Wall clock time and date at job start Tue Mar 31 2020 10:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34781 * 125.64764 * 298.32542 * 17 2 1 19 19 O 1.21572 * 119.99818 * 359.97438 * 18 17 2 20 20 C 1.47708 * 120.00063 * 180.02562 * 18 17 2 21 21 C 1.41505 * 126.51821 * 179.70966 * 20 18 17 22 22 C 1.35369 * 105.50068 * 179.89701 * 21 20 18 23 23 C 1.50702 * 126.38191 * 180.08288 * 22 21 20 24 24 F 1.39898 * 109.47201 * 300.30119 * 23 22 21 25 25 F 1.39903 * 109.46693 * 60.30184 * 23 22 21 26 26 N 1.35033 * 107.23052 * 0.35996 * 22 21 20 27 27 H 0.96999 * 124.88232 * 179.76411 * 26 22 21 28 28 N 1.28465 * 110.23219 * 359.75865 * 26 22 21 29 29 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 30 30 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 31 31 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 32 32 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 33 33 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 34 34 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 35 35 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 36 36 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 37 37 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 38 38 H 1.07995 * 127.24582 * 0.02562 * 21 20 18 39 39 H 1.09000 * 109.46774 * 180.29558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 2.8296 0.3378 -5.8520 11 14 3.3393 2.4476 -4.1289 12 1 4.8037 2.4878 -3.8857 13 1 2.9959 3.3737 -5.2377 14 1 2.6214 2.8626 -2.8969 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8086 -0.3648 2.4652 19 8 1.1443 0.6211 2.7195 20 6 2.3739 -1.1774 3.5614 21 6 2.2339 -0.9343 4.9484 22 6 2.9129 -1.9324 5.5610 23 6 3.0665 -2.1280 7.0474 24 9 3.6948 -1.0082 7.6027 25 9 1.8046 -2.2911 7.6290 26 7 3.4322 -2.7164 4.5919 27 1 3.9712 -3.5076 4.7479 28 7 3.1095 -2.2638 3.4338 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3633 0.5295 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 2.7187 1.1017 -2.0481 33 1 3.0913 0.9659 -6.5433 34 1 3.4851 -2.4092 -1.2832 35 1 4.1654 -0.8679 -0.6618 36 1 3.6717 -2.0358 1.3893 37 1 2.1886 -2.7725 0.7089 38 1 1.6965 -0.1244 5.4190 39 1 3.6711 -3.0150 7.2364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986931310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:47 Heat of formation + Delta-G solvation = -56.373142 kcal Electronic energy + Delta-G solvation = -25975.833649 eV Core-core repulsion = 21783.729673 eV Total energy + Delta-G solvation = -4192.103976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.05873 -48.08227 -43.93726 -41.15220 -38.85081 -36.06487 -33.95132 -33.17465 -32.92637 -32.20774 -31.12634 -27.29555 -26.92772 -25.84892 -24.43450 -23.16386 -22.56133 -21.75985 -20.42856 -19.64871 -19.39923 -18.39113 -18.29130 -18.20459 -17.53700 -16.83948 -16.48674 -16.37627 -16.07444 -15.74604 -15.18627 -14.93370 -14.91257 -14.75780 -14.63520 -14.43549 -14.16862 -13.99585 -13.77509 -13.54404 -13.32389 -13.07201 -12.72267 -12.60821 -12.42080 -12.28984 -12.08920 -11.95720 -11.82074 -11.54408 -11.27832 -10.94588 -10.71765 -10.53864 -9.74437 -9.32884 -8.01872 -5.35942 0.27962 0.64190 1.39613 1.40232 1.45302 1.47509 1.80177 2.17403 2.48133 2.67518 3.09677 3.11709 3.27971 3.43858 3.51900 3.63544 3.84363 3.90532 4.06129 4.12626 4.17958 4.32310 4.36566 4.45017 4.49480 4.65551 4.77798 4.90299 4.99631 5.01190 5.20907 5.21046 5.30755 5.39237 5.77187 5.81667 6.21616 6.38669 6.53970 6.98153 7.05916 7.80479 7.98730 9.18997 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.030114 B = 0.002769 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.578524 B =10107.923161 C =10238.204159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.060 0.940 4 C 0.175 3.825 5 H 0.075 0.925 6 N -0.743 5.743 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.057 4.057 10 N -0.980 5.980 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.258 1.258 15 C -0.148 4.148 16 C 0.112 3.888 17 N -0.596 5.596 18 C 0.608 3.392 19 O -0.568 6.568 20 C -0.029 4.029 21 C -0.149 4.149 22 C -0.060 4.060 23 C 0.354 3.646 24 F -0.200 7.200 25 F -0.199 7.199 26 N -0.331 5.331 27 H 0.472 0.528 28 N -0.226 5.226 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.364 0.636 33 H 0.258 0.742 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -10.910 29.453 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 H 0.078 0.922 4 C 0.066 3.934 5 H 0.093 0.907 6 N -0.385 5.385 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.249 4.249 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.206 1.206 13 H -0.224 1.224 14 H -0.183 1.183 15 C -0.189 4.189 16 C -0.010 4.010 17 N -0.328 5.328 18 C 0.396 3.604 19 O -0.446 6.446 20 C -0.187 4.187 21 C -0.177 4.177 22 C -0.187 4.187 23 C 0.299 3.701 24 F -0.181 7.181 25 F -0.180 7.180 26 N -0.051 5.051 27 H 0.323 0.677 28 N -0.065 5.065 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.197 0.803 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.180 0.820 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.222 -11.144 28.677 30.935 hybrid contribution 0.048 1.652 0.141 1.659 sum 3.270 -9.492 28.818 30.517 Atomic orbital electron populations 1.21983 0.93860 1.02599 1.02187 1.21778 0.95287 0.95827 0.84659 0.92237 1.21398 0.95250 0.90832 0.85935 0.90684 1.42695 1.81193 1.11912 1.02729 1.18997 1.36330 0.97624 0.82535 0.91475 1.25369 1.02708 1.01857 0.94979 1.69850 1.56459 1.36636 1.00077 0.85556 0.78496 0.81110 0.77502 1.20554 1.22378 1.18259 1.23401 0.98979 1.01551 0.94951 1.22574 0.96001 0.87384 0.95057 1.48380 1.51476 1.28989 1.03979 1.16810 0.79685 0.83246 0.80684 1.90768 1.41959 1.28342 1.83559 1.21618 1.05532 0.97328 0.94195 1.21745 1.03133 1.01206 0.91620 1.21976 1.05583 0.96957 0.94173 1.19890 0.79666 0.89607 0.80967 1.93058 1.82021 1.56951 1.86046 1.93059 1.44159 1.95784 1.85012 1.43305 1.37666 1.23204 1.00927 0.67740 1.73689 1.14027 1.11392 1.07408 0.91519 0.92496 0.91563 0.80290 0.93349 0.89330 0.91683 0.87959 0.89760 0.81977 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.09 71.98 0.65 -4.11 16 2 C 0.13 4.36 3.21 45.34 0.15 4.50 16 3 H 0.06 2.22 7.71 -2.39 -0.02 2.21 16 4 C 0.18 6.34 3.14 46.18 0.15 6.49 16 5 H 0.08 2.76 7.80 -2.39 -0.02 2.75 16 6 N -0.74 -33.62 5.03 -317.31 -1.60 -35.21 16 7 C -0.22 -12.26 10.44 84.04 0.88 -11.38 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 9 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 10 N -0.98 -61.68 13.97 21.65 0.30 -61.38 16 11 Si 0.95 45.46 27.74 68.60 1.90 47.36 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 14 H -0.26 -11.47 6.51 99.48 0.65 -10.82 16 15 C -0.15 -4.48 6.77 31.98 0.22 -4.26 16 16 C 0.11 2.77 6.16 86.85 0.53 3.31 16 17 N -0.60 -17.91 3.06 -791.56 -2.43 -20.34 16 18 C 0.61 19.14 7.65 86.75 0.66 19.81 16 19 O -0.57 -21.44 15.98 -3.94 -0.06 -21.51 16 20 C -0.03 -0.71 6.97 42.46 0.30 -0.41 16 21 C -0.15 -3.09 10.73 22.41 0.24 -2.85 16 22 C -0.06 -0.73 6.66 41.40 0.28 -0.45 16 23 C 0.35 2.39 5.79 71.24 0.41 2.80 16 24 F -0.20 -2.47 17.32 44.97 0.78 -1.69 16 25 F -0.20 -2.41 17.32 44.97 0.78 -1.63 16 26 N -0.33 -3.12 6.83 -47.93 -0.33 -3.44 16 27 H 0.47 -0.35 8.96 -219.99 -1.97 -2.32 16 28 N -0.23 -4.10 9.35 -48.17 -0.45 -4.55 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.90 6.91 -2.38 -0.02 1.89 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.36 16.35 5.42 -92.71 -0.50 15.85 16 33 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.10 2.24 6.20 -2.38 -0.01 2.23 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.18 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: -1.00 -76.90 335.70 2.41 -74.49 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -1.42 Total: 17.31 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.93 Total: 10.60 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -4.50 Total: -124.92 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.56 Total: -3.33 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -76.90 2.41 -74.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986931310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.116 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds