Wall clock time and date at job start Tue Mar 31 2020 10:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87570 * 2 1 4 4 C 1.54323 * 109.88286 * 238.98361 * 2 1 3 5 5 C 1.55402 * 102.82762 * 218.48320 * 4 2 1 6 6 H 1.09004 * 111.06652 * 153.48725 * 5 4 2 7 7 N 1.46500 * 110.89214 * 277.26308 * 5 4 2 8 8 C 1.36928 * 120.00345 * 198.68849 * 7 5 4 9 9 H 1.08007 * 119.99808 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00425 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00445 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99962 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47414 * 89.99772 * 12 10 8 14 14 H 1.48502 * 109.47455 * 210.00202 * 12 10 8 15 15 H 1.48501 * 109.46787 * 330.00149 * 12 10 8 16 16 C 1.54907 * 101.66477 * 35.33904 * 5 4 2 17 17 N 1.47021 * 109.88194 * 121.01552 * 2 1 3 18 18 C 1.34778 * 125.64887 * 298.32593 * 17 2 1 19 19 O 1.21620 * 120.00103 * 354.09532 * 18 17 2 20 20 C 1.47162 * 119.99877 * 174.10035 * 18 17 2 21 21 C 1.38410 * 126.88518 * 353.57203 * 20 18 17 22 22 C 1.39674 * 105.35909 * 180.02562 * 21 20 18 23 23 N 1.30864 * 107.86261 * 359.97438 * 22 21 20 24 24 N 1.28443 * 110.92502 * 359.71673 * 23 22 21 25 25 C 1.46504 * 125.19019 * 180.27487 * 24 23 22 26 26 F 1.39902 * 109.46840 * 20.45561 * 25 24 23 27 27 F 1.39899 * 109.47058 * 140.45393 * 25 24 23 28 28 H 1.09003 * 109.47050 * 300.70331 * 1 2 3 29 29 H 1.08996 * 109.47502 * 180.70096 * 1 2 3 30 30 H 1.09005 * 109.47058 * 60.69566 * 1 2 3 31 31 H 1.09000 * 110.72161 * 336.76006 * 4 2 1 32 32 H 1.09003 * 110.72170 * 100.02905 * 4 2 1 33 33 H 0.96998 * 119.99642 * 18.69356 * 7 5 4 34 34 H 0.96996 * 120.00122 * 179.97438 * 11 10 8 35 35 H 1.09005 * 110.36375 * 204.23304 * 16 5 4 36 36 H 1.09002 * 110.36688 * 81.91431 * 16 5 4 37 37 H 1.08000 * 127.31978 * 359.97438 * 21 20 18 38 38 H 1.08000 * 126.06568 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47453 * 260.45832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 3.2876 -1.5152 -0.6902 6 1 3.4858 -2.4128 -1.2760 7 7 4.4675 -0.6478 -0.6485 8 6 5.7188 -1.1974 -0.5657 9 1 5.8361 -2.2706 -0.5316 10 6 6.8367 -0.3755 -0.5256 11 7 8.0397 -0.9039 -0.4465 12 14 6.6339 1.4805 -0.5838 13 1 6.5039 2.0079 0.7982 14 1 7.8218 2.0881 -1.2358 15 1 5.4147 1.8211 -1.3603 16 6 2.8144 -1.8784 0.7394 17 7 2.0300 -0.7124 1.1849 18 6 1.8085 -0.3579 2.4662 19 8 1.2362 0.6853 2.7183 20 6 2.2591 -1.2329 3.5602 21 6 2.8079 -2.4979 3.4399 22 6 3.0689 -2.9138 4.7475 23 7 2.6962 -1.9545 5.5558 24 7 2.2253 -0.9571 4.8976 25 6 1.7239 0.2850 5.4911 26 9 2.2428 0.4275 6.7824 27 9 2.1231 1.3716 4.7055 28 1 -0.3633 0.5247 0.8836 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5030 -0.8962 31 1 1.3051 -1.4436 -1.6203 32 1 2.3530 -0.0432 -2.0201 33 1 4.3621 0.3160 -0.6794 34 1 8.8208 -0.3295 -0.4189 35 1 3.6716 -2.0320 1.3951 36 1 2.1885 -2.7705 0.7167 37 1 2.9939 -3.0469 2.5287 38 1 3.5015 -3.8593 5.0395 39 1 0.6354 0.2514 5.5386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988874904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:50 Heat of formation + Delta-G solvation = -10.816772 kcal Electronic energy + Delta-G solvation = -27472.279626 eV Core-core repulsion = 23282.151123 eV Total energy + Delta-G solvation = -4190.128503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.35102 -47.43982 -42.58153 -39.91845 -37.52760 -34.23500 -33.05719 -32.31415 -31.57383 -30.20854 -29.08363 -26.45982 -25.78472 -24.10619 -23.26703 -22.08319 -21.11975 -20.34980 -19.62323 -18.26973 -17.81166 -17.66830 -17.36487 -16.71933 -16.21929 -15.58014 -15.20059 -14.77424 -14.49195 -14.22969 -14.16502 -13.95677 -13.82693 -13.61617 -13.40701 -13.05059 -12.94699 -12.78275 -12.40444 -12.31728 -12.13718 -12.03453 -11.52956 -11.21711 -11.00048 -10.84185 -10.64069 -10.45216 -10.14874 -9.98080 -9.69227 -9.56535 -9.20720 -9.12640 -8.48645 -7.40417 -5.87804 -3.25195 1.07718 1.67927 2.49396 2.93417 3.23882 3.31740 3.36325 3.41042 3.42054 3.91711 4.32367 4.33332 4.50862 4.82571 4.87806 4.92233 5.02677 5.05213 5.18333 5.38736 5.41519 5.47684 5.58781 5.64075 5.66181 5.80057 5.91796 5.99953 6.16598 6.18713 6.22349 6.34014 6.38609 6.44469 6.56220 7.57397 7.76940 7.85344 8.15218 8.30915 9.07519 9.80560 9.98108 11.29602 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005311 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.754254 B = 5271.144163 C = 5942.249563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.140 4.140 5 C 0.174 3.826 6 H 0.083 0.917 7 N -0.736 5.736 8 C -0.253 4.253 9 H 0.094 0.906 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.880 3.120 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.056 3.944 17 N -0.583 5.583 18 C 0.599 3.401 19 O -0.542 6.542 20 C -0.012 4.012 21 C -0.175 4.175 22 C 0.016 3.984 23 N -0.267 5.267 24 N -0.333 5.333 25 C 0.507 3.493 26 F -0.173 7.173 27 F -0.154 7.154 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.143 -2.965 5.979 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.101 0.899 7 N -0.378 5.378 8 C -0.382 4.382 9 H 0.112 0.888 10 C -0.184 4.184 11 N -0.574 5.574 12 Si 0.710 3.290 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.069 4.069 17 N -0.315 5.315 18 C 0.386 3.614 19 O -0.420 6.420 20 C -0.137 4.137 21 C -0.203 4.203 22 C -0.163 4.163 23 N -0.096 5.096 24 N -0.131 5.131 25 C 0.375 3.625 26 F -0.154 7.154 27 F -0.136 7.136 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.197 0.803 38 H 0.212 0.788 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.333 -2.017 7.391 18.951 hybrid contribution 0.380 1.216 -0.659 1.434 sum -16.954 -0.801 6.731 18.259 Atomic orbital electron populations 1.22131 0.94916 1.02071 1.02628 1.21553 0.93928 0.96708 0.84180 0.90687 1.23137 0.98401 1.00180 0.96142 1.21363 0.86119 0.94544 0.91715 0.89933 1.42704 1.02025 1.03996 1.89061 1.19015 0.81357 0.93928 1.43939 0.88835 1.24647 0.95137 0.97241 1.01388 1.69687 0.97097 1.34206 1.56391 0.86635 0.77005 0.87408 0.77968 1.21077 1.21560 1.20284 1.23832 0.94951 0.86980 1.01181 1.48019 1.50948 1.28859 1.03626 1.16387 0.79837 0.84177 0.81006 1.90821 1.44165 1.23719 1.83344 1.21425 1.09502 0.97970 0.84824 1.22996 1.02560 0.94667 1.00104 1.23818 1.03062 0.99361 0.90051 1.73217 1.14307 0.96251 1.25861 1.46913 1.47784 1.13912 1.04456 1.21344 0.95908 0.73043 0.72216 1.93119 1.89557 1.94916 1.37786 1.93249 1.92717 1.53280 1.74307 0.91720 0.92490 0.91621 0.89998 0.89619 0.80396 0.92897 0.88634 0.91587 0.80277 0.78830 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.10 37.16 0.34 -1.52 16 2 C 0.14 1.95 3.41 -66.95 -0.23 1.73 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.14 -1.80 6.06 -24.76 -0.15 -1.95 16 5 C 0.17 2.80 3.70 -65.65 -0.24 2.56 16 6 H 0.08 1.28 8.13 -51.93 -0.42 0.85 16 7 N -0.74 -15.83 5.07 -51.22 -0.26 -16.09 16 8 C -0.25 -6.60 10.47 -15.07 -0.16 -6.75 16 9 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 10 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 11 N -0.93 -28.16 13.97 55.49 0.78 -27.39 16 12 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 13 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 16 C 0.06 0.81 4.82 -2.53 -0.01 0.80 16 17 N -0.58 -8.99 3.06 -164.37 -0.50 -9.49 16 18 C 0.60 10.05 7.42 -12.64 -0.09 9.95 16 19 O -0.54 -9.87 13.02 5.26 0.07 -9.80 16 20 C -0.01 -0.19 6.77 -82.06 -0.56 -0.74 16 21 C -0.18 -2.37 9.28 -38.98 -0.36 -2.73 16 22 C 0.02 0.21 12.03 -17.43 -0.21 0.00 16 23 N -0.27 -3.96 11.57 30.59 0.35 -3.60 16 24 N -0.33 -5.05 3.73 -62.38 -0.23 -5.29 16 25 C 0.51 6.73 6.06 59.85 0.36 7.10 16 26 F -0.17 -2.33 17.17 2.25 0.04 -2.30 16 27 F -0.15 -2.51 14.37 2.25 0.03 -2.48 16 28 H 0.06 0.86 7.09 -51.93 -0.37 0.49 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.36 8.05 5.67 -40.82 -0.23 7.82 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.10 1.58 5.95 -51.93 -0.31 1.28 16 36 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 37 H 0.18 2.09 4.99 -52.49 -0.26 1.83 16 38 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.16 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -33.39 327.62 -5.44 -38.84 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.53 Total: 6.73 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.41 Total: 8.70 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.13 Total: -61.86 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.07 Total: -4.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.39 -5.44 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988874904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds