Wall clock time and date at job start Tue Mar 31 2020 10:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35358 * 126.38990 * 2 1 4 4 C 1.41503 * 105.50550 * 179.97438 * 3 2 1 5 5 C 1.47713 * 126.51950 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00031 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00188 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00244 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.88347 * 328.87417 * 8 7 5 10 10 C 1.55154 * 111.00325 * 205.00052 * 8 7 5 11 11 C 1.54334 * 102.94217 * 206.41962 * 10 8 7 12 12 N 1.47020 * 107.26790 * 22.19151 * 11 10 8 13 13 C 1.36935 * 125.64918 * 181.02250 * 12 11 10 14 14 H 1.07993 * 120.00251 * 168.93127 * 13 12 11 15 15 C 1.38813 * 119.99633 * 348.93623 * 13 12 11 16 16 N 1.31619 * 119.99946 * 165.68026 * 15 13 12 17 17 Si 1.86792 * 120.00267 * 345.67982 * 15 13 12 18 18 H 1.48501 * 109.47512 * 185.28256 * 17 15 13 19 19 H 1.48508 * 109.47127 * 305.28168 * 17 15 13 20 20 H 1.48495 * 109.47289 * 65.27833 * 17 15 13 21 21 C 1.47431 * 108.70583 * 1.28516 * 12 11 10 22 22 N 1.31807 * 106.96444 * 0.26154 * 4 3 2 23 23 N 1.28469 * 110.07254 * 359.56125 * 22 4 3 24 24 C 1.46499 * 124.88673 * 180.16324 * 23 22 4 25 25 F 1.39894 * 109.47136 * 30.32968 * 24 23 22 26 26 F 1.39899 * 109.47128 * 150.33568 * 24 23 22 27 27 H 1.08999 * 109.47270 * 90.02593 * 1 2 3 28 28 H 1.09003 * 109.47814 * 210.02788 * 1 2 3 29 29 H 1.09001 * 109.47027 * 330.02710 * 1 2 3 30 30 H 1.08002 * 127.25147 * 359.97438 * 3 2 1 31 31 H 0.97002 * 120.00093 * 359.97438 * 7 5 4 32 32 H 1.09000 * 110.72463 * 88.05810 * 10 8 7 33 33 H 1.09001 * 110.87423 * 324.84752 * 10 8 7 34 34 H 1.09000 * 109.87870 * 262.77342 * 11 10 8 35 35 H 1.08994 * 110.00846 * 141.67886 * 11 10 8 36 36 H 0.97003 * 119.99939 * 354.92820 * 16 15 13 37 37 H 1.08998 * 110.35883 * 94.48293 * 21 12 11 38 38 H 1.09000 * 110.36735 * 216.80265 * 21 12 11 39 39 H 1.08996 * 109.46873 * 270.33062 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3100 1.0896 0.0000 4 6 3.6320 0.5852 0.0006 5 6 4.8765 1.3809 0.0003 6 8 4.8214 2.5955 -0.0001 7 7 6.0730 0.7607 0.0005 8 6 7.3073 1.5499 0.0007 9 1 7.1651 2.4938 -0.5256 10 6 8.4831 0.7436 -0.6113 11 6 9.7210 1.3716 0.0632 12 7 9.2636 2.0117 1.3052 13 6 10.0543 2.6996 2.1866 14 1 9.6027 3.2839 2.9746 15 6 11.4362 2.6460 2.0670 16 7 12.1869 3.5106 2.7159 17 14 12.2304 1.3467 0.9851 18 1 13.7068 1.4197 1.1265 19 1 11.7593 0.0011 1.4006 20 1 11.8564 1.5863 -0.4319 21 6 7.8139 1.7848 1.4480 22 7 3.5419 -0.7298 -0.0048 23 7 2.3080 -1.0872 0.0005 24 6 1.8375 -2.4746 0.0003 25 9 2.7690 -3.2830 0.6604 26 9 0.6055 -2.5493 0.6590 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3635 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5134 30 1 2.0058 2.1259 -0.0004 31 1 6.1170 -0.2083 0.0011 32 1 8.5224 0.8791 -1.6921 33 1 8.4016 -0.3138 -0.3593 34 1 10.1642 2.1174 -0.5968 35 1 10.4534 0.5978 0.2928 36 1 11.7740 4.2302 3.2185 37 1 7.6266 0.9062 2.0652 38 1 7.3333 2.6625 1.8801 39 1 1.7214 -2.8187 -1.0273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014575268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:25 Heat of formation + Delta-G solvation = -33.055200 kcal Electronic energy + Delta-G solvation = -25850.633432 eV Core-core repulsion = 21659.540598 eV Total energy + Delta-G solvation = -4191.092834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.51290 -48.62369 -43.85003 -40.89879 -39.16780 -35.83102 -34.45896 -33.90024 -33.70794 -31.26507 -29.79114 -28.38883 -27.50089 -25.90027 -24.36012 -22.73892 -22.46027 -21.87912 -21.23380 -19.67965 -19.39216 -19.05898 -18.45381 -18.11215 -17.64313 -17.09001 -16.83403 -16.16028 -15.83361 -15.55499 -15.50749 -15.44284 -15.11765 -15.08228 -14.61742 -14.41294 -14.28026 -14.14355 -13.91042 -13.78900 -13.44071 -13.23890 -13.07622 -12.80663 -12.55041 -12.34536 -12.05083 -11.80267 -11.44361 -11.40743 -11.07077 -10.73840 -10.66064 -10.22154 -10.10241 -9.13781 -8.69500 -5.52616 0.18701 0.66852 0.90035 1.41207 1.52243 1.73783 1.91142 2.18242 2.45619 2.56177 2.70365 3.10341 3.27167 3.41566 3.46250 3.48368 3.61547 3.80996 3.90855 4.04873 4.25636 4.34991 4.43937 4.45455 4.66847 4.72528 4.78492 4.84418 4.88757 4.93830 4.99586 5.08251 5.13137 5.34758 5.47816 5.51299 6.05563 6.26915 6.60214 6.78532 7.02474 7.37717 8.03404 8.83264 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.002794 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.927216 B =10019.284791 C =10556.617108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.045 3.955 3 C -0.193 4.193 4 C -0.011 4.011 5 C 0.602 3.398 6 O -0.565 6.565 7 N -0.690 5.690 8 C 0.144 3.856 9 H 0.091 0.909 10 C -0.116 4.116 11 C 0.098 3.902 12 N -0.632 5.632 13 C -0.317 4.317 14 H 0.038 0.962 15 C -0.080 4.080 16 N -0.963 5.963 17 Si 1.114 2.886 18 H -0.312 1.312 19 H -0.280 1.280 20 H -0.243 1.243 21 C 0.125 3.875 22 N -0.256 5.256 23 N -0.349 5.349 24 C 0.498 3.502 25 F -0.181 7.181 26 F -0.170 7.170 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.172 0.828 31 H 0.418 0.582 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.246 0.754 37 H 0.032 0.968 38 H 0.022 0.978 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.402 -17.508 -13.214 36.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.220 4.220 4 C -0.173 4.173 5 C 0.387 3.613 6 O -0.442 6.442 7 N -0.341 5.341 8 C 0.038 3.962 9 H 0.109 0.891 10 C -0.154 4.154 11 C -0.026 4.026 12 N -0.360 5.360 13 C -0.446 4.446 14 H 0.056 0.944 15 C -0.273 4.273 16 N -0.607 5.607 17 Si 0.940 3.060 18 H -0.241 1.241 19 H -0.207 1.207 20 H -0.167 1.167 21 C -0.001 4.001 22 N -0.090 5.090 23 N -0.147 5.147 24 C 0.368 3.632 25 F -0.162 7.162 26 F -0.151 7.151 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.190 0.810 31 H 0.256 0.744 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -27.392 -18.363 -13.608 35.675 hybrid contribution -1.484 1.651 1.765 2.836 sum -28.875 -16.712 -11.843 35.402 Atomic orbital electron populations 1.20904 0.82830 1.06321 1.05696 1.21975 0.97272 0.84672 1.03772 1.21844 0.89855 1.00948 1.09354 1.21867 0.95179 0.89972 1.10264 1.17168 0.82415 0.86155 0.75572 1.90809 1.87204 1.14495 1.51669 1.45608 1.04074 1.11047 1.73331 1.21988 0.83099 0.95706 0.95441 0.89091 1.22839 0.90735 1.00220 1.01570 1.22222 0.97458 0.95470 0.87441 1.44773 1.04542 1.63965 1.22719 1.20060 0.90178 1.24204 1.10146 0.94377 1.27368 0.93017 1.04054 1.02812 1.71003 1.37248 1.16252 1.36148 0.83376 0.72933 0.73205 0.76470 1.24132 1.20719 1.16727 1.22008 0.84119 0.97798 0.96220 1.73488 1.01683 1.14440 1.19406 1.47088 1.04104 1.08579 1.54954 1.22416 0.71668 0.72872 0.96264 1.93141 1.66851 1.71929 1.84323 1.93063 1.42613 1.94764 1.84661 0.87604 0.88551 0.88324 0.81027 0.74408 0.86892 0.88024 0.93860 0.94729 0.94533 0.94986 0.95948 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.00 71.23 0.71 0.14 16 2 C 0.05 0.65 6.81 41.40 0.28 0.94 16 3 C -0.19 -4.03 10.73 22.41 0.24 -3.79 16 4 C -0.01 -0.28 7.13 42.46 0.30 0.02 16 5 C 0.60 18.84 7.83 86.75 0.68 19.52 16 6 O -0.57 -21.91 16.57 -3.95 -0.07 -21.98 16 7 N -0.69 -19.56 5.19 -438.59 -2.28 -21.83 16 8 C 0.14 4.87 3.44 46.46 0.16 5.03 16 9 H 0.09 3.38 7.54 -2.39 -0.02 3.36 16 10 C -0.12 -3.37 6.59 31.79 0.21 -3.16 16 11 C 0.10 4.06 4.62 86.73 0.40 4.46 16 12 N -0.63 -32.29 3.32 -691.55 -2.30 -34.59 16 13 C -0.32 -19.57 10.56 84.03 0.89 -18.68 16 14 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 15 C -0.08 -4.98 5.50 84.86 0.47 -4.52 16 16 N -0.96 -64.33 13.70 21.65 0.30 -64.04 16 17 Si 1.11 54.20 24.53 68.60 1.68 55.89 16 18 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 19 H -0.28 -12.68 6.84 99.48 0.68 -12.00 16 20 H -0.24 -10.12 5.43 99.48 0.54 -9.58 16 21 C 0.13 5.47 6.93 86.93 0.60 6.07 16 22 N -0.26 -5.59 11.42 -48.17 -0.55 -6.14 16 23 N -0.35 -5.39 3.68 -351.22 -1.29 -6.68 16 24 C 0.50 3.79 6.49 127.77 0.83 4.62 16 25 F -0.18 -2.47 17.26 44.97 0.78 -1.70 16 26 F -0.17 -1.23 14.35 44.97 0.65 -0.59 16 27 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.10 0.44 5.49 -2.39 -0.01 0.42 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.42 9.71 8.30 -92.71 -0.77 8.94 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.10 2.43 8.01 -2.39 -0.02 2.41 16 34 H 0.04 1.85 6.78 -2.39 -0.02 1.83 16 35 H 0.04 1.46 3.81 -2.39 -0.01 1.45 16 36 H 0.25 16.60 8.73 -92.71 -0.81 15.80 16 37 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.22 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -85.31 329.64 2.80 -82.51 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.11 Total: 8.49 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.77 Total: 10.65 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.12 Total: -133.28 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 1.42 Total: -2.28 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 1.68 Total: 55.89 kcal Total: -85.31 2.80 -82.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014575268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.454 kcal (2) G-P(sol) polarization free energy of solvation -85.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds