 0.943 1.680 sum 2.446 -8.259 26.624 27.983 Atomic orbital electron populations 1.22068 0.94457 1.02019 1.02882 1.22028 0.94866 0.96722 0.84378 0.90526 1.21234 0.94015 0.91282 0.86438 0.90483 1.42710 1.80869 1.11065 1.03370 1.19034 1.38937 0.98940 0.80760 0.88979 1.24659 1.01307 0.97748 0.95049 1.69692 1.53963 1.35248 0.98884 0.86591 0.78675 0.86024 0.77512 1.21028 1.21636 1.20155 1.23552 1.00807 1.01945 0.93417 1.22550 0.95362 0.87697 0.96662 1.48366 1.51300 1.28660 1.04367 1.16400 0.80275 0.83423 0.80228 1.90801 1.40309 1.26656 1.82970 1.22067 1.03314 0.96061 0.94600 1.21652 1.01479 0.99763 0.91956 1.21710 1.07751 0.98575 0.92715 1.19258 0.79578 0.88170 0.83148 1.93081 1.81879 1.55687 1.86072 1.93080 1.42869 1.95743 1.85038 1.43262 1.39229 1.23320 1.02125 0.70589 1.73818 1.14345 1.12154 1.05861 0.92742 0.91830 0.90926 0.80358 0.92946 0.90054 0.90840 0.89669 0.91552 0.81175 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.09 37.16 0.34 -2.19 16 2 C 0.12 2.11 3.21 -66.95 -0.21 1.90 16 3 H 0.08 1.43 7.71 -51.93 -0.40 1.02 16 4 C 0.18 3.34 3.14 -66.09 -0.21 3.14 16 5 H 0.08 1.44 7.80 -51.93 -0.40 1.04 16 6 N -0.74 -16.82 5.03 -51.65 -0.26 -17.08 16 7 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 11 Si 0.88 21.82 27.74 -169.99 -4.72 17.11 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.47 6.51 56.52 0.37 -6.10 16 15 C -0.16 -2.48 6.77 -24.59 -0.17 -2.64 16 16 C 0.10 1.36 6.16 -2.53 -0.02 1.34 16 17 N -0.59 -9.23 3.06 -164.17 -0.50 -9.73 16 18 C 0.61 9.74 7.65 -12.39 -0.09 9.65 16 19 O -0.53 -9.86 15.98 5.30 0.08 -9.77 16 20 C 0.00 -0.01 6.97 -82.76 -0.58 -0.58 16 21 C -0.12 -1.32 10.73 -39.36 -0.42 -1.74 16 22 C -0.08 -0.63 6.66 -82.21 -0.55 -1.18 16 23 C 0.35 1.88 5.79 36.01 0.21 2.08 16 24 F -0.19 -1.41 17.32 2.25 0.04 -1.37 16 25 F -0.19 -1.39 17.32 2.25 0.04 -1.35 16 26 N -0.36 -2.44 6.83 33.50 0.23 -2.21 16 27 H 0.45 0.99 8.96 -190.44 -1.71 -0.71 16 28 N -0.22 -2.37 9.35 33.42 0.31 -2.06 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.06 6.91 -51.92 -0.36 0.70 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.36 8.30 5.42 -40.82 -0.22 8.08 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.06 6.20 -51.93 -0.32 0.74 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -34.25 335.70 -6.86 -41.11 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.96 Total: 5.05 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.95 Total: 3.08 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.55 Total: -58.91 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.25 -6.86 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986931310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.323 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds