Wall clock time and date at job start Tue Mar 31 2020 11:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28439 * 125.19341 * 2 1 4 4 C 1.30865 * 110.92701 * 180.28092 * 3 2 1 5 5 C 1.50704 * 126.06696 * 179.68185 * 4 3 2 6 6 F 1.39900 * 109.47445 * 30.03853 * 5 4 3 7 7 F 1.39900 * 109.46743 * 150.04297 * 5 4 3 8 8 C 1.39667 * 107.86099 * 359.71368 * 4 3 2 9 9 C 1.36597 * 125.18623 * 179.78828 * 2 1 3 10 10 C 1.47165 * 126.88658 * 0.02562 * 9 2 1 11 11 O 1.21622 * 120.00080 * 4.40815 * 10 9 2 12 12 N 1.34776 * 120.00019 * 184.41417 * 10 9 2 13 13 C 1.46500 * 119.99961 * 184.89676 * 12 10 9 14 14 H 1.08994 * 110.91450 * 328.90136 * 13 12 10 15 15 C 1.55155 * 111.00265 * 204.99927 * 13 12 10 16 16 C 1.54330 * 102.94256 * 206.42187 * 15 13 12 17 17 N 1.47026 * 107.26838 * 22.19369 * 16 15 13 18 18 C 1.36936 * 125.64903 * 181.02173 * 17 16 15 19 19 H 1.07993 * 120.00421 * 183.26174 * 18 17 16 20 20 C 1.38810 * 119.99720 * 3.26987 * 18 17 16 21 21 N 1.31623 * 119.99841 * 210.95975 * 20 18 17 22 22 Si 1.86804 * 120.00502 * 30.95684 * 20 18 17 23 23 H 1.48502 * 109.46847 * 275.78554 * 22 20 18 24 24 H 1.48509 * 109.46699 * 35.78152 * 22 20 18 25 25 H 1.48494 * 109.47137 * 155.78399 * 22 20 18 26 26 C 1.47429 * 108.70366 * 1.28614 * 17 16 15 27 27 H 1.09003 * 109.47380 * 270.20751 * 1 2 3 28 28 H 1.09008 * 109.46769 * 30.20155 * 1 2 3 29 29 H 1.08997 * 109.47481 * 150.20433 * 1 2 3 30 30 H 1.09004 * 109.46861 * 270.03918 * 5 4 3 31 31 H 1.08001 * 127.32048 * 179.97438 * 8 4 3 32 32 H 0.96999 * 120.00033 * 4.89194 * 12 10 9 33 33 H 1.08998 * 110.72497 * 88.05941 * 15 13 12 34 34 H 1.09004 * 110.72020 * 324.78459 * 15 13 12 35 35 H 1.08996 * 109.88158 * 262.77890 * 16 15 13 36 36 H 1.08998 * 110.01117 * 141.67921 * 16 15 13 37 37 H 0.96994 * 119.99716 * 5.08267 * 21 20 18 38 38 H 1.08995 * 110.36479 * 94.47981 * 26 17 16 39 39 H 1.09001 * 110.36308 * 216.80733 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7271 -0.0060 5 6 4.6336 1.6891 -0.0147 6 9 4.2673 2.8674 0.6445 7 9 5.7255 1.1087 0.6396 8 6 3.5611 -0.6668 -0.0036 9 6 2.2521 -1.1164 0.0041 10 6 1.7991 -2.5166 0.0088 11 8 0.6128 -2.7722 -0.0717 12 7 2.6989 -3.5156 0.1024 13 6 2.2594 -4.9093 -0.0008 14 1 1.2477 -5.0280 0.3871 15 6 3.2483 -5.8595 0.7248 16 6 3.0560 -7.1955 -0.0234 17 7 2.4960 -6.8786 -1.3455 18 6 2.1603 -7.7913 -2.3096 19 1 1.8037 -7.4541 -3.2715 20 6 2.2782 -9.1498 -2.0503 21 7 2.5603 -9.9844 -3.0282 22 14 2.0366 -9.7938 -0.3135 23 1 3.3084 -9.6671 0.4427 24 1 0.9770 -9.0042 0.3642 25 1 1.6324 -11.2217 -0.3667 26 6 2.3619 -5.4152 -1.4637 27 1 -0.3634 0.0037 1.0277 28 1 -0.3633 0.8883 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 4.9072 1.9189 -1.0445 31 1 4.4594 -1.2664 -0.0075 32 1 3.6375 -3.3119 0.2380 33 1 2.9811 -5.9645 1.7763 34 1 4.2730 -5.5028 0.6200 35 1 2.3656 -7.8333 0.5284 36 1 4.0153 -7.7000 -0.1385 37 1 2.7583 -9.6437 -3.9145 38 1 3.2391 -4.9922 -1.9532 39 1 1.4579 -5.1607 -2.0169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015261315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:29 Heat of formation + Delta-G solvation = -46.007825 kcal Electronic energy + Delta-G solvation = -25846.848729 eV Core-core repulsion = 21655.194227 eV Total energy + Delta-G solvation = -4191.654502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94186 -47.98099 -43.83796 -40.90786 -39.12353 -35.96728 -34.84859 -34.21346 -32.42920 -31.04846 -29.78742 -29.40767 -26.35173 -26.04906 -24.44391 -22.73023 -22.54158 -21.66342 -21.13069 -19.72614 -19.15905 -18.54504 -18.18240 -17.71394 -17.36118 -17.18015 -17.14920 -16.82634 -15.89828 -15.63419 -15.49569 -15.26372 -14.98857 -14.77944 -14.57443 -14.32776 -14.12411 -14.09919 -13.90197 -13.70830 -13.47362 -13.06192 -13.03131 -12.64286 -12.52075 -12.37176 -12.07721 -11.85589 -11.58946 -11.38114 -11.13043 -10.59619 -10.59055 -10.30341 -10.20901 -9.16288 -8.70702 -5.39891 -0.00071 1.03835 1.10224 1.41724 1.54251 1.73057 1.89754 1.96793 2.54943 2.65158 2.96972 3.13080 3.22011 3.38638 3.47387 3.69349 3.82576 3.94254 4.02725 4.03959 4.07024 4.22086 4.33290 4.34094 4.44586 4.50803 4.60779 4.74928 4.84657 4.89654 4.95950 5.07921 5.16052 5.35391 5.40727 5.56668 6.08356 6.28245 6.67806 6.80211 6.95165 7.45426 8.09508 8.80220 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024699 B = 0.002832 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.382222 B = 9886.265581 C =10384.155090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.252 5.252 3 N -0.255 5.255 4 C -0.070 4.070 5 C 0.366 3.634 6 F -0.207 7.207 7 F -0.195 7.195 8 C -0.142 4.142 9 C -0.046 4.046 10 C 0.594 3.406 11 O -0.567 6.567 12 N -0.682 5.682 13 C 0.144 3.856 14 H 0.090 0.910 15 C -0.115 4.115 16 C 0.103 3.897 17 N -0.629 5.629 18 C -0.331 4.331 19 H 0.044 0.956 20 C -0.068 4.068 21 N -0.945 5.945 22 Si 1.097 2.903 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.308 1.308 26 C 0.127 3.873 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.200 0.800 32 H 0.422 0.578 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.039 0.961 37 H 0.251 0.749 38 H 0.040 0.960 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 25.098 10.552 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.041 5.041 3 N -0.091 5.091 4 C -0.226 4.226 5 C 0.311 3.689 6 F -0.188 7.188 7 F -0.176 7.176 8 C -0.170 4.170 9 C -0.173 4.173 10 C 0.379 3.621 11 O -0.447 6.447 12 N -0.334 5.334 13 C 0.038 3.962 14 H 0.108 0.892 15 C -0.153 4.153 16 C -0.021 4.021 17 N -0.357 5.357 18 C -0.459 4.459 19 H 0.062 0.938 20 C -0.263 4.263 21 N -0.587 5.587 22 Si 0.924 3.076 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.236 1.236 26 C 0.000 4.000 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.188 0.812 31 H 0.217 0.783 32 H 0.260 0.740 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.768 24.411 11.342 27.059 hybrid contribution 0.455 0.485 -1.535 1.673 sum 3.222 24.896 9.807 26.951 Atomic orbital electron populations 1.22655 0.70616 1.06910 1.06083 1.45964 1.08999 1.01304 1.47820 1.73092 1.03552 1.13950 1.18457 1.22799 0.92912 0.95294 1.11598 1.19778 0.78576 0.75676 0.94879 1.93000 1.92128 1.49315 1.84341 1.93020 1.55101 1.84968 1.84530 1.22354 0.96522 0.93644 1.04528 1.21388 0.91771 0.89344 1.14837 1.16995 0.85509 0.83479 0.76073 1.90802 1.17454 1.84764 1.51629 1.45345 1.11600 1.04349 1.72079 1.22040 0.99663 0.79298 0.95244 0.89214 1.22834 1.00512 0.91968 1.00012 1.21875 0.96832 0.97746 0.85660 1.44788 1.74634 1.01719 1.14545 1.19868 1.44286 0.88732 0.93018 0.93806 1.26948 0.98683 0.92279 1.08410 1.71000 1.46770 1.37570 1.03324 0.83446 0.78138 0.73686 0.72300 1.18536 1.20563 1.23647 1.22040 0.98232 0.83801 0.95929 0.88243 0.86525 0.87669 0.81157 0.78299 0.73974 0.87360 0.87354 0.95619 0.94311 0.94021 0.94208 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.87 127.77 1.39 2.63 16 2 N -0.25 -5.32 3.75 -356.01 -1.33 -6.65 16 3 N -0.25 -5.43 11.84 -47.49 -0.56 -5.99 16 4 C -0.07 -1.24 6.84 43.05 0.29 -0.95 16 5 C 0.37 4.76 5.84 71.24 0.42 5.18 16 6 F -0.21 -3.72 17.28 44.97 0.78 -2.95 16 7 F -0.19 -2.82 17.06 44.97 0.77 -2.05 16 8 C -0.14 -2.31 10.13 22.66 0.23 -2.08 16 9 C -0.05 -0.96 6.96 40.79 0.28 -0.68 16 10 C 0.59 14.65 7.79 86.59 0.67 15.32 16 11 O -0.57 -17.86 14.28 -4.10 -0.06 -17.92 16 12 N -0.68 -14.51 5.17 -439.12 -2.27 -16.78 16 13 C 0.14 4.13 3.48 46.46 0.16 4.29 16 14 H 0.09 2.94 7.48 -2.39 -0.02 2.92 16 15 C -0.12 -2.92 6.59 31.78 0.21 -2.71 16 16 C 0.10 4.02 4.89 86.73 0.42 4.44 16 17 N -0.63 -29.97 3.34 -691.54 -2.31 -32.28 16 18 C -0.33 -19.31 10.41 84.03 0.87 -18.43 16 19 H 0.04 2.79 8.06 -2.91 -0.02 2.76 16 20 C -0.07 -4.04 5.42 84.86 0.46 -3.58 16 21 N -0.94 -60.30 13.70 21.65 0.30 -60.01 16 22 Si 1.10 52.57 24.66 68.60 1.69 54.26 16 23 H -0.26 -10.99 6.56 99.48 0.65 -10.34 16 24 H -0.28 -12.56 6.73 99.48 0.67 -11.89 16 25 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 26 C 0.13 4.88 6.93 86.93 0.60 5.49 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.10 2.03 6.22 -2.39 -0.01 2.02 16 30 H 0.17 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.20 1.85 7.61 -2.91 -0.02 1.83 16 32 H 0.42 5.83 7.64 -92.71 -0.71 5.13 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.07 8.00 -2.38 -0.02 2.05 16 35 H 0.03 1.06 3.99 -2.39 -0.01 1.05 16 36 H 0.04 1.57 7.53 -2.39 -0.02 1.55 16 37 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.71 331.76 3.29 -75.42 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.27 Total: 6.01 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.02 Total: 8.93 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.18 Total: -121.72 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.06 Total: -17.92 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 1.54 Total: -5.00 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 1.69 Total: 54.26 kcal Total: -78.71 3.29 -75.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015261315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.415 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds