Wall clock time and date at job start Tue Mar 31 2020 11:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00159 * 2 1 4 4 H 1.48498 * 109.47341 * 269.99825 * 3 2 1 5 5 H 1.48503 * 109.47264 * 30.00474 * 3 2 1 6 6 H 1.48503 * 109.46967 * 150.00198 * 3 2 1 7 7 C 1.38821 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00066 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.46132 * 205.00100 * 10 9 7 12 12 C 1.53198 * 109.31358 * 178.61132 * 11 10 9 13 13 N 1.46926 * 108.77180 * 54.63538 * 12 11 10 14 14 C 1.34776 * 120.62735 * 126.36826 * 13 12 11 15 15 O 1.21642 * 120.00426 * 4.27848 * 14 13 12 16 16 C 1.47083 * 119.99579 * 184.27008 * 14 13 12 17 17 C 1.36050 * 127.14545 * 310.69106 * 16 14 13 18 18 O 1.33804 * 109.85312 * 179.77252 * 17 16 14 19 19 C 1.34910 * 111.34621 * 0.42534 * 18 17 16 20 20 C 1.38977 * 133.11138 * 179.87777 * 19 18 17 21 21 C 1.37837 * 119.97013 * 179.68134 * 20 19 18 22 22 C 1.38685 * 120.65491 * 359.97438 * 21 20 19 23 23 C 1.37844 * 120.20487 * 0.02562 * 22 21 20 24 24 C 1.39110 * 119.62420 * 359.97438 * 23 22 21 25 25 C 1.46930 * 118.73820 * 306.64426 * 13 12 11 26 26 C 1.52760 * 109.01062 * 53.31054 * 25 13 12 27 27 H 0.97003 * 120.00114 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00274 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.44574 * 324.96629 * 10 9 7 30 30 H 1.09003 * 109.49977 * 58.66563 * 11 10 9 31 31 H 1.08993 * 109.49706 * 298.56250 * 11 10 9 32 32 H 1.08998 * 109.58657 * 294.84773 * 12 11 10 33 33 H 1.08993 * 109.70141 * 174.49466 * 12 11 10 34 34 H 1.08000 * 125.07034 * 0.02562 * 17 16 14 35 35 H 1.07995 * 120.01178 * 359.65873 * 20 19 18 36 36 H 1.08002 * 119.67212 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.90058 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.18825 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.58357 * 173.14788 * 25 13 12 40 40 H 1.09003 * 109.58527 * 293.56480 * 25 13 12 41 41 H 1.08991 * 109.56314 * 185.55213 * 26 25 13 42 42 H 1.08996 * 109.35937 * 65.49918 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.1803 -4.7523 -0.6104 12 6 1.9618 -6.0696 -0.6405 13 7 2.4413 -6.3660 0.7163 14 6 2.1725 -7.5529 1.2955 15 8 1.5951 -8.4196 0.6669 16 6 2.5775 -7.8003 2.6876 17 6 3.8017 -7.5797 3.2386 18 8 3.7860 -7.9215 4.5322 19 6 2.5755 -8.3881 4.9022 20 6 2.0669 -8.8597 6.1066 21 6 0.7545 -9.2736 6.1849 22 6 -0.0700 -9.2246 5.0708 23 6 0.4166 -8.7599 3.8678 24 6 1.7396 -8.3397 3.7774 25 6 3.2140 -5.3416 1.4320 26 6 2.4232 -4.0347 1.4368 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.9683 -3.5504 -0.5906 30 1 0.9012 -4.4716 -1.6260 31 1 0.2813 -4.8763 -0.0067 32 1 2.8120 -5.9746 -1.3159 33 1 1.3117 -6.8748 -0.9825 34 1 4.6571 -7.1836 2.7116 35 1 2.6999 -8.9022 6.9806 36 1 0.3644 -9.6396 7.1231 37 1 -1.0963 -9.5524 5.1458 38 1 -0.2258 -8.7215 3.0005 39 1 3.3879 -5.6657 2.4581 40 1 4.1685 -5.1862 0.9291 41 1 3.0288 -3.2433 1.8782 42 1 1.5126 -4.1655 2.0212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997422737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:33 Heat of formation + Delta-G solvation = 12.813165 kcal Electronic energy + Delta-G solvation = -25680.178753 eV Core-core repulsion = 22013.011700 eV Total energy + Delta-G solvation = -3667.167053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.82213 -39.89910 -38.11289 -37.34545 -34.55744 -33.29161 -31.98819 -30.97592 -30.61456 -29.66576 -29.09754 -25.39830 -23.85187 -23.41021 -23.11652 -22.40580 -21.91167 -20.19580 -19.04599 -17.98566 -17.43738 -17.08108 -16.65041 -16.16961 -16.09043 -15.37121 -14.99163 -14.84084 -14.37576 -14.07046 -13.80028 -13.76411 -13.58650 -13.35193 -13.24749 -12.79360 -12.53265 -12.39526 -12.15649 -11.97228 -11.60153 -11.22708 -11.01559 -10.91818 -10.85228 -10.52826 -10.38753 -10.25679 -9.93022 -9.84953 -9.70526 -8.95629 -8.89809 -8.60362 -8.41289 -7.01381 -5.80710 -3.10161 0.57875 1.08244 1.69090 2.40206 2.69766 3.11465 3.40222 3.45239 3.47193 3.50168 4.15725 4.25855 4.54474 4.64430 4.72939 4.83649 5.01534 5.05114 5.11387 5.20300 5.28590 5.30661 5.34798 5.49242 5.52722 5.59046 5.67604 5.86946 5.89801 5.95231 5.96015 6.10444 6.17833 6.21012 6.33095 6.34228 6.34780 6.46607 6.57714 6.82229 6.84374 6.99905 7.41365 7.64918 8.13945 8.37351 9.48631 10.05938 10.40572 11.41804 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.003100 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.044497 B = 9030.139419 C = 9453.726608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.587 3.413 15 O -0.539 6.539 16 C -0.214 4.214 17 C 0.054 3.946 18 O -0.184 6.184 19 C 0.048 3.952 20 C -0.106 4.106 21 C -0.094 4.094 22 C -0.132 4.132 23 C -0.063 4.063 24 C -0.094 4.094 25 C 0.097 3.903 26 C -0.151 4.151 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.219 0.781 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -19.047 9.833 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.004 4.004 13 N -0.330 5.330 14 C 0.375 3.625 15 O -0.417 6.417 16 C -0.219 4.219 17 C -0.013 4.013 18 O -0.083 6.083 19 C 0.002 3.998 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.150 4.150 23 C -0.081 4.081 24 C -0.095 4.095 25 C -0.026 4.026 26 C -0.192 4.192 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.235 0.765 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.847 -19.309 9.662 22.369 hybrid contribution 0.127 1.184 -0.070 1.193 sum 5.974 -18.124 9.592 21.359 Atomic orbital electron populations 1.69662 1.05142 1.25715 1.57462 1.24756 0.95500 0.97727 1.02906 0.86205 0.78642 0.83887 0.77526 1.21710 1.21786 1.20754 1.19225 0.90955 0.84080 1.42954 0.91160 1.42433 1.05822 0.99687 1.88478 1.20164 0.94466 0.86114 0.92359 1.22219 0.99239 0.94033 1.02359 1.21659 0.98898 0.98164 0.81717 1.48072 1.53884 1.14203 1.16867 1.17162 0.78926 0.82017 0.84357 1.90782 1.42644 1.44127 1.64171 1.20928 0.95136 1.10612 0.95205 1.24445 0.98841 0.97063 0.80956 1.83852 1.32011 1.66718 1.25767 1.19571 0.83063 1.01286 0.95888 1.19936 0.96002 1.02288 0.94177 1.20945 0.92243 0.98907 0.99088 1.21093 1.00383 1.01207 0.92309 1.20617 0.93079 0.96024 0.98363 1.19418 0.95297 1.03121 0.91694 1.22018 0.94794 0.88993 0.96770 1.22590 1.00177 0.94566 1.01865 0.93468 0.78246 0.93344 0.90353 0.91809 0.91277 0.89243 0.76512 0.84846 0.84596 0.85015 0.85091 0.90309 0.91105 0.90514 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.56 5.12 -53.38 -0.27 -17.83 16 10 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 11 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 12 C 0.12 1.66 6.42 -3.71 -0.02 1.63 16 13 N -0.60 -8.37 2.98 -174.42 -0.52 -8.89 16 14 C 0.59 8.94 7.61 -12.67 -0.10 8.84 16 15 O -0.54 -9.79 16.54 5.24 0.09 -9.71 16 16 C -0.21 -2.86 5.36 -103.25 -0.55 -3.42 16 17 C 0.05 0.57 9.65 29.95 0.29 0.86 16 18 O -0.18 -2.08 10.53 5.33 0.06 -2.02 16 19 C 0.05 0.58 7.39 -38.56 -0.28 0.29 16 20 C -0.11 -1.00 10.06 -39.45 -0.40 -1.40 16 21 C -0.09 -0.79 10.01 -39.56 -0.40 -1.18 16 22 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 23 C -0.06 -0.77 10.09 -39.40 -0.40 -1.17 16 24 C -0.09 -1.26 6.39 -104.98 -0.67 -1.93 16 25 C 0.10 1.23 5.83 -3.93 -0.02 1.21 16 26 C -0.15 -2.49 5.64 -26.83 -0.15 -2.65 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 29 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.30 7.03 -51.93 -0.36 0.93 16 34 H 0.22 1.41 7.50 -52.49 -0.39 1.02 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.08 0.88 4.56 -51.93 -0.24 0.64 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -33.20 349.48 -8.87 -42.07 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.51 Total: 8.15 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.68 Total: -6.89 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.07 Total: -53.79 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.14 Total: -11.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.20 -8.87 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997422737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.883 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds