Wall clock time and date at job start Tue Mar 31 2020 11:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48502 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47183 * 299.99457 * 3 2 1 6 6 H 1.48500 * 109.47259 * 59.99542 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00158 * 197.38029 * 7 2 1 9 9 N 1.36941 * 120.00186 * 17.37867 * 7 2 1 10 10 C 1.46927 * 120.62489 * 27.65721 * 9 7 2 11 11 C 1.53200 * 108.76111 * 126.40559 * 10 9 7 12 12 C 1.53039 * 109.31092 * 54.65490 * 11 10 9 13 13 C 1.53040 * 109.53022 * 298.61238 * 12 11 10 14 14 H 1.09009 * 109.49705 * 301.42526 * 13 12 11 15 15 N 1.46496 * 109.50324 * 181.32578 * 13 12 11 16 16 C 1.34772 * 120.00306 * 155.00037 * 15 13 12 17 17 O 1.21576 * 120.00102 * 359.97438 * 16 15 13 18 18 C 1.47702 * 120.00263 * 180.02562 * 16 15 13 19 19 C 1.40103 * 120.02164 * 359.72032 * 18 16 15 20 20 C 1.36435 * 120.68375 * 179.72980 * 19 18 16 21 21 C 1.39155 * 120.27537 * 0.53261 * 20 19 18 22 22 O 1.34745 * 133.25592 * 179.75346 * 21 20 19 23 23 C 1.34447 * 110.95679 * 179.97438 * 22 21 20 24 24 C 1.33953 * 110.19904 * 0.02562 * 23 22 21 25 25 C 1.40678 * 119.54071 * 359.75468 * 21 20 19 26 26 C 1.39084 * 120.20583 * 359.97438 * 25 21 20 27 27 C 1.46914 * 120.63145 * 207.68085 * 9 7 2 28 28 H 0.96998 * 120.00359 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58710 * 246.19755 * 10 9 7 30 30 H 1.08998 * 109.58751 * 6.62827 * 10 9 7 31 31 H 1.08994 * 109.50776 * 294.69361 * 11 10 9 32 32 H 1.08994 * 109.48272 * 174.59818 * 11 10 9 33 33 H 1.09000 * 109.45878 * 178.59534 * 12 11 10 34 34 H 1.09001 * 109.46168 * 58.62753 * 12 11 10 35 35 H 0.96997 * 119.99243 * 335.00030 * 15 13 12 36 36 H 1.08000 * 119.65984 * 359.97438 * 19 18 16 37 37 H 1.08001 * 119.86158 * 180.27926 * 20 19 18 38 38 H 1.07998 * 124.89856 * 180.02562 * 23 22 21 39 39 H 1.07999 * 126.92761 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.33275 * 180.02562 * 26 25 21 41 41 H 1.09007 * 109.58897 * 113.80283 * 27 9 7 42 42 H 1.08997 * 109.59275 * 353.37370 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2799 9 7 1.3726 -2.3612 -0.3532 10 6 0.2281 -2.3347 -1.2741 11 6 0.5014 -3.3049 -2.4278 12 6 0.8190 -4.6900 -1.8598 13 6 2.0746 -4.6101 -0.9885 14 1 2.9086 -4.2401 -1.5852 15 7 2.3962 -5.9423 -0.4707 16 6 3.6632 -6.2422 -0.1225 17 8 4.5393 -5.4073 -0.2384 18 6 3.9875 -7.5854 0.3991 19 6 2.9774 -8.5464 0.5375 20 6 3.2628 -9.7931 1.0126 21 6 4.5643 -10.1238 1.3776 22 8 5.1290 -11.2440 1.8692 23 6 6.4478 -11.0715 2.0654 24 6 6.8095 -9.8310 1.7125 25 6 5.5857 -9.1651 1.2486 26 6 5.2963 -7.8958 0.7590 27 6 1.8195 -3.6546 0.1814 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6741 -2.6412 -0.7447 30 1 0.0988 -1.3264 -1.6675 31 1 1.3502 -2.9473 -3.0107 32 1 -0.3792 -3.3670 -3.0670 33 1 0.9895 -5.3882 -2.6793 34 1 -0.0202 -5.0363 -1.2565 35 1 1.6972 -6.6084 -0.3785 36 1 1.9630 -8.2990 0.2615 37 1 2.4746 -10.5250 1.1096 38 1 7.1187 -11.8245 2.4517 39 1 7.8014 -9.4063 1.7591 40 1 6.0789 -7.1584 0.6587 41 1 1.0470 -4.0687 0.8296 42 1 2.7401 -3.5172 0.7485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007397223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:36 Heat of formation + Delta-G solvation = -5.264433 kcal Electronic energy + Delta-G solvation = -25272.668507 eV Core-core repulsion = 21604.717550 eV Total energy + Delta-G solvation = -3667.950957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.46448 -41.20214 -39.24436 -38.25405 -36.01308 -34.29526 -33.78139 -32.34667 -31.90190 -30.67847 -29.77272 -27.26999 -25.53186 -23.91470 -23.72004 -23.39322 -22.33766 -21.54960 -21.03193 -19.01033 -18.72444 -18.41982 -17.67860 -17.14645 -17.06713 -16.77975 -16.18867 -15.87156 -15.48762 -15.24234 -15.22260 -14.85387 -14.81664 -14.24938 -14.22286 -14.00309 -13.81368 -13.64246 -13.39020 -13.20792 -13.03549 -12.77760 -12.55598 -12.11973 -12.05544 -11.97730 -11.76699 -11.58746 -11.31428 -11.28308 -11.03113 -10.63361 -10.20663 -9.71750 -9.30092 -8.70532 -7.91841 -5.37016 -0.28332 -0.06349 1.40154 1.42572 1.44211 1.55976 1.76766 1.78271 2.05852 2.49513 2.73960 3.22091 3.44384 3.56864 3.64616 3.76971 3.89009 3.98868 4.11548 4.17102 4.22516 4.26257 4.40872 4.48225 4.56656 4.61727 4.81293 4.85464 4.92127 5.01744 5.06232 5.10127 5.13005 5.15632 5.22845 5.27717 5.38344 5.42485 5.47794 5.55732 5.62708 5.76739 6.07782 6.35755 6.55081 7.11702 7.21746 7.81497 8.30943 9.13891 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.002722 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.930423 B =10283.200176 C =11024.958848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.044 4.044 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.267 4.267 8 H 0.051 0.949 9 N -0.608 5.608 10 C 0.170 3.830 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.141 3.859 14 H 0.057 0.943 15 N -0.699 5.699 16 C 0.555 3.445 17 O -0.585 6.585 18 C -0.159 4.159 19 C -0.058 4.058 20 C -0.103 4.103 21 C 0.056 3.944 22 O -0.199 6.199 23 C 0.021 3.979 24 C -0.225 4.225 25 C -0.162 4.162 26 C -0.025 4.025 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.007 0.993 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.256 0.744 39 H 0.177 0.823 40 H 0.125 0.875 41 H 0.024 0.976 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -26.713 0.383 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.240 4.240 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.397 4.397 8 H 0.069 0.931 9 N -0.331 5.331 10 C 0.045 3.955 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.035 3.965 14 H 0.076 0.924 15 N -0.351 5.351 16 C 0.344 3.656 17 O -0.467 6.467 18 C -0.163 4.163 19 C -0.076 4.076 20 C -0.121 4.121 21 C 0.008 3.992 22 O -0.100 6.100 23 C -0.042 4.042 24 C -0.244 4.244 25 C -0.163 4.163 26 C -0.045 4.045 27 C 0.018 3.982 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.272 0.728 39 H 0.194 0.806 40 H 0.143 0.857 41 H 0.041 0.959 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.361 -26.219 0.353 26.982 hybrid contribution 0.473 1.416 0.293 1.521 sum 6.833 -24.803 0.647 25.736 Atomic orbital electron populations 1.70167 1.06323 1.25964 1.54958 1.25709 0.96145 1.01171 1.00961 0.85253 0.78312 0.79922 0.77243 1.19990 1.20873 1.21430 1.19416 0.92556 0.86413 1.41360 0.93084 1.44239 1.36074 1.01472 1.51358 1.20749 0.87516 0.98250 0.88982 1.22018 1.01416 0.95260 0.98237 1.21623 0.95729 0.97726 0.99118 1.21303 0.98180 0.81684 0.95362 0.92437 1.45758 1.09252 1.15039 1.65090 1.18585 0.82643 0.87413 0.76955 1.90786 1.48551 1.51330 1.55991 1.19721 0.95209 0.93957 1.07367 1.21054 0.99582 0.90971 0.96038 1.19937 0.92555 0.97864 1.01750 1.20204 0.95406 0.84893 0.98703 1.84020 1.23133 1.34877 1.67995 1.24860 0.80920 0.98955 0.99495 1.22895 0.98822 0.95257 1.07440 1.20199 0.95465 0.94979 1.05620 1.20668 0.95929 0.94580 0.93277 1.21215 0.96392 0.86543 0.94087 0.93815 0.97483 0.92702 0.93500 0.89522 0.89256 0.90202 0.74576 0.81194 0.81129 0.72833 0.80597 0.85656 0.95857 0.95467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 2 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 3 Si 0.96 46.85 29.59 68.60 2.03 48.88 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.27 -15.79 9.59 84.03 0.81 -14.98 16 8 H 0.05 3.10 7.89 -2.91 -0.02 3.08 16 9 N -0.61 -32.14 2.99 -699.09 -2.09 -34.23 16 10 C 0.17 8.16 5.31 86.37 0.46 8.62 16 11 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 12 C -0.10 -3.02 5.35 30.62 0.16 -2.86 16 13 C 0.14 5.03 2.60 45.07 0.12 5.15 16 14 H 0.06 2.44 7.58 -2.38 -0.02 2.42 16 15 N -0.70 -19.49 5.03 -445.16 -2.24 -21.73 16 16 C 0.56 18.02 7.74 86.74 0.67 18.69 16 17 O -0.59 -25.08 16.00 -3.95 -0.06 -25.14 16 18 C -0.16 -4.05 5.87 -20.08 -0.12 -4.17 16 19 C -0.06 -1.00 9.46 22.30 0.21 -0.78 16 20 C -0.10 -1.61 9.99 22.07 0.22 -1.38 16 21 C 0.06 1.10 7.42 23.09 0.17 1.27 16 22 O -0.20 -3.33 10.57 -8.26 -0.09 -3.42 16 23 C 0.02 0.24 11.95 66.84 0.80 1.04 16 24 C -0.23 -3.58 11.14 23.55 0.26 -3.32 16 25 C -0.16 -3.60 6.39 -20.23 -0.13 -3.73 16 26 C -0.03 -0.67 9.64 22.71 0.22 -0.45 16 27 C 0.14 6.54 6.09 86.37 0.53 7.07 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 3.00 6.04 -2.39 -0.01 2.98 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.42 7.79 6.61 -92.71 -0.61 7.18 16 36 H 0.17 1.71 6.37 -2.91 -0.02 1.69 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.26 0.18 8.06 -2.91 -0.02 0.15 16 39 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.13 3.59 7.65 -2.91 -0.02 3.57 16 41 H 0.02 1.02 8.14 -2.38 -0.02 1.01 16 42 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 Total: -1.00 -79.45 347.64 3.21 -76.24 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.43 Total: 11.18 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.98 Total: 3.57 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -4.09 Total: -111.33 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.15 Total: -28.55 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -79.45 3.21 -76.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007397223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.978 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds