Wall clock time and date at job start Tue Mar 31 2020 11:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00159 * 2 1 4 4 H 1.48498 * 109.47341 * 269.99825 * 3 2 1 5 5 H 1.48503 * 109.47264 * 30.00474 * 3 2 1 6 6 H 1.48503 * 109.46967 * 150.00198 * 3 2 1 7 7 C 1.38821 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00066 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.46132 * 205.00100 * 10 9 7 12 12 C 1.53198 * 109.31358 * 178.61132 * 11 10 9 13 13 N 1.46926 * 108.77180 * 54.63538 * 12 11 10 14 14 C 1.34776 * 120.62735 * 126.36826 * 13 12 11 15 15 O 1.21642 * 120.00426 * 4.27848 * 14 13 12 16 16 C 1.47083 * 119.99579 * 184.27008 * 14 13 12 17 17 C 1.36050 * 127.14545 * 310.69106 * 16 14 13 18 18 O 1.33804 * 109.85312 * 179.77252 * 17 16 14 19 19 C 1.34910 * 111.34621 * 0.42534 * 18 17 16 20 20 C 1.38977 * 133.11138 * 179.87777 * 19 18 17 21 21 C 1.37837 * 119.97013 * 179.68134 * 20 19 18 22 22 C 1.38685 * 120.65491 * 359.97438 * 21 20 19 23 23 C 1.37844 * 120.20487 * 0.02562 * 22 21 20 24 24 C 1.39110 * 119.62420 * 359.97438 * 23 22 21 25 25 C 1.46930 * 118.73820 * 306.64426 * 13 12 11 26 26 C 1.52760 * 109.01062 * 53.31054 * 25 13 12 27 27 H 0.97003 * 120.00114 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00274 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.44574 * 324.96629 * 10 9 7 30 30 H 1.09003 * 109.49977 * 58.66563 * 11 10 9 31 31 H 1.08993 * 109.49706 * 298.56250 * 11 10 9 32 32 H 1.08998 * 109.58657 * 294.84773 * 12 11 10 33 33 H 1.08993 * 109.70141 * 174.49466 * 12 11 10 34 34 H 1.08000 * 125.07034 * 0.02562 * 17 16 14 35 35 H 1.07995 * 120.01178 * 359.65873 * 20 19 18 36 36 H 1.08002 * 119.67212 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.90058 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.18825 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.58357 * 173.14788 * 25 13 12 40 40 H 1.09003 * 109.58527 * 293.56480 * 25 13 12 41 41 H 1.08991 * 109.56314 * 185.55213 * 26 25 13 42 42 H 1.08996 * 109.35937 * 65.49918 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.1803 -4.7523 -0.6104 12 6 1.9618 -6.0696 -0.6405 13 7 2.4413 -6.3660 0.7163 14 6 2.1725 -7.5529 1.2955 15 8 1.5951 -8.4196 0.6669 16 6 2.5775 -7.8003 2.6876 17 6 3.8017 -7.5797 3.2386 18 8 3.7860 -7.9215 4.5322 19 6 2.5755 -8.3881 4.9022 20 6 2.0669 -8.8597 6.1066 21 6 0.7545 -9.2736 6.1849 22 6 -0.0700 -9.2246 5.0708 23 6 0.4166 -8.7599 3.8678 24 6 1.7396 -8.3397 3.7774 25 6 3.2140 -5.3416 1.4320 26 6 2.4232 -4.0347 1.4368 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.9683 -3.5504 -0.5906 30 1 0.9012 -4.4716 -1.6260 31 1 0.2813 -4.8763 -0.0067 32 1 2.8120 -5.9746 -1.3159 33 1 1.3117 -6.8748 -0.9825 34 1 4.6571 -7.1836 2.7116 35 1 2.6999 -8.9022 6.9806 36 1 0.3644 -9.6396 7.1231 37 1 -1.0963 -9.5524 5.1458 38 1 -0.2258 -8.7215 3.0005 39 1 3.3879 -5.6657 2.4581 40 1 4.1685 -5.1862 0.9291 41 1 3.0288 -3.2433 1.8782 42 1 1.5126 -4.1655 2.0212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997422737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:31 Heat of formation + Delta-G solvation = -7.815151 kcal Electronic energy + Delta-G solvation = -25681.073264 eV Core-core repulsion = 22013.011700 eV Total energy + Delta-G solvation = -3668.061564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.66256 -41.08880 -38.90945 -38.68850 -36.18581 -34.38189 -33.59485 -32.15344 -31.43343 -31.07707 -30.26791 -26.88889 -25.20985 -24.46377 -24.32843 -23.23021 -23.19871 -21.49837 -20.19499 -19.12631 -18.87903 -18.26811 -17.64432 -17.13882 -16.99724 -16.67918 -16.30169 -16.13096 -15.49806 -15.39799 -15.18967 -15.01148 -14.85815 -14.64155 -14.37998 -13.94958 -13.62152 -13.37245 -13.33106 -13.12538 -12.87796 -12.84013 -12.64818 -12.24359 -12.17126 -12.01344 -12.00750 -11.71240 -11.39017 -11.30563 -11.08203 -10.84545 -9.78929 -9.69673 -9.27004 -9.00401 -7.92822 -5.21858 -0.22421 0.28044 0.78767 1.48877 1.50232 1.53805 1.58398 1.66904 2.05422 2.57358 2.69543 3.29475 3.39498 3.40800 3.76931 3.82319 3.85371 3.93775 4.07621 4.11251 4.16409 4.28933 4.32301 4.37729 4.38431 4.51374 4.59334 4.72449 4.76452 4.80491 4.84157 4.98751 5.04504 5.08214 5.18019 5.27134 5.33929 5.45165 5.47108 5.53585 5.56346 5.58404 6.02547 6.27096 6.29225 6.99267 7.34455 8.09982 8.32907 9.31004 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.003100 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.044497 B = 9030.139419 C = 9453.726608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.129 4.129 12 C 0.124 3.876 13 N -0.596 5.596 14 C 0.589 3.411 15 O -0.579 6.579 16 C -0.256 4.256 17 C 0.083 3.917 18 O -0.182 6.182 19 C 0.029 3.971 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.099 4.099 24 C -0.123 4.123 25 C 0.106 3.894 26 C -0.141 4.141 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -19.886 11.529 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.378 5.378 10 C 0.066 3.934 11 C -0.168 4.168 12 C 0.002 3.998 13 N -0.328 5.328 14 C 0.379 3.621 15 O -0.460 6.460 16 C -0.261 4.261 17 C 0.016 3.984 18 O -0.082 6.082 19 C -0.018 4.018 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.016 4.016 26 C -0.182 4.182 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.275 0.725 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.491 -20.179 11.374 24.671 hybrid contribution -0.702 1.345 -0.548 1.613 sum 7.789 -18.833 10.826 23.077 Atomic orbital electron populations 1.69832 1.06786 1.25902 1.59919 1.25574 0.96290 1.01179 1.04100 0.85160 0.77825 0.79591 0.77327 1.21606 1.22744 1.18978 1.19658 0.91591 0.84961 1.40393 0.89994 1.42686 1.05377 1.01140 1.88613 1.20427 0.94497 0.84546 0.93961 1.22076 0.98460 0.94628 1.01615 1.21592 0.99465 0.96269 0.82503 1.48118 1.53734 1.14178 1.16766 1.17431 0.78046 0.81719 0.84912 1.90749 1.44501 1.45490 1.65255 1.20884 0.96876 1.13827 0.94465 1.25130 0.98655 0.94224 0.80409 1.83867 1.31770 1.66495 1.26031 1.19926 0.83012 1.02432 0.96390 1.20431 0.96743 1.00754 0.94176 1.21419 0.91654 0.97635 0.99995 1.21449 1.01690 0.99557 0.91632 1.20702 0.93192 0.98605 0.99198 1.19722 0.96048 1.04013 0.92610 1.22078 0.94870 0.86258 0.98441 1.22372 0.99657 0.96689 0.99461 0.94228 0.79991 0.92473 0.90524 0.93718 0.88719 0.89890 0.72511 0.82003 0.80762 0.82754 0.86992 0.88339 0.87764 0.91146 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.23 -12.53 9.93 84.04 0.83 -11.69 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -36.30 5.12 -322.80 -1.65 -37.96 16 10 C 0.17 6.40 2.73 45.02 0.12 6.52 16 11 C -0.13 -4.21 5.55 30.67 0.17 -4.04 16 12 C 0.12 3.39 6.42 86.36 0.55 3.94 16 13 N -0.60 -16.02 2.98 -823.98 -2.45 -18.47 16 14 C 0.59 17.92 7.61 86.56 0.66 18.58 16 15 O -0.58 -21.72 16.54 -4.17 -0.07 -21.79 16 16 C -0.26 -6.70 5.36 -18.97 -0.10 -6.80 16 17 C 0.08 1.53 9.65 67.31 0.65 2.18 16 18 O -0.18 -3.70 10.53 -3.83 -0.04 -3.74 16 19 C 0.03 0.64 7.39 22.93 0.17 0.81 16 20 C -0.10 -1.68 10.06 22.35 0.22 -1.45 16 21 C -0.09 -1.25 10.01 22.28 0.22 -1.03 16 22 C -0.13 -2.26 10.04 22.28 0.22 -2.04 16 23 C -0.10 -2.53 10.09 22.39 0.23 -2.30 16 24 C -0.12 -3.31 6.39 -20.10 -0.13 -3.44 16 25 C 0.11 2.40 5.83 86.22 0.50 2.91 16 26 C -0.14 -4.53 5.64 30.53 0.17 -4.36 16 27 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.37 20.04 7.80 -92.70 -0.72 19.32 16 29 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.42 7.03 -2.39 -0.02 2.41 16 34 H 0.26 2.21 7.50 -2.91 -0.02 2.19 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.10 1.90 4.56 -2.39 -0.01 1.89 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.24 349.48 3.39 -71.85 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.33 Total: 28.33 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.97 Total: -6.24 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.82 Total: -115.69 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.11 Total: -25.53 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -75.24 3.39 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997422737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -75.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds