Wall clock time and date at job start Tue Mar 31 2020 10:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2 20 20 C 1.47711 * 120.00288 * 180.02562 * 18 17 2 21 21 C 1.41501 * 126.51809 * 179.71047 * 20 18 17 22 22 C 1.35367 * 105.50320 * 179.84284 * 21 20 18 23 23 C 1.50691 * 126.38904 * 180.14165 * 22 21 20 24 24 F 1.39901 * 109.46910 * 300.30464 * 23 22 21 25 25 F 1.39901 * 109.47086 * 60.29635 * 23 22 21 26 26 N 1.35041 * 107.22597 * 0.41527 * 22 21 20 27 27 H 0.96996 * 124.88430 * 179.72023 * 26 22 21 28 28 N 1.28468 * 110.23174 * 359.72605 * 26 22 21 29 29 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 30 30 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 31 31 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 32 32 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 33 33 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 38 38 H 1.08001 * 127.24732 * 359.97438 * 21 20 18 39 39 H 1.08996 * 109.47575 * 180.29800 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.2249 -5.4729 -0.9668 14 1 6.7987 -6.3066 -3.2033 15 1 7.7287 -4.0883 -2.8929 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1418 0.6232 2.7186 20 6 2.3727 -1.1732 3.5631 21 6 2.2315 -0.9290 4.9497 22 6 2.9101 -1.9264 5.5638 23 6 3.0615 -2.1215 7.0503 24 9 3.6882 -1.0011 7.6063 25 9 1.7988 -2.2851 7.6301 26 7 3.4313 -2.7105 4.5957 27 1 3.9711 -3.5010 4.7528 28 7 3.1096 -2.2588 3.4369 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3633 0.5308 0.8801 31 1 -0.3633 0.4968 -0.8996 32 1 2.3528 -0.0460 -2.0202 33 1 1.3049 -1.4459 -1.6183 34 1 2.8339 -3.1445 -1.9753 35 1 4.2698 -5.7577 -3.4705 36 1 2.1885 -2.7715 0.7127 37 1 3.6716 -2.0340 1.3920 38 1 1.6935 -0.1187 5.4193 39 1 3.6663 -3.0081 7.2407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989431152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:35 Heat of formation + Delta-G solvation = -60.039727 kcal Electronic energy + Delta-G solvation = -26112.389741 eV Core-core repulsion = 21920.126770 eV Total energy + Delta-G solvation = -4192.262971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07819 -48.09556 -43.93429 -41.07338 -38.73903 -35.99074 -33.91125 -33.21478 -32.91701 -32.22635 -30.07124 -27.29864 -26.77594 -26.08613 -25.30271 -22.60090 -22.45178 -21.75084 -20.26457 -19.47362 -19.25168 -18.40664 -18.26337 -18.21844 -17.44697 -16.82534 -16.70463 -16.26061 -15.93322 -15.43497 -15.25655 -14.97503 -14.94593 -14.83260 -14.45033 -14.43398 -14.16905 -13.99781 -13.71448 -13.44031 -13.06527 -12.84390 -12.79569 -12.50346 -12.41908 -12.20972 -12.05856 -11.94395 -11.66326 -11.49638 -11.26162 -10.91694 -10.73787 -10.54056 -9.70191 -9.03678 -7.92860 -5.22705 0.30115 0.64699 1.46796 1.50667 1.52655 1.58746 1.86761 2.19270 2.57107 2.67547 3.06616 3.14576 3.38048 3.41262 3.63769 3.86305 3.89054 3.99452 4.03905 4.16832 4.18678 4.32957 4.46053 4.50218 4.51914 4.74510 4.83197 4.90636 5.02249 5.09231 5.16644 5.24572 5.38218 5.42093 5.55156 5.81302 6.27577 6.39687 6.54478 7.01805 7.35558 8.06484 8.31805 9.29861 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003803 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.786083 B = 7361.072528 C = 9231.032670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.065 0.935 7 N -0.720 5.720 8 C -0.244 4.244 9 H 0.077 0.923 10 C -0.067 4.067 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.277 1.277 14 H -0.298 1.298 15 H -0.279 1.279 16 C 0.096 3.904 17 N -0.596 5.596 18 C 0.609 3.391 19 O -0.564 6.564 20 C -0.034 4.034 21 C -0.145 4.145 22 C -0.062 4.062 23 C 0.356 3.644 24 F -0.197 7.197 25 F -0.197 7.197 26 N -0.338 5.338 27 H 0.468 0.532 28 N -0.236 5.236 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 5.379 18.434 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.083 0.917 7 N -0.359 5.359 8 C -0.375 4.375 9 H 0.095 0.905 10 C -0.260 4.260 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.203 1.203 14 H -0.224 1.224 15 H -0.205 1.205 16 C -0.030 4.030 17 N -0.328 5.328 18 C 0.396 3.604 19 O -0.443 6.443 20 C -0.192 4.192 21 C -0.174 4.174 22 C -0.189 4.189 23 C 0.301 3.699 24 F -0.178 7.178 25 F -0.179 7.179 26 N -0.057 5.057 27 H 0.318 0.682 28 N -0.075 5.075 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.187 0.813 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.073 5.244 17.849 18.719 hybrid contribution 0.327 -0.553 0.226 0.681 sum -1.746 4.691 18.075 18.755 Atomic orbital electron populations 1.22065 0.93856 1.02013 1.03139 1.21695 0.95259 0.96213 0.83473 0.89910 1.22966 0.97576 0.99527 0.96268 1.21473 0.95996 0.88158 0.89073 0.91697 1.42391 1.08515 1.29016 1.55995 1.19578 0.87916 1.06600 1.23442 0.90485 1.25484 1.00932 0.99233 1.00326 1.69795 1.32686 1.22955 1.36232 0.85283 0.80114 0.77336 0.77429 1.20302 1.22437 1.20538 1.23216 0.94783 0.86709 0.98324 1.48467 1.51097 1.28671 1.04522 1.16727 0.79688 0.83211 0.80769 1.90734 1.41850 1.28047 1.83626 1.21873 1.05309 0.97218 0.94819 1.21753 1.03136 1.01195 0.91285 1.22072 1.05637 0.96989 0.94194 1.19810 0.79682 0.89550 0.80849 1.93055 1.82057 1.56753 1.85957 1.93055 1.43987 1.95780 1.85029 1.43375 1.37857 1.23366 1.01129 0.68193 1.73889 1.14269 1.11846 1.07459 0.93141 0.92720 0.89270 0.88598 0.90535 0.79016 0.93989 0.93007 0.89966 0.81290 0.80220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.09 71.98 0.65 -3.43 16 2 C 0.14 4.00 3.46 45.34 0.16 4.16 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -3.81 6.12 31.78 0.19 -3.61 16 5 C 0.16 6.15 3.71 46.38 0.17 6.32 16 6 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 7 N -0.72 -34.06 5.24 -316.38 -1.66 -35.72 16 8 C -0.24 -12.75 9.96 84.03 0.84 -11.92 16 9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 10 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 11 N -0.97 -56.66 13.06 21.65 0.28 -56.37 16 12 Si 0.97 43.96 29.55 68.60 2.03 45.99 16 13 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 C 0.10 3.40 5.85 86.86 0.51 3.91 16 17 N -0.60 -19.66 3.06 -791.57 -2.43 -22.09 16 18 C 0.61 20.88 7.65 86.75 0.66 21.54 16 19 O -0.56 -21.28 15.97 -3.94 -0.06 -21.34 16 20 C -0.03 -1.02 6.97 42.46 0.30 -0.73 16 21 C -0.15 -3.61 10.73 22.41 0.24 -3.36 16 22 C -0.06 -1.09 6.66 41.40 0.28 -0.81 16 23 C 0.36 3.90 5.79 71.23 0.41 4.31 16 24 F -0.20 -3.05 17.32 44.97 0.78 -2.27 16 25 F -0.20 -3.07 17.32 44.97 0.78 -2.29 16 26 N -0.34 -5.92 6.83 -47.93 -0.33 -6.25 16 27 H 0.47 4.02 8.96 -220.00 -1.97 2.05 16 28 N -0.24 -6.42 9.35 -48.17 -0.45 -6.87 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.61 6.90 -2.38 -0.02 1.59 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.08 2.39 7.71 -2.39 -0.02 2.37 16 34 H 0.38 19.19 7.76 -92.71 -0.72 18.47 16 35 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.08 2.98 6.20 -2.39 -0.01 2.97 16 38 H 0.17 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.18 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -70.63 339.20 2.25 -68.38 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -1.57 Total: 25.64 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.88 Total: 13.18 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -4.58 Total: -127.30 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.56 Total: -4.55 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.63 2.25 -68.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989431152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.342 kcal (2) G-P(sol) polarization free energy of solvation -70.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds