Wall clock time and date at job start Tue Mar 31 2020 11:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48498 * 109.47174 * 272.94234 * 3 2 1 5 5 H 1.48505 * 109.47074 * 32.94699 * 3 2 1 6 6 H 1.48506 * 109.46875 * 152.94300 * 3 2 1 7 7 C 1.38810 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99885 * 339.34138 * 7 2 1 9 9 N 1.36938 * 119.99892 * 159.34145 * 7 2 1 10 10 C 1.46926 * 120.63364 * 332.63363 * 9 7 2 11 11 C 1.53192 * 108.77361 * 233.58405 * 10 9 7 12 12 C 1.53035 * 109.31478 * 305.36230 * 11 10 9 13 13 N 1.46501 * 109.46158 * 181.38743 * 12 11 10 14 14 C 1.34773 * 119.99728 * 154.97307 * 13 12 11 15 15 O 1.21569 * 120.00437 * 0.02562 * 14 13 12 16 16 C 1.47707 * 119.99724 * 179.97438 * 14 13 12 17 17 C 1.40105 * 120.02202 * 0.02562 * 16 14 13 18 18 C 1.36430 * 120.68459 * 180.02562 * 17 16 14 19 19 C 1.39165 * 120.27335 * 359.95856 * 18 17 16 20 20 O 1.34741 * 133.25284 * 180.02562 * 19 18 17 21 21 C 1.34439 * 110.95843 * 179.97438 * 20 19 18 22 22 C 1.33953 * 110.19898 * 359.97438 * 21 20 19 23 23 C 1.40673 * 119.54355 * 0.02562 * 19 18 17 24 24 C 1.39084 * 120.20511 * 0.02814 * 23 19 18 25 25 C 1.53043 * 109.52736 * 61.37243 * 12 11 10 26 26 C 1.46927 * 120.62826 * 152.60265 * 9 7 2 27 27 H 0.97003 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58942 * 113.79697 * 10 9 7 29 29 H 1.08998 * 109.70135 * 353.44051 * 10 9 7 30 30 H 1.09003 * 109.49726 * 185.40933 * 11 10 9 31 31 H 1.09002 * 109.52522 * 65.33368 * 11 10 9 32 32 H 1.09000 * 109.45882 * 301.36157 * 12 11 10 33 33 H 0.96999 * 119.99516 * 334.97275 * 13 12 11 34 34 H 1.07996 * 119.65992 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.86645 * 179.97438 * 18 17 16 36 36 H 1.08002 * 124.90151 * 179.97438 * 21 20 19 37 37 H 1.08002 * 126.92869 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.33511 * 179.97438 * 24 23 19 39 39 H 1.08999 * 109.49925 * 58.57714 * 25 12 11 40 40 H 1.09000 * 109.50053 * 178.67701 * 25 12 11 41 41 H 1.08999 * 109.59191 * 246.20231 * 26 9 7 42 42 H 1.08996 * 109.58475 * 6.49167 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6339 0.7615 6 1 3.5775 1.4230 0.6369 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4189 10 6 3.8173 -0.2583 -1.3891 11 6 4.4622 -1.0076 -2.5593 12 6 5.5289 -1.9641 -2.0215 13 7 6.1708 -2.6583 -3.1406 14 6 7.4214 -3.1421 -3.0053 15 8 8.0167 -3.0029 -1.9545 16 6 8.0683 -3.8426 -4.1334 17 6 7.3825 -4.0038 -5.3444 18 6 7.9669 -4.6489 -6.3949 19 6 9.2573 -5.1564 -6.2766 20 8 10.0692 -5.8211 -7.1219 21 6 11.2458 -6.1037 -6.5361 22 6 11.2611 -5.6375 -5.2804 23 6 9.9557 -5.0002 -5.0655 24 6 9.3600 -4.3435 -3.9939 25 6 4.8750 -2.9898 -1.0928 26 6 4.2351 -2.2629 0.0943 27 1 -0.4850 0.8401 0.0004 28 1 4.5597 0.3805 -0.9106 29 1 2.9923 0.3521 -1.7562 30 1 4.9246 -0.2919 -3.2390 31 1 3.6999 -1.5755 -3.0926 32 1 6.2779 -1.3983 -1.4675 33 1 5.6956 -2.7697 -3.9789 34 1 6.3809 -3.6133 -5.4474 35 1 7.4260 -4.7661 -7.3223 36 1 12.0610 -6.6305 -7.0097 37 1 12.0699 -5.7159 -4.5690 38 1 9.8941 -4.2228 -3.0630 39 1 4.1084 -3.5389 -1.6395 40 1 5.6313 -3.6851 -0.7286 41 1 5.0116 -1.7877 0.6936 42 1 3.6845 -2.9757 0.7081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002887031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:04 Heat of formation + Delta-G solvation = -0.964133 kcal Electronic energy + Delta-G solvation = -25203.141483 eV Core-core repulsion = 21535.377001 eV Total energy + Delta-G solvation = -3667.764482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.47206 -41.24405 -39.41822 -38.30378 -36.13965 -34.22010 -33.79678 -32.30993 -31.98054 -31.25883 -30.26595 -27.03537 -25.26647 -24.43317 -23.74492 -23.38152 -22.34439 -21.56968 -21.21360 -19.26686 -18.67810 -18.37518 -17.78658 -17.28724 -17.15277 -16.87364 -16.08020 -15.92670 -15.71441 -15.34513 -15.22789 -14.96180 -14.71908 -14.53798 -14.25769 -14.15489 -13.95940 -13.69730 -13.64398 -13.48320 -13.17763 -12.59479 -12.55732 -12.28215 -12.05490 -12.02928 -11.79842 -11.56893 -11.37833 -11.28809 -11.10916 -10.69322 -10.15938 -9.70728 -9.30507 -8.96801 -8.15695 -5.48180 -0.28723 -0.07108 1.29909 1.39751 1.43626 1.52177 1.76044 1.78119 2.05617 2.41940 2.73216 3.06149 3.31635 3.44255 3.57939 3.66544 3.77931 3.96784 3.98290 4.15981 4.19614 4.25342 4.31478 4.39713 4.48509 4.61739 4.62766 4.68634 4.84633 4.85527 4.91943 5.01366 5.06359 5.08030 5.11421 5.16285 5.19110 5.38617 5.39059 5.42353 5.50405 5.87096 6.07417 6.13259 6.52369 6.90845 7.17180 7.61513 8.02019 9.04029 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.036896 B = 0.002508 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.707428 B =11163.793584 C =11343.221745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.312 1.312 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.120 3.880 11 C -0.128 4.128 12 C 0.160 3.840 13 N -0.704 5.704 14 C 0.560 3.440 15 O -0.580 6.580 16 C -0.161 4.161 17 C -0.060 4.060 18 C -0.106 4.106 19 C 0.055 3.945 20 O -0.201 6.201 21 C 0.019 3.981 22 C -0.223 4.223 23 C -0.161 4.161 24 C -0.021 4.021 25 C -0.129 4.129 26 C 0.147 3.853 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.255 0.745 37 H 0.179 0.821 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.085 -11.342 -18.312 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.344 5.344 10 C -0.005 4.005 11 C -0.167 4.167 12 C 0.055 3.945 13 N -0.355 5.355 14 C 0.349 3.651 15 O -0.461 6.461 16 C -0.164 4.164 17 C -0.078 4.078 18 C -0.124 4.124 19 C 0.007 3.993 20 O -0.102 6.102 21 C -0.045 4.045 22 C -0.242 4.242 23 C -0.162 4.162 24 C -0.041 4.041 25 C -0.169 4.169 26 C 0.021 3.979 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.184 0.816 35 H 0.184 0.816 36 H 0.270 0.730 37 H 0.196 0.804 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.272 -11.223 -17.829 31.391 hybrid contribution -0.234 0.844 0.485 1.001 sum 23.037 -10.379 -17.344 30.647 Atomic orbital electron populations 1.69960 1.07341 1.27229 1.55615 1.25886 0.95831 1.00824 1.00304 0.85956 0.78538 0.80319 0.77895 1.19371 1.24111 1.19070 1.18855 0.86550 0.93612 1.38734 0.92920 1.44517 1.07776 1.34480 1.47604 1.21379 0.96934 0.92046 0.90133 1.22168 0.97515 0.98773 0.98247 1.20721 0.93813 0.92700 0.87261 1.45904 1.14972 1.57437 1.17227 1.18444 0.81389 0.78036 0.87215 1.90759 1.65114 1.59730 1.30518 1.19736 0.96074 1.05433 0.95176 1.21040 1.00514 0.96151 0.90097 1.19922 0.90670 1.00184 1.01665 1.20206 0.93816 0.96701 0.88595 1.84020 1.24369 1.61448 1.40399 1.24866 0.86935 0.99743 0.92936 1.22899 0.97229 1.04950 0.99080 1.20213 0.96846 1.04260 0.94920 1.20683 0.93155 0.92573 0.97647 1.22208 0.99294 0.97953 0.97407 1.21006 0.91797 0.90716 0.94337 0.92909 0.95079 0.92220 0.89035 0.90544 0.91170 0.74814 0.81553 0.81582 0.72966 0.80396 0.85098 0.91619 0.91796 0.95341 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.60 13.97 21.65 0.30 -59.29 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 3 Si 0.94 46.14 24.34 68.60 1.67 47.81 16 4 H -0.27 -12.04 6.62 99.48 0.66 -11.39 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.27 -12.67 6.63 99.48 0.66 -12.01 16 7 C -0.25 -13.99 10.04 84.03 0.84 -13.15 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 N -0.62 -28.94 2.77 -699.09 -1.94 -30.87 16 10 C 0.12 4.92 4.20 86.36 0.36 5.28 16 11 C -0.13 -3.88 5.55 30.67 0.17 -3.71 16 12 C 0.16 4.79 2.42 45.02 0.11 4.90 16 13 N -0.70 -16.72 5.03 -445.42 -2.24 -18.96 16 14 C 0.56 15.29 7.73 86.75 0.67 15.96 16 15 O -0.58 -20.60 16.00 -3.93 -0.06 -20.66 16 16 C -0.16 -3.55 5.87 -20.08 -0.12 -3.67 16 17 C -0.06 -0.92 9.46 22.30 0.21 -0.71 16 18 C -0.11 -1.55 9.99 22.07 0.22 -1.33 16 19 C 0.06 0.99 7.42 23.09 0.17 1.17 16 20 O -0.20 -3.14 10.57 -8.14 -0.09 -3.23 16 21 C 0.02 0.19 11.95 66.84 0.80 0.98 16 22 C -0.22 -3.05 11.14 23.55 0.26 -2.79 16 23 C -0.16 -3.19 6.39 -20.23 -0.13 -3.32 16 24 C -0.02 -0.49 9.65 22.71 0.22 -0.27 16 25 C -0.13 -4.25 5.65 30.68 0.17 -4.08 16 26 C 0.15 5.86 6.52 86.37 0.56 6.43 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 28 H 0.03 1.26 7.07 -2.39 -0.02 1.24 16 29 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 33 H 0.41 6.94 6.61 -92.71 -0.61 6.32 16 34 H 0.17 1.52 6.37 -2.91 -0.02 1.50 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.25 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.13 3.14 7.65 -2.91 -0.02 3.12 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -76.08 341.20 2.97 -73.12 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.35 Total: 11.90 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 4.97 Total: 0.19 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -3.87 Total: -109.13 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.15 Total: -23.89 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -76.08 2.97 -73.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002887031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.155 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds