Wall clock time and date at job start Tue Mar 31 2020 10:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87377 * 2 1 4 4 C 1.54320 * 109.88520 * 238.97955 * 2 1 3 5 5 H 1.09007 * 110.71693 * 336.60512 * 4 2 1 6 6 N 1.46506 * 110.72004 * 99.69486 * 4 2 1 7 7 C 1.36928 * 120.00045 * 205.00065 * 6 4 2 8 8 H 1.08007 * 120.00339 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99703 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00478 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99648 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47148 * 60.00357 * 11 9 7 13 13 H 1.48500 * 109.46944 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47291 * 299.99891 * 11 9 7 15 15 C 1.55158 * 102.94629 * 218.24031 * 4 2 1 16 16 C 1.54911 * 101.57855 * 35.49907 * 15 4 2 17 17 N 1.47024 * 110.00437 * 121.09441 * 2 1 3 18 18 C 1.34773 * 125.65254 * 298.38188 * 17 2 1 19 19 O 1.21602 * 119.99921 * 354.14753 * 18 17 2 20 20 C 1.47427 * 120.00229 * 174.14353 * 18 17 2 21 21 C 1.41299 * 126.41070 * 352.83683 * 20 18 17 22 22 N 1.30452 * 108.01969 * 179.87704 * 21 20 18 23 23 N 1.39932 * 108.89773 * 0.38523 * 22 21 20 24 24 C 1.46507 * 125.75762 * 179.77253 * 23 22 21 25 25 F 1.39899 * 109.46810 * 29.97464 * 24 23 22 26 26 F 1.39902 * 109.47102 * 149.97781 * 24 23 22 27 27 C 1.34268 * 108.49449 * 359.75143 * 23 22 21 28 28 H 1.09003 * 109.47438 * 180.69884 * 1 2 3 29 29 H 1.08998 * 109.47501 * 300.70387 * 1 2 3 30 30 H 1.09004 * 109.46835 * 60.70342 * 1 2 3 31 31 H 0.97001 * 119.99335 * 25.00752 * 6 4 2 32 32 H 0.96996 * 120.00639 * 179.97438 * 10 9 7 33 33 H 1.08990 * 111.00533 * 153.57701 * 15 4 2 34 34 H 1.09000 * 110.99792 * 277.43397 * 15 4 2 35 35 H 1.09005 * 110.36307 * 81.83342 * 16 15 4 36 36 H 1.09001 * 110.36842 * 204.04301 * 16 15 4 37 37 H 1.07992 * 125.99335 * 0.02562 * 21 20 18 38 38 H 1.09000 * 109.46613 * 269.97527 * 24 23 22 39 39 H 1.07996 * 126.29255 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2436 5 1 1.3061 -1.4457 -1.6185 6 7 2.4482 0.1989 -2.2902 7 6 2.4492 -0.1924 -3.6023 8 1 2.1596 -1.1990 -3.8659 9 6 2.8223 0.7046 -4.5938 10 7 3.1748 1.9313 -4.2728 11 14 2.8243 0.1704 -6.3839 12 1 1.4551 -0.2493 -6.7767 13 1 3.2580 1.3048 -7.2385 14 1 3.7608 -0.9685 -6.5596 15 6 3.2900 -1.5102 -0.6952 16 6 2.8194 -1.8770 0.7344 17 7 2.0330 -0.7135 1.1830 18 6 1.8125 -0.3616 2.4652 19 8 1.2379 0.6794 2.7198 20 6 2.2680 -1.2388 3.5591 21 6 2.8170 -2.5336 3.4226 22 7 3.0969 -2.9811 4.6156 23 7 2.7375 -2.0121 5.5589 24 6 2.8874 -2.1340 7.0112 25 9 3.9840 -2.9535 7.2995 26 9 3.0934 -0.8667 7.5668 27 6 2.2324 -0.9514 4.9088 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8836 30 1 -0.3633 0.5029 -0.8963 31 1 2.7080 1.1030 -2.0535 32 1 3.4359 2.5580 -4.9656 33 1 3.4887 -2.4062 -1.2831 34 1 4.1664 -0.8629 -0.6640 35 1 2.1954 -2.7704 0.7108 36 1 3.6777 -2.0318 1.3883 37 1 2.9790 -3.0596 2.4934 38 1 1.9841 -2.5737 7.4340 39 1 1.8660 -0.0407 5.3590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987269804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:24 Heat of formation + Delta-G solvation = -43.440187 kcal Electronic energy + Delta-G solvation = -25935.282925 eV Core-core repulsion = 21743.739765 eV Total energy + Delta-G solvation = -4191.543161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.38438 -48.51273 -42.57345 -40.87685 -38.63937 -35.92971 -34.25062 -33.18469 -32.30359 -31.57118 -30.55160 -27.43424 -26.85877 -24.90701 -24.74241 -22.72000 -22.47894 -21.43239 -20.55820 -19.46008 -19.13328 -19.04821 -18.49949 -17.56848 -17.15780 -16.57168 -16.45507 -16.06456 -15.78673 -15.35616 -15.28029 -15.26636 -14.87466 -14.77207 -14.57870 -14.41649 -14.07539 -14.02162 -13.56879 -13.36530 -13.18405 -13.03649 -12.83248 -12.56175 -12.44383 -12.33999 -12.17707 -12.07598 -11.68345 -11.50099 -11.01895 -10.96037 -10.83325 -10.12188 -9.58795 -8.99411 -7.90947 -5.20716 0.19623 0.67199 0.98895 1.51602 1.54230 1.59990 1.94241 2.32550 2.52910 2.60176 2.82995 3.39992 3.49692 3.54888 3.56665 3.76221 3.81372 3.89893 4.07980 4.19634 4.23047 4.38192 4.43867 4.45252 4.55909 4.72604 4.73837 4.95331 5.09628 5.14529 5.26429 5.28504 5.30006 5.40653 5.50870 5.58276 6.21598 6.29256 6.59179 7.16594 7.35728 8.08544 8.31846 9.32479 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.002614 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.447650 B =10707.381766 C =11059.406802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.134 3.866 3 H 0.043 0.957 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.729 5.729 7 C -0.235 4.235 8 H 0.085 0.915 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.277 1.277 13 H -0.302 1.302 14 H -0.275 1.275 15 C -0.149 4.149 16 C 0.095 3.905 17 N -0.604 5.604 18 C 0.604 3.396 19 O -0.588 6.588 20 C -0.291 4.291 21 C 0.094 3.906 22 N -0.295 5.295 23 N -0.431 5.431 24 C 0.506 3.494 25 F -0.184 7.184 26 F -0.183 7.183 27 C 0.152 3.848 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.370 0.630 32 H 0.249 0.751 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.229 0.771 38 H 0.212 0.788 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -13.428 23.444 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.061 0.939 4 C 0.061 3.939 5 H 0.095 0.905 6 N -0.368 5.368 7 C -0.367 4.367 8 H 0.103 0.897 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.203 1.203 13 H -0.229 1.229 14 H -0.201 1.201 15 C -0.190 4.190 16 C -0.027 4.027 17 N -0.336 5.336 18 C 0.395 3.605 19 O -0.470 6.470 20 C -0.305 4.305 21 C -0.095 4.095 22 N -0.113 5.113 23 N -0.220 5.220 24 C 0.375 3.625 25 F -0.165 7.165 26 F -0.165 7.165 27 C 0.003 3.997 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.244 0.756 38 H 0.228 0.772 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.481 -13.964 24.394 28.217 hybrid contribution 0.207 1.609 -1.558 2.249 sum -2.274 -12.355 22.835 26.063 Atomic orbital electron populations 1.21924 0.94052 1.02571 1.01576 1.21655 0.94923 0.95466 0.85042 0.93870 1.21451 0.95077 0.91039 0.86317 0.90521 1.42530 1.79924 1.11930 1.02416 1.19608 1.36208 0.96950 0.83942 0.89702 1.25573 1.03086 0.96067 1.02156 1.69825 1.53595 1.05747 1.33127 0.85220 0.78035 0.76528 0.80014 1.20324 1.22879 1.20123 1.23416 0.98974 1.01474 0.95144 1.22880 0.95796 0.88634 0.95349 1.48274 1.52018 1.29248 1.04036 1.17143 0.78147 0.84177 0.81045 1.90747 1.45826 1.26500 1.83881 1.20211 1.18753 0.98589 0.92957 1.25216 0.93775 0.93089 0.97436 1.77310 1.23233 1.12979 0.97757 1.50100 1.49648 1.14187 1.08028 1.22242 0.90528 0.75399 0.74365 1.93116 1.58820 1.72396 1.92145 1.93149 1.96291 1.43238 1.83775 1.23193 0.92578 0.92376 0.91548 0.90916 0.93034 0.92330 0.79781 0.94179 0.88770 0.92837 0.87703 0.88405 0.75555 0.77177 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.11 71.98 0.66 -3.97 16 2 C 0.13 4.64 3.17 45.34 0.14 4.78 16 3 H 0.04 1.80 7.72 -2.39 -0.02 1.78 16 4 C 0.17 6.18 3.13 46.18 0.14 6.33 16 5 H 0.08 2.66 7.80 -2.38 -0.02 2.64 16 6 N -0.73 -35.21 5.23 -317.31 -1.66 -36.87 16 7 C -0.24 -12.38 9.96 84.04 0.84 -11.54 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 10 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 11 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 15 C -0.15 -4.36 6.78 31.99 0.22 -4.15 16 16 C 0.10 2.04 5.09 86.85 0.44 2.48 16 17 N -0.60 -17.35 3.07 -791.88 -2.43 -19.78 16 18 C 0.60 18.06 7.59 86.66 0.66 18.72 16 19 O -0.59 -21.82 16.19 -4.04 -0.07 -21.89 16 20 C -0.29 -6.57 6.04 -20.15 -0.12 -6.69 16 21 C 0.09 1.73 10.27 85.65 0.88 2.61 16 22 N -0.29 -5.77 12.32 -56.27 -0.69 -6.46 16 23 N -0.43 -7.03 3.94 -363.00 -1.43 -8.46 16 24 C 0.51 4.84 6.62 127.77 0.85 5.68 16 25 F -0.18 -2.66 17.35 44.97 0.78 -1.88 16 26 F -0.18 -2.11 17.00 44.97 0.76 -1.34 16 27 C 0.15 2.79 10.85 84.27 0.91 3.70 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.74 7.10 -2.39 -0.02 1.72 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.37 19.98 7.56 -92.71 -0.70 19.28 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.58 7.71 -2.38 -0.02 1.56 16 36 H 0.10 1.70 5.96 -2.39 -0.01 1.69 16 37 H 0.23 2.92 4.88 -2.91 -0.01 2.91 16 38 H 0.21 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.21 336.78 4.06 -70.15 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.40 Total: 24.28 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.08 Total: 14.14 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.93 Total: -130.38 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.54 Total: -3.22 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.21 4.06 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987269804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds