Wall clock time and date at job start Tue Mar 31 2020 10:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 110.00161 * 2 1
4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3
5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1
6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2
7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2
8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4
9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5
10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5
11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7
12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7
13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8
14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8
15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8
16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2
17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3
18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1
19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2
20 20 C 1.47711 * 120.00288 * 180.02562 * 18 17 2
21 21 C 1.41501 * 126.51809 * 179.71047 * 20 18 17
22 22 C 1.35367 * 105.50320 * 179.84284 * 21 20 18
23 23 C 1.50691 * 126.38904 * 180.14165 * 22 21 20
24 24 F 1.39901 * 109.46910 * 300.30464 * 23 22 21
25 25 F 1.39901 * 109.47086 * 60.29635 * 23 22 21
26 26 N 1.35041 * 107.22597 * 0.41527 * 22 21 20
27 27 H 0.96996 * 124.88430 * 179.72023 * 26 22 21
28 28 N 1.28468 * 110.23174 * 359.72605 * 26 22 21
29 29 H 1.08999 * 109.47575 * 181.09658 * 1 2 3
30 30 H 1.09008 * 109.46550 * 301.09615 * 1 2 3
31 31 H 1.09003 * 109.47111 * 61.08992 * 1 2 3
32 32 H 1.09007 * 110.71733 * 100.02519 * 4 2 1
33 33 H 1.08999 * 110.71890 * 336.75990 * 4 2 1
34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4
35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8
36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4
37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4
38 38 H 1.08001 * 127.24732 * 359.97438 * 21 20 18
39 39 H 1.08996 * 109.47575 * 180.29800 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7496 -1.2428
5 6 3.2875 -1.5143 -0.6926
6 1 4.1654 -0.8692 -0.6612
7 7 3.5529 -2.7197 -1.4818
8 6 4.8162 -3.2467 -1.5230
9 1 5.6169 -2.7735 -0.9740
10 6 5.0689 -4.3854 -2.2755
11 7 4.0933 -4.9618 -2.9450
12 14 6.7937 -5.0999 -2.3380
13 1 7.2249 -5.4729 -0.9668
14 1 6.7987 -6.3066 -3.2033
15 1 7.7287 -4.0883 -2.8929
16 6 2.8145 -1.8795 0.7367
17 7 2.0300 -0.7141 1.1838
18 6 1.8073 -0.3622 2.4657
19 8 1.1418 0.6232 2.7186
20 6 2.3727 -1.1732 3.5631
21 6 2.2315 -0.9290 4.9497
22 6 2.9101 -1.9264 5.5638
23 6 3.0615 -2.1215 7.0503
24 9 3.6882 -1.0011 7.6063
25 9 1.7988 -2.2851 7.6301
26 7 3.4313 -2.7105 4.5957
27 1 3.9711 -3.5010 4.7528
28 7 3.1096 -2.2588 3.4369
29 1 -0.3634 -1.0274 0.0197
30 1 -0.3633 0.5308 0.8801
31 1 -0.3633 0.4968 -0.8996
32 1 2.3528 -0.0460 -2.0202
33 1 1.3049 -1.4459 -1.6183
34 1 2.8339 -3.1445 -1.9753
35 1 4.2698 -5.7577 -3.4705
36 1 2.1885 -2.7715 0.7127
37 1 3.6716 -2.0340 1.3920
38 1 1.6935 -0.1187 5.4193
39 1 3.6663 -3.0081 7.2407
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989431152.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:35
Heat of formation + Delta-G solvation = -60.039727 kcal
Electronic energy + Delta-G solvation = -26112.389741 eV
Core-core repulsion = 21920.126770 eV
Total energy + Delta-G solvation = -4192.262971 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.130 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-50.07819 -48.09556 -43.93429 -41.07338 -38.73903 -35.99074 -33.91125 -33.21478
-32.91701 -32.22635 -30.07124 -27.29864 -26.77594 -26.08613 -25.30271 -22.60090
-22.45178 -21.75084 -20.26457 -19.47362 -19.25168 -18.40664 -18.26337 -18.21844
-17.44697 -16.82534 -16.70463 -16.26061 -15.93322 -15.43497 -15.25655 -14.97503
-14.94593 -14.83260 -14.45033 -14.43398 -14.16905 -13.99781 -13.71448 -13.44031
-13.06527 -12.84390 -12.79569 -12.50346 -12.41908 -12.20972 -12.05856 -11.94395
-11.66326 -11.49638 -11.26162 -10.91694 -10.73787 -10.54056 -9.70191 -9.03678
-7.92860 -5.22705 0.30115 0.64699 1.46796 1.50667 1.52655 1.58746
1.86761 2.19270 2.57107 2.67547 3.06616 3.14576 3.38048 3.41262
3.63769 3.86305 3.89054 3.99452 4.03905 4.16832 4.18678 4.32957
4.46053 4.50218 4.51914 4.74510 4.83197 4.90636 5.02249 5.09231
5.16644 5.24572 5.38218 5.42093 5.55156 5.81302 6.27577 6.39687
6.54478 7.01805 7.35558 8.06484 8.31805 9.29861
Molecular weight = 314.13amu
Principal moments of inertia in cm(-1)
A = 0.012311 B = 0.003803 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.786083 B = 7361.072528 C = 9231.032670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.136 3.864
3 H 0.083 0.917
4 C -0.125 4.125
5 C 0.164 3.836
6 H 0.065 0.935
7 N -0.720 5.720
8 C -0.244 4.244
9 H 0.077 0.923
10 C -0.067 4.067
11 N -0.967 5.967
12 Si 0.969 3.031
13 H -0.277 1.277
14 H -0.298 1.298
15 H -0.279 1.279
16 C 0.096 3.904
17 N -0.596 5.596
18 C 0.609 3.391
19 O -0.564 6.564
20 C -0.034 4.034
21 C -0.145 4.145
22 C -0.062 4.062
23 C 0.356 3.644
24 F -0.197 7.197
25 F -0.197 7.197
26 N -0.338 5.338
27 H 0.468 0.532
28 N -0.236 5.236
29 H 0.049 0.951
30 H 0.054 0.946
31 H 0.089 0.911
32 H 0.095 0.905
33 H 0.076 0.924
34 H 0.377 0.623
35 H 0.251 0.749
36 H 0.052 0.948
37 H 0.082 0.918
38 H 0.170 0.830
39 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.332 5.379 18.434 19.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.034 3.966
3 H 0.101 0.899
4 C -0.163 4.163
5 C 0.053 3.947
6 H 0.083 0.917
7 N -0.359 5.359
8 C -0.375 4.375
9 H 0.095 0.905
10 C -0.260 4.260
11 N -0.617 5.617
12 Si 0.798 3.202
13 H -0.203 1.203
14 H -0.224 1.224
15 H -0.205 1.205
16 C -0.030 4.030
17 N -0.328 5.328
18 C 0.396 3.604
19 O -0.443 6.443
20 C -0.192 4.192
21 C -0.174 4.174
22 C -0.189 4.189
23 C 0.301 3.699
24 F -0.178 7.178
25 F -0.179 7.179
26 N -0.057 5.057
27 H 0.318 0.682
28 N -0.075 5.075
29 H 0.069 0.931
30 H 0.073 0.927
31 H 0.107 0.893
32 H 0.114 0.886
33 H 0.095 0.905
34 H 0.210 0.790
35 H 0.060 0.940
36 H 0.070 0.930
37 H 0.100 0.900
38 H 0.187 0.813
39 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges -2.073 5.244 17.849 18.719
hybrid contribution 0.327 -0.553 0.226 0.681
sum -1.746 4.691 18.075 18.755
Atomic orbital electron populations
1.22065 0.93856 1.02013 1.03139 1.21695 0.95259 0.96213 0.83473
0.89910 1.22966 0.97576 0.99527 0.96268 1.21473 0.95996 0.88158
0.89073 0.91697 1.42391 1.08515 1.29016 1.55995 1.19578 0.87916
1.06600 1.23442 0.90485 1.25484 1.00932 0.99233 1.00326 1.69795
1.32686 1.22955 1.36232 0.85283 0.80114 0.77336 0.77429 1.20302
1.22437 1.20538 1.23216 0.94783 0.86709 0.98324 1.48467 1.51097
1.28671 1.04522 1.16727 0.79688 0.83211 0.80769 1.90734 1.41850
1.28047 1.83626 1.21873 1.05309 0.97218 0.94819 1.21753 1.03136
1.01195 0.91285 1.22072 1.05637 0.96989 0.94194 1.19810 0.79682
0.89550 0.80849 1.93055 1.82057 1.56753 1.85957 1.93055 1.43987
1.95780 1.85029 1.43375 1.37857 1.23366 1.01129 0.68193 1.73889
1.14269 1.11846 1.07459 0.93141 0.92720 0.89270 0.88598 0.90535
0.79016 0.93989 0.93007 0.89966 0.81290 0.80220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.09 9.09 71.98 0.65 -3.43 16
2 C 0.14 4.00 3.46 45.34 0.16 4.16 16
3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
4 C -0.12 -3.81 6.12 31.78 0.19 -3.61 16
5 C 0.16 6.15 3.71 46.38 0.17 6.32 16
6 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16
7 N -0.72 -34.06 5.24 -316.38 -1.66 -35.72 16
8 C -0.24 -12.75 9.96 84.03 0.84 -11.92 16
9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16
10 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16
11 N -0.97 -56.66 13.06 21.65 0.28 -56.37 16
12 Si 0.97 43.96 29.55 68.60 2.03 45.99 16
13 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16
14 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16
15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16
16 C 0.10 3.40 5.85 86.86 0.51 3.91 16
17 N -0.60 -19.66 3.06 -791.57 -2.43 -22.09 16
18 C 0.61 20.88 7.65 86.75 0.66 21.54 16
19 O -0.56 -21.28 15.97 -3.94 -0.06 -21.34 16
20 C -0.03 -1.02 6.97 42.46 0.30 -0.73 16
21 C -0.15 -3.61 10.73 22.41 0.24 -3.36 16
22 C -0.06 -1.09 6.66 41.40 0.28 -0.81 16
23 C 0.36 3.90 5.79 71.23 0.41 4.31 16
24 F -0.20 -3.05 17.32 44.97 0.78 -2.27 16
25 F -0.20 -3.07 17.32 44.97 0.78 -2.29 16
26 N -0.34 -5.92 6.83 -47.93 -0.33 -6.25 16
27 H 0.47 4.02 8.96 -220.00 -1.97 2.05 16
28 N -0.24 -6.42 9.35 -48.17 -0.45 -6.87 16
29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
30 H 0.05 1.61 6.90 -2.38 -0.02 1.59 16
31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
32 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16
33 H 0.08 2.39 7.71 -2.39 -0.02 2.37 16
34 H 0.38 19.19 7.76 -92.71 -0.72 18.47 16
35 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16
36 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16
37 H 0.08 2.98 6.20 -2.39 -0.01 2.97 16
38 H 0.17 4.03 8.06 -2.91 -0.02 4.00 16
39 H 0.18 0.02 8.14 -2.39 -0.02 0.00 16
Total: -1.00 -70.63 339.20 2.25 -68.38
By element:
Atomic # 1 Polarization: 27.21 SS G_CDS: -1.57 Total: 25.64 kcal
Atomic # 6 Polarization: 8.30 SS G_CDS: 4.88 Total: 13.18 kcal
Atomic # 7 Polarization: -122.72 SS G_CDS: -4.58 Total: -127.30 kcal
Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal
Atomic # 9 Polarization: -6.11 SS G_CDS: 1.56 Total: -4.55 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal
Total: -70.63 2.25 -68.38 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989431152.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.342 kcal
(2) G-P(sol) polarization free energy of solvation -70.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.286 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds