Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00070 * 2 1 4 4 C 1.54321 * 109.88405 * 121.09619 * 2 1 3 5 5 H 1.08997 * 110.72072 * 259.97416 * 4 2 1 6 6 N 1.46503 * 110.71998 * 23.24647 * 4 2 1 7 7 C 1.36939 * 120.00248 * 205.00364 * 6 4 2 8 8 H 1.08001 * 119.99437 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00221 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00000 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00168 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47004 * 59.99697 * 11 9 7 13 13 H 1.48496 * 109.47056 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46937 * 300.00475 * 11 9 7 15 15 C 1.55151 * 102.94730 * 141.60597 * 4 2 1 16 16 C 1.55136 * 101.48697 * 324.33870 * 15 4 2 17 17 N 1.47030 * 109.88016 * 238.90343 * 2 1 3 18 18 C 1.34771 * 125.64639 * 61.60834 * 17 2 1 19 19 O 1.21605 * 120.00372 * 5.88794 * 18 17 2 20 20 C 1.47432 * 119.99411 * 185.88971 * 18 17 2 21 21 C 1.41285 * 126.42043 * 6.90296 * 20 18 17 22 22 N 1.30443 * 108.02682 * 179.97438 * 21 20 18 23 23 N 1.39935 * 108.89919 * 0.02562 * 22 21 20 24 24 C 1.46493 * 125.75767 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.46916 * 120.02442 * 24 23 22 26 26 F 1.39897 * 109.47216 * 240.02536 * 24 23 22 27 27 C 1.34267 * 108.48833 * 0.02562 * 23 22 21 28 28 H 1.08997 * 109.47598 * 179.64281 * 1 2 3 29 29 H 1.09000 * 109.47344 * 299.64567 * 1 2 3 30 30 H 1.09001 * 109.47106 * 59.64270 * 1 2 3 31 31 H 0.97004 * 120.00031 * 24.99832 * 6 4 2 32 32 H 0.97004 * 120.00458 * 179.97438 * 10 9 7 33 33 H 1.09005 * 111.00408 * 82.56786 * 15 4 2 34 34 H 1.08992 * 111.01253 * 206.38668 * 15 4 2 35 35 H 1.09000 * 110.48942 * 278.45120 * 16 15 4 36 36 H 1.08995 * 110.34507 * 156.05700 * 16 15 4 37 37 H 1.07999 * 125.98638 * 359.97438 * 21 20 18 38 38 H 1.09006 * 109.47022 * 0.02667 * 24 23 22 39 39 H 1.07997 * 126.28601 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3529 -0.0460 2.0200 6 7 1.0471 -1.6855 1.7474 7 6 1.0606 -2.0618 3.0641 8 1 1.8143 -1.6687 3.7302 9 6 0.1055 -2.9482 3.5424 10 7 -0.8134 -3.4268 2.7306 11 14 0.1242 -3.4619 5.3383 12 1 -0.0374 -2.2620 6.1981 13 1 -0.9909 -4.4086 5.5940 14 1 1.4164 -4.1239 5.6502 15 6 3.2875 -1.5143 0.6924 16 6 2.8098 -1.8826 -0.7369 17 7 2.0299 -0.7141 -1.1840 18 6 1.8073 -0.3621 -2.4657 19 8 1.2337 0.6798 -2.7193 20 6 2.2591 -1.2402 -3.5604 21 6 2.8111 -2.5337 -3.4246 22 7 3.0832 -2.9838 -4.6184 23 7 2.7241 -2.0140 -5.5611 24 6 2.8714 -2.1362 -7.0135 25 9 1.6159 -2.0252 -7.6205 26 9 3.7087 -1.1192 -7.4845 27 6 2.2228 -0.9522 -4.9100 28 1 -0.3634 -1.0276 -0.0064 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 0.3703 -2.0388 1.1490 32 1 -1.4806 -4.0465 3.0647 33 1 4.1653 -0.8689 0.6603 34 1 3.4855 -2.4107 1.2800 35 1 2.1800 -2.7718 -0.7114 36 1 3.6654 -2.0413 -1.3932 37 1 2.9785 -3.0579 -2.4954 38 1 3.3069 -3.1060 -7.2542 39 1 1.8570 -0.0410 -5.3596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987269808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = -15.424547 kcal Electronic energy + Delta-G solvation = -26301.221696 eV Core-core repulsion = 22110.893384 eV Total energy + Delta-G solvation = -4190.328311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.80670 -47.90325 -41.65997 -39.64859 -37.32317 -34.12179 -33.16731 -31.59944 -30.87849 -30.53985 -28.83979 -26.62998 -25.35054 -23.69626 -23.45858 -21.83199 -21.56486 -19.85319 -19.18255 -18.28843 -18.26854 -17.99234 -17.40970 -16.23559 -16.06927 -15.54834 -15.18452 -14.80599 -14.65598 -14.45695 -14.22853 -13.95813 -13.86864 -13.69774 -13.34428 -13.19238 -12.81447 -12.60358 -12.57051 -12.18823 -11.74375 -11.49527 -11.25968 -10.97881 -10.93493 -10.74953 -10.63033 -10.27788 -10.23333 -10.07004 -9.65526 -9.59983 -9.17330 -8.96791 -8.29700 -7.04757 -5.83189 -3.12909 1.09123 1.32231 1.93141 3.00963 3.22032 3.40402 3.45584 3.46372 3.48255 3.66209 4.12685 4.28415 4.48732 4.53503 4.76956 5.01514 5.04135 5.18303 5.35046 5.45027 5.57941 5.63491 5.73524 5.82304 5.96690 5.97929 6.10034 6.16413 6.32636 6.41755 6.51130 6.61497 6.72106 6.87498 7.02418 7.05312 7.64681 7.83538 8.34896 8.42429 9.46730 10.01681 10.36699 11.38826 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.002954 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.582113 B = 9477.238775 C = 9747.189881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 H 0.072 0.928 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.095 3.905 17 N -0.601 5.601 18 C 0.605 3.395 19 O -0.551 6.551 20 C -0.265 4.265 21 C 0.093 3.907 22 N -0.281 5.281 23 N -0.430 5.430 24 C 0.504 3.496 25 F -0.179 7.179 26 F -0.180 7.180 27 C 0.138 3.862 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.388 0.612 32 H 0.257 0.743 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.211 0.789 38 H 0.169 0.831 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 2.198 -17.634 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 H 0.090 0.910 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.213 1.213 15 C -0.201 4.201 16 C -0.028 4.028 17 N -0.334 5.334 18 C 0.394 3.606 19 O -0.430 6.430 20 C -0.279 4.279 21 C -0.097 4.097 22 N -0.099 5.099 23 N -0.219 5.219 24 C 0.369 3.631 25 F -0.160 7.160 26 F -0.161 7.161 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.186 0.814 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.936 1.770 -18.533 21.103 hybrid contribution -0.623 0.234 1.126 1.308 sum 9.313 2.004 -17.407 19.843 Atomic orbital electron populations 1.21919 0.94220 1.02991 1.01594 1.22023 0.95380 0.95737 0.84365 0.90991 1.21196 0.89086 0.91656 0.92106 0.91106 1.42555 1.32696 1.51393 1.08905 1.19192 1.10851 1.21373 0.86183 0.91070 1.24738 0.97870 1.00066 0.97861 1.69646 1.18335 1.35480 1.34322 0.86274 0.76953 0.78058 0.84893 1.21247 1.21768 1.21258 1.23578 0.99353 1.02477 0.94699 1.22676 0.94504 0.89077 0.96525 1.48365 1.52017 1.28421 1.04586 1.16709 0.78821 0.84398 0.80662 1.90757 1.43978 1.24834 1.83436 1.20451 1.16057 0.98072 0.93275 1.25024 0.94182 0.93760 0.96696 1.77250 1.23602 1.11542 0.97490 1.49639 1.51361 1.14337 1.06545 1.20974 0.76141 0.92141 0.73834 1.93154 1.43553 1.97069 1.82242 1.93146 1.71044 1.64468 1.87464 1.23059 0.92979 0.92561 0.92224 0.91488 0.91375 0.92932 0.77505 0.93358 0.91880 0.89296 0.90664 0.91168 0.77252 0.81426 0.79092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.51 37.15 0.32 -2.46 16 2 C 0.13 2.20 3.40 -66.95 -0.23 1.97 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.17 3.11 3.48 -66.10 -0.23 2.88 16 5 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 6 N -0.71 -16.26 4.54 -51.66 -0.23 -16.50 16 7 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -26.80 13.06 55.49 0.72 -26.07 16 11 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C -0.16 -2.42 6.78 -24.46 -0.17 -2.58 16 16 C 0.09 1.31 5.08 -2.41 -0.01 1.30 16 17 N -0.60 -9.52 3.06 -164.13 -0.50 -10.02 16 18 C 0.61 9.91 7.58 -12.52 -0.09 9.81 16 19 O -0.55 -10.50 16.17 5.27 0.09 -10.42 16 20 C -0.26 -3.60 6.05 -105.07 -0.64 -4.24 16 21 C 0.09 1.12 10.28 -16.98 -0.17 0.94 16 22 N -0.28 -3.31 12.50 30.86 0.39 -2.93 16 23 N -0.43 -4.56 3.84 -66.10 -0.25 -4.81 16 24 C 0.50 3.65 6.37 59.84 0.38 4.03 16 25 F -0.18 -1.50 17.47 2.25 0.04 -1.46 16 26 F -0.18 -1.44 17.47 2.25 0.04 -1.40 16 27 C 0.14 1.64 11.20 -16.56 -0.19 1.45 16 28 H 0.07 1.38 6.20 -51.93 -0.32 1.06 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 31 H 0.39 9.56 5.67 -40.82 -0.23 9.33 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 36 H 0.07 0.79 5.92 -51.93 -0.31 0.48 16 37 H 0.21 2.17 4.86 -52.49 -0.26 1.92 16 38 H 0.17 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -31.61 333.64 -5.38 -36.98 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.39 Total: 8.85 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.27 Total: 6.32 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.12 Total: -60.33 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.61 -5.38 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987269808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.559 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds