Wall clock time and date at job start Tue Mar 31 2020 10:49:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 110.00161 * 2 1
4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3
5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1
6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2
7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2
8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4
9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5
10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5
11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7
12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7
13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8
14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8
15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8
16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2
17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3
18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1
19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2
20 20 C 1.47711 * 120.00288 * 180.02562 * 18 17 2
21 21 C 1.41501 * 126.51809 * 179.71047 * 20 18 17
22 22 C 1.35367 * 105.50320 * 179.84284 * 21 20 18
23 23 C 1.50691 * 126.38904 * 180.14165 * 22 21 20
24 24 F 1.39901 * 109.46910 * 300.30464 * 23 22 21
25 25 F 1.39901 * 109.47086 * 60.29635 * 23 22 21
26 26 N 1.35041 * 107.22597 * 0.41527 * 22 21 20
27 27 H 0.96996 * 124.88430 * 179.72023 * 26 22 21
28 28 N 1.28468 * 110.23174 * 359.72605 * 26 22 21
29 29 H 1.08999 * 109.47575 * 181.09658 * 1 2 3
30 30 H 1.09008 * 109.46550 * 301.09615 * 1 2 3
31 31 H 1.09003 * 109.47111 * 61.08992 * 1 2 3
32 32 H 1.09007 * 110.71733 * 100.02519 * 4 2 1
33 33 H 1.08999 * 110.71890 * 336.75990 * 4 2 1
34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4
35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8
36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4
37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4
38 38 H 1.08001 * 127.24732 * 359.97438 * 21 20 18
39 39 H 1.08996 * 109.47575 * 180.29800 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7496 -1.2428
5 6 3.2875 -1.5143 -0.6926
6 1 4.1654 -0.8692 -0.6612
7 7 3.5529 -2.7197 -1.4818
8 6 4.8162 -3.2467 -1.5230
9 1 5.6169 -2.7735 -0.9740
10 6 5.0689 -4.3854 -2.2755
11 7 4.0933 -4.9618 -2.9450
12 14 6.7937 -5.0999 -2.3380
13 1 7.2249 -5.4729 -0.9668
14 1 6.7987 -6.3066 -3.2033
15 1 7.7287 -4.0883 -2.8929
16 6 2.8145 -1.8795 0.7367
17 7 2.0300 -0.7141 1.1838
18 6 1.8073 -0.3622 2.4657
19 8 1.1418 0.6232 2.7186
20 6 2.3727 -1.1732 3.5631
21 6 2.2315 -0.9290 4.9497
22 6 2.9101 -1.9264 5.5638
23 6 3.0615 -2.1215 7.0503
24 9 3.6882 -1.0011 7.6063
25 9 1.7988 -2.2851 7.6301
26 7 3.4313 -2.7105 4.5957
27 1 3.9711 -3.5010 4.7528
28 7 3.1096 -2.2588 3.4369
29 1 -0.3634 -1.0274 0.0197
30 1 -0.3633 0.5308 0.8801
31 1 -0.3633 0.4968 -0.8996
32 1 2.3528 -0.0460 -2.0202
33 1 1.3049 -1.4459 -1.6183
34 1 2.8339 -3.1445 -1.9753
35 1 4.2698 -5.7577 -3.4705
36 1 2.1885 -2.7715 0.7127
37 1 3.6716 -2.0340 1.3920
38 1 1.6935 -0.1187 5.4193
39 1 3.6663 -3.0081 7.2407
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989431152.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:36
Heat of formation + Delta-G solvation = -37.973573 kcal
Electronic energy + Delta-G solvation = -26111.432880 eV
Core-core repulsion = 21920.126770 eV
Total energy + Delta-G solvation = -4191.306110 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.130 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-49.44628 -47.45192 -42.97396 -39.73221 -37.31815 -34.20530 -32.81300 -32.01681
-31.41424 -31.05695 -28.40517 -26.57117 -25.45321 -24.65729 -23.62476 -21.69670
-21.19280 -20.27141 -19.30516 -18.36687 -17.75226 -17.62034 -17.41582 -17.03279
-16.12304 -15.72396 -15.36177 -15.03112 -14.41567 -14.28604 -14.05567 -13.92134
-13.80162 -13.64188 -13.37096 -13.24396 -13.06871 -12.60576 -12.28070 -12.12183
-11.83470 -11.67281 -11.30302 -11.11649 -10.97373 -10.68497 -10.57001 -10.30656
-10.04473 -9.92193 -9.76607 -9.72908 -9.59647 -9.01710 -8.32980 -7.09346
-5.86134 -3.16490 1.30058 1.67545 2.27830 3.01188 3.37349 3.39914
3.42759 3.43390 3.44426 3.59700 4.00512 4.26136 4.48903 4.50704
4.83153 5.07818 5.14254 5.20738 5.27169 5.42149 5.51052 5.60538
5.75083 5.80039 5.87595 5.96908 6.14254 6.18708 6.28585 6.38187
6.49005 6.51025 6.57884 6.76533 6.87727 7.48631 7.61682 7.77978
8.30179 8.33256 9.43301 9.97508 10.32736 11.35923
Molecular weight = 314.13amu
Principal moments of inertia in cm(-1)
A = 0.012311 B = 0.003803 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.786083 B = 7361.072528 C = 9231.032670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.139 3.861
3 H 0.075 0.925
4 C -0.138 4.138
5 C 0.171 3.829
6 H 0.067 0.933
7 N -0.710 5.710
8 C -0.247 4.247
9 H 0.072 0.928
10 C -0.008 4.008
11 N -0.930 5.930
12 Si 0.908 3.092
13 H -0.286 1.286
14 H -0.291 1.291
15 H -0.285 1.285
16 C 0.076 3.924
17 N -0.594 5.594
18 C 0.612 3.388
19 O -0.542 6.542
20 C -0.006 4.006
21 C -0.122 4.122
22 C -0.085 4.085
23 C 0.354 3.646
24 F -0.187 7.187
25 F -0.187 7.187
26 N -0.361 5.361
27 H 0.449 0.551
28 N -0.212 5.212
29 H 0.056 0.944
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.387 0.613
35 H 0.257 0.743
36 H 0.068 0.932
37 H 0.086 0.914
38 H 0.169 0.831
39 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.284 5.465 16.974 18.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.036 3.964
3 H 0.093 0.907
4 C -0.177 4.177
5 C 0.058 3.942
6 H 0.085 0.915
7 N -0.350 5.350
8 C -0.378 4.378
9 H 0.089 0.911
10 C -0.205 4.205
11 N -0.578 5.578
12 Si 0.738 3.262
13 H -0.213 1.213
14 H -0.217 1.217
15 H -0.212 1.212
16 C -0.050 4.050
17 N -0.327 5.327
18 C 0.398 3.602
19 O -0.419 6.419
20 C -0.166 4.166
21 C -0.150 4.150
22 C -0.210 4.210
23 C 0.299 3.701
24 F -0.168 7.168
25 F -0.168 7.168
26 N -0.078 5.078
27 H 0.295 0.705
28 N -0.049 5.049
29 H 0.075 0.925
30 H 0.085 0.915
31 H 0.083 0.917
32 H 0.098 0.902
33 H 0.097 0.903
34 H 0.221 0.779
35 H 0.067 0.933
36 H 0.086 0.914
37 H 0.104 0.896
38 H 0.187 0.813
39 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -3.036 5.300 16.357 17.460
hybrid contribution 0.641 -0.631 0.584 1.072
sum -2.396 4.669 16.941 17.735
Atomic orbital electron populations
1.22138 0.94991 1.02302 1.02486 1.21572 0.94349 0.96133 0.84377
0.90721 1.23066 0.99289 0.99684 0.95652 1.21330 0.94624 0.89461
0.88783 0.91513 1.42293 1.09570 1.27790 1.55342 1.19213 0.86822
1.07016 1.24704 0.91053 1.24746 0.97547 0.98364 0.99799 1.69644
1.30840 1.22474 1.34822 0.86270 0.84084 0.78439 0.77363 1.21274
1.21653 1.21155 1.23653 0.95140 0.86893 0.99301 1.48455 1.51157
1.29021 1.04027 1.16424 0.80076 0.83284 0.80397 1.90762 1.40816
1.27018 1.83284 1.22036 1.03736 0.96359 0.94488 1.21600 1.01701
0.99787 0.91941 1.21700 1.07968 0.98702 0.92664 1.19257 0.79517
0.88116 0.83255 1.93071 1.81975 1.55695 1.86084 1.93071 1.42871
1.95743 1.85144 1.43347 1.38994 1.23330 1.02113 0.70491 1.73995
1.13636 1.11735 1.05563 0.92496 0.91533 0.91745 0.90244 0.90348
0.77862 0.93308 0.91401 0.89631 0.81328 0.85966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.23 9.09 37.16 0.34 -1.89 16
2 C 0.14 2.10 3.46 -66.95 -0.23 1.87 16
3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
4 C -0.14 -2.17 6.12 -24.90 -0.15 -2.32 16
5 C 0.17 3.23 3.71 -65.78 -0.24 2.98 16
6 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16
7 N -0.71 -16.75 5.24 -51.35 -0.27 -17.02 16
8 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16
9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16
11 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16
12 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16
13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
16 C 0.08 1.35 5.85 -2.53 -0.01 1.33 16
17 N -0.59 -9.83 3.06 -164.17 -0.50 -10.34 16
18 C 0.61 10.42 7.65 -12.39 -0.09 10.33 16
19 O -0.54 -10.11 15.97 5.30 0.08 -10.03 16
20 C -0.01 -0.10 6.97 -82.76 -0.58 -0.67 16
21 C -0.12 -1.55 10.73 -39.36 -0.42 -1.97 16
22 C -0.08 -0.84 6.66 -82.21 -0.55 -1.38 16
23 C 0.35 2.51 5.79 36.00 0.21 2.72 16
24 F -0.19 -1.68 17.32 2.25 0.04 -1.64 16
25 F -0.19 -1.68 17.32 2.25 0.04 -1.64 16
26 N -0.36 -3.56 6.83 33.50 0.23 -3.33 16
27 H 0.45 2.61 8.96 -190.44 -1.71 0.90 16
28 N -0.21 -2.97 9.35 33.42 0.31 -2.66 16
29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
30 H 0.07 0.99 6.90 -51.92 -0.36 0.64 16
31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
32 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16
33 H 0.08 1.25 7.71 -51.93 -0.40 0.85 16
34 H 0.39 9.71 7.76 -40.82 -0.32 9.39 16
35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
37 H 0.09 1.55 6.20 -51.93 -0.32 1.23 16
38 H 0.17 2.00 8.06 -52.49 -0.42 1.57 16
39 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16
LS Contribution 339.20 15.07 5.11 5.11
Total: -1.00 -32.37 339.20 -7.27 -39.64
By element:
Atomic # 1 Polarization: 13.66 SS G_CDS: -6.03 Total: 7.63 kcal
Atomic # 6 Polarization: 6.02 SS G_CDS: -1.98 Total: 4.04 kcal
Atomic # 7 Polarization: -60.05 SS G_CDS: 0.49 Total: -59.55 kcal
Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal
Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.29 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -32.37 -7.27 -39.64 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989431152.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.671 kcal
(2) G-P(sol) polarization free energy of solvation -32.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds