Wall clock time and date at job start Tue Mar 31 2020 10:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87570 * 2 1 4 4 C 1.54323 * 109.88286 * 238.98361 * 2 1 3 5 5 C 1.55402 * 102.82762 * 218.48320 * 4 2 1 6 6 H 1.09004 * 111.06652 * 153.48725 * 5 4 2 7 7 N 1.46500 * 110.89214 * 277.26308 * 5 4 2 8 8 C 1.36928 * 120.00345 * 198.68849 * 7 5 4 9 9 H 1.08007 * 119.99808 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00425 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00445 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99962 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47414 * 89.99772 * 12 10 8 14 14 H 1.48502 * 109.47455 * 210.00202 * 12 10 8 15 15 H 1.48501 * 109.46787 * 330.00149 * 12 10 8 16 16 C 1.54907 * 101.66477 * 35.33904 * 5 4 2 17 17 N 1.47021 * 109.88194 * 121.01552 * 2 1 3 18 18 C 1.34778 * 125.64887 * 298.32593 * 17 2 1 19 19 O 1.21620 * 120.00103 * 354.09532 * 18 17 2 20 20 C 1.47162 * 119.99877 * 174.10035 * 18 17 2 21 21 C 1.38410 * 126.88518 * 353.57203 * 20 18 17 22 22 C 1.39674 * 105.35909 * 180.02562 * 21 20 18 23 23 N 1.30864 * 107.86261 * 359.97438 * 22 21 20 24 24 N 1.28443 * 110.92502 * 359.71673 * 23 22 21 25 25 C 1.46504 * 125.19019 * 180.27487 * 24 23 22 26 26 F 1.39902 * 109.46840 * 20.45561 * 25 24 23 27 27 F 1.39899 * 109.47058 * 140.45393 * 25 24 23 28 28 H 1.09003 * 109.47050 * 300.70331 * 1 2 3 29 29 H 1.08996 * 109.47502 * 180.70096 * 1 2 3 30 30 H 1.09005 * 109.47058 * 60.69566 * 1 2 3 31 31 H 1.09000 * 110.72161 * 336.76006 * 4 2 1 32 32 H 1.09003 * 110.72170 * 100.02905 * 4 2 1 33 33 H 0.96998 * 119.99642 * 18.69356 * 7 5 4 34 34 H 0.96996 * 120.00122 * 179.97438 * 11 10 8 35 35 H 1.09005 * 110.36375 * 204.23304 * 16 5 4 36 36 H 1.09002 * 110.36688 * 81.91431 * 16 5 4 37 37 H 1.08000 * 127.31978 * 359.97438 * 21 20 18 38 38 H 1.08000 * 126.06568 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47453 * 260.45832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 3.2876 -1.5152 -0.6902 6 1 3.4858 -2.4128 -1.2760 7 7 4.4675 -0.6478 -0.6485 8 6 5.7188 -1.1974 -0.5657 9 1 5.8361 -2.2706 -0.5316 10 6 6.8367 -0.3755 -0.5256 11 7 8.0397 -0.9039 -0.4465 12 14 6.6339 1.4805 -0.5838 13 1 6.5039 2.0079 0.7982 14 1 7.8218 2.0881 -1.2358 15 1 5.4147 1.8211 -1.3603 16 6 2.8144 -1.8784 0.7394 17 7 2.0300 -0.7124 1.1849 18 6 1.8085 -0.3579 2.4662 19 8 1.2362 0.6853 2.7183 20 6 2.2591 -1.2329 3.5602 21 6 2.8079 -2.4979 3.4399 22 6 3.0689 -2.9138 4.7475 23 7 2.6962 -1.9545 5.5558 24 7 2.2253 -0.9571 4.8976 25 6 1.7239 0.2850 5.4911 26 9 2.2428 0.4275 6.7824 27 9 2.1231 1.3716 4.7055 28 1 -0.3633 0.5247 0.8836 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5030 -0.8962 31 1 1.3051 -1.4436 -1.6203 32 1 2.3530 -0.0432 -2.0201 33 1 4.3621 0.3160 -0.6794 34 1 8.8208 -0.3295 -0.4189 35 1 3.6716 -2.0320 1.3951 36 1 2.1885 -2.7705 0.7167 37 1 2.9939 -3.0469 2.5287 38 1 3.5015 -3.8593 5.0395 39 1 0.6354 0.2514 5.5386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988874904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:50 Heat of formation + Delta-G solvation = -34.343329 kcal Electronic energy + Delta-G solvation = -27473.299814 eV Core-core repulsion = 23282.151123 eV Total energy + Delta-G solvation = -4191.148691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.43625 -48.54577 -43.65117 -41.11532 -38.81330 -35.93696 -34.14734 -33.48533 -33.31451 -31.28941 -30.60094 -27.50421 -26.84605 -25.58199 -24.80386 -23.14367 -22.31072 -21.58834 -20.76775 -19.71694 -19.31112 -18.87089 -18.46127 -17.91208 -17.44777 -16.74338 -16.54208 -16.12292 -15.83224 -15.73740 -15.32035 -15.18895 -14.99340 -14.76405 -14.67461 -14.48499 -14.24711 -14.05192 -13.64612 -13.49170 -13.31171 -13.19971 -13.03774 -12.77705 -12.37772 -12.17422 -11.99860 -11.84158 -11.77905 -11.50259 -11.23165 -11.02704 -10.63207 -10.31066 -9.77361 -9.24003 -8.02622 -5.33639 -0.05418 0.65260 1.31359 1.35712 1.40295 1.47240 1.79059 2.05828 2.43912 2.45208 2.88601 3.18424 3.29235 3.37873 3.58143 3.75664 3.83359 3.91208 3.98550 4.09661 4.31856 4.37341 4.48094 4.66232 4.70309 4.71401 4.79582 4.96001 5.08264 5.13221 5.18902 5.21346 5.33763 5.41671 5.45473 5.81469 6.22560 6.37204 6.70236 6.94533 7.08386 7.85817 8.00536 9.18242 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.005311 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.754254 B = 5271.144163 C = 5942.249563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.132 3.868 3 H 0.049 0.951 4 C -0.123 4.123 5 C 0.159 3.841 6 H 0.096 0.904 7 N -0.744 5.744 8 C -0.215 4.215 9 H 0.077 0.923 10 C -0.056 4.056 11 N -0.978 5.978 12 Si 0.932 3.068 13 H -0.300 1.300 14 H -0.297 1.297 15 H -0.251 1.251 16 C 0.063 3.937 17 N -0.585 5.585 18 C 0.591 3.409 19 O -0.565 6.565 20 C -0.038 4.038 21 C -0.169 4.169 22 C 0.021 3.979 23 N -0.287 5.287 24 N -0.344 5.344 25 C 0.500 3.500 26 F -0.177 7.177 27 F -0.176 7.176 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.359 0.641 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.197 0.803 38 H 0.231 0.769 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.566 -4.134 5.233 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.029 3.971 3 H 0.067 0.933 4 C -0.161 4.161 5 C 0.050 3.950 6 H 0.114 0.886 7 N -0.386 5.386 8 C -0.346 4.346 9 H 0.095 0.905 10 C -0.248 4.248 11 N -0.629 5.629 12 Si 0.762 3.238 13 H -0.228 1.228 14 H -0.224 1.224 15 H -0.176 1.176 16 C -0.061 4.061 17 N -0.316 5.316 18 C 0.378 3.622 19 O -0.445 6.445 20 C -0.163 4.163 21 C -0.197 4.197 22 C -0.158 4.158 23 N -0.116 5.116 24 N -0.141 5.141 25 C 0.369 3.631 26 F -0.158 7.158 27 F -0.158 7.158 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.192 0.808 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.214 0.786 38 H 0.247 0.753 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.836 -3.198 6.622 21.156 hybrid contribution 1.062 1.457 -0.408 1.848 sum -18.775 -1.741 6.214 19.853 Atomic orbital electron populations 1.22036 0.92772 1.03109 1.02665 1.21709 0.95627 0.95524 0.84208 0.93275 1.23101 0.97376 1.00325 0.95291 1.21738 0.85425 0.94703 0.93137 0.88614 1.42806 1.02179 1.04482 1.89112 1.19081 0.82978 0.93122 1.39389 0.90480 1.25261 0.95222 1.00776 1.03572 1.69824 0.97811 1.35200 1.60066 0.85749 0.77531 0.83333 0.77148 1.22794 1.22376 1.17563 1.23758 0.95037 0.88263 0.99048 1.48137 1.50706 1.29129 1.03640 1.16630 0.79754 0.84124 0.81643 1.90799 1.45311 1.24679 1.83740 1.21540 1.10979 0.98824 0.84928 1.23300 1.01313 0.93913 1.01159 1.24480 1.01809 1.00055 0.89461 1.73216 1.14927 0.96790 1.26645 1.47080 1.48292 1.14336 1.04439 1.22009 0.97585 0.72050 0.71481 1.93101 1.89841 1.94888 1.37996 1.93198 1.93072 1.54508 1.74993 0.93814 0.90803 0.89523 0.86021 0.89634 0.80825 0.93654 0.90845 0.87211 0.78585 0.75296 0.78696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.10 71.98 0.66 -2.33 16 2 C 0.13 3.37 3.41 45.34 0.15 3.53 16 3 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.12 -2.66 6.06 31.87 0.19 -2.47 16 5 C 0.16 4.61 3.70 46.47 0.17 4.78 16 6 H 0.10 2.59 8.13 -2.38 -0.02 2.57 16 7 N -0.74 -30.73 5.07 -315.97 -1.60 -32.34 16 8 C -0.21 -11.08 10.47 84.03 0.88 -10.20 16 9 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 10 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 11 N -0.98 -60.85 13.97 21.65 0.30 -60.54 16 12 Si 0.93 45.86 27.74 68.60 1.90 47.76 16 13 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 14 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 15 H -0.25 -11.07 6.52 99.48 0.65 -10.43 16 16 C 0.06 1.65 4.82 86.85 0.42 2.06 16 17 N -0.58 -16.82 3.06 -792.20 -2.43 -19.25 16 18 C 0.59 19.25 7.42 86.59 0.64 19.89 16 19 O -0.56 -20.46 13.02 -4.09 -0.05 -20.52 16 20 C -0.04 -1.14 6.77 40.79 0.28 -0.86 16 21 C -0.17 -4.20 9.28 22.66 0.21 -3.99 16 22 C 0.02 0.49 12.03 85.18 1.02 1.51 16 23 N -0.29 -8.11 11.57 -57.14 -0.66 -8.77 16 24 N -0.34 -10.14 3.73 -351.28 -1.31 -11.45 16 25 C 0.50 13.08 6.06 127.77 0.77 13.85 16 26 F -0.18 -4.75 17.17 44.97 0.77 -3.97 16 27 F -0.18 -5.82 14.37 44.97 0.65 -5.18 16 28 H 0.04 1.08 7.09 -2.39 -0.02 1.06 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.12 1.76 7.85 -2.39 -0.02 1.74 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.36 15.34 5.67 -92.71 -0.53 14.82 16 34 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 2.28 5.95 -2.38 -0.01 2.27 16 36 H 0.11 1.95 7.77 -2.39 -0.02 1.94 16 37 H 0.20 4.01 4.99 -2.91 -0.01 3.99 16 38 H 0.23 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.20 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -74.63 327.62 3.96 -70.67 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.52 Total: 20.56 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.87 Total: 23.03 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.70 Total: -132.35 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 1.42 Total: -9.15 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -74.63 3.96 -70.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988874904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.331 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds