Wall clock time and date at job start Tue Mar 31 2020 11:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28435 * 125.19304 * 2 1 4 4 C 1.30869 * 110.92979 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.07006 * 179.73081 * 4 3 2 6 6 F 1.39900 * 109.47017 * 30.03014 * 5 4 3 7 7 F 1.39903 * 109.47157 * 150.02469 * 5 4 3 8 8 C 1.39674 * 107.86002 * 359.97438 * 4 3 2 9 9 C 1.36607 * 125.18569 * 179.97438 * 2 1 3 10 10 C 1.47160 * 126.88589 * 0.04111 * 9 2 1 11 11 O 1.21633 * 120.00026 * 5.62943 * 10 9 2 12 12 N 1.34782 * 119.99978 * 185.62895 * 10 9 2 13 13 C 1.46497 * 120.00035 * 185.18016 * 12 10 9 14 14 H 1.09009 * 110.88185 * 31.12565 * 13 12 10 15 15 C 1.55156 * 111.00224 * 154.99913 * 13 12 10 16 16 C 1.54328 * 102.93951 * 153.57643 * 15 13 12 17 17 N 1.47015 * 107.27083 * 337.81168 * 16 15 13 18 18 C 1.36939 * 125.64923 * 178.91754 * 17 16 15 19 19 H 1.08004 * 120.00303 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99762 * 0.02562 * 18 17 16 21 21 N 1.31618 * 119.99980 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99826 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47068 * 90.00167 * 22 20 18 24 24 H 1.48498 * 109.47033 * 210.00014 * 22 20 18 25 25 H 1.48499 * 109.47332 * 329.99777 * 22 20 18 26 26 C 1.47423 * 108.70504 * 358.93789 * 17 16 15 27 27 H 1.08993 * 109.47172 * 86.06317 * 1 2 3 28 28 H 1.09000 * 109.47087 * 206.06524 * 1 2 3 29 29 H 1.08996 * 109.46585 * 326.06258 * 1 2 3 30 30 H 1.09002 * 109.47607 * 270.02637 * 5 4 3 31 31 H 1.08002 * 127.31932 * 179.97438 * 8 4 3 32 32 H 0.96996 * 119.99298 * 5.18417 * 12 10 9 33 33 H 1.08999 * 110.72626 * 271.94358 * 15 13 12 34 34 H 1.09007 * 110.71794 * 35.04366 * 15 13 12 35 35 H 1.09002 * 109.87925 * 97.22611 * 16 15 13 36 36 H 1.09001 * 109.88191 * 218.39010 * 16 15 13 37 37 H 0.96999 * 120.00123 * 179.97438 * 21 20 18 38 38 H 1.08997 * 110.36515 * 265.28812 * 26 17 16 39 39 H 1.09009 * 110.36572 * 142.96974 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7272 0.0005 5 6 4.6336 1.6891 -0.0050 6 9 4.2641 2.8689 0.6497 7 9 5.7224 1.1104 0.6559 8 6 3.5612 -0.6668 0.0015 9 6 2.2522 -1.1165 0.0005 10 6 1.7992 -2.5166 0.0003 11 8 0.6147 -2.7726 -0.1037 12 7 2.6969 -3.5154 0.1153 13 6 2.2605 -4.9092 0.0014 14 1 1.4088 -4.9958 -0.6733 15 6 3.4284 -5.8218 -0.4575 16 6 3.0385 -7.1988 0.1201 17 7 2.1121 -6.9576 1.2358 18 6 1.5165 -7.9240 2.0018 19 1 0.8478 -7.6429 2.8020 20 6 1.7723 -9.2649 1.7498 21 7 2.5869 -9.6075 0.7744 22 14 0.9593 -10.5831 2.7941 23 1 -0.3362 -10.9713 2.1810 24 1 1.8467 -11.7714 2.8703 25 1 0.7214 -10.0547 4.1614 26 6 1.9301 -5.5032 1.3933 27 1 -0.3633 0.0706 -1.0252 28 1 -0.3633 -0.9231 0.4516 29 1 -0.3632 0.8526 0.5737 30 1 4.9122 1.9165 -1.0340 31 1 4.4595 -1.2664 0.0018 32 1 3.6318 -3.3112 0.2736 33 1 3.4827 -5.8612 -1.5454 34 1 4.3740 -5.4783 -0.0378 35 1 2.5469 -7.7968 -0.6473 36 1 3.9281 -7.7145 0.4816 37 1 2.7660 -10.5444 0.5985 38 1 2.6171 -5.1140 2.1447 39 1 0.8994 -5.2773 1.6672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015261318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:33 Heat of formation + Delta-G solvation = -25.691021 kcal Electronic energy + Delta-G solvation = -25741.178145 eV Core-core repulsion = 21550.404646 eV Total energy + Delta-G solvation = -4190.773499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25303 -47.28037 -42.97528 -39.59978 -37.31899 -34.56703 -33.81394 -32.23681 -31.09722 -29.21343 -29.03453 -27.23474 -25.55743 -24.72552 -23.37876 -21.64274 -20.55942 -20.22305 -19.94402 -18.36376 -17.88114 -17.43057 -16.90205 -16.53981 -16.52372 -16.33960 -15.51788 -14.72645 -14.66599 -14.51703 -14.16911 -14.02060 -13.89981 -13.61873 -13.36627 -13.06071 -12.98134 -12.71084 -12.50144 -12.32741 -11.87609 -11.79998 -11.26262 -11.12768 -10.96463 -10.81484 -10.49123 -10.15526 -10.03527 -9.99110 -9.75292 -9.64450 -9.46935 -8.93124 -8.63998 -6.89125 -5.75483 -3.09322 0.94688 1.84807 1.94610 2.98876 3.03191 3.38774 3.39783 3.44422 3.46072 3.78020 4.00982 4.39486 4.49693 4.58617 4.65848 4.86516 4.91085 5.06211 5.16206 5.23656 5.34500 5.38441 5.54049 5.63817 5.70436 5.84935 6.05472 6.21352 6.24190 6.33633 6.44709 6.59987 6.82622 7.36795 7.49539 7.51977 7.55766 7.76839 8.04377 8.20742 9.17554 9.77276 10.41406 11.36427 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.002658 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.562004 B =10532.440554 C =11089.639493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.245 5.245 3 N -0.240 5.240 4 C -0.062 4.062 5 C 0.366 3.634 6 F -0.193 7.193 7 F -0.191 7.191 8 C -0.158 4.158 9 C -0.024 4.024 10 C 0.588 3.412 11 O -0.535 6.535 12 N -0.696 5.696 13 C 0.128 3.872 14 H 0.100 0.900 15 C -0.149 4.149 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.129 3.871 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.170 0.830 32 H 0.402 0.598 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 21.667 -5.159 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.033 5.033 3 N -0.076 5.076 4 C -0.218 4.218 5 C 0.311 3.689 6 F -0.174 7.174 7 F -0.172 7.172 8 C -0.187 4.187 9 C -0.152 4.152 10 C 0.372 3.628 11 O -0.412 6.412 12 N -0.346 5.346 13 C 0.024 3.976 14 H 0.118 0.882 15 C -0.188 4.188 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.002 3.998 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.188 0.812 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.814 22.122 -5.202 22.798 hybrid contribution 0.601 -1.240 0.707 1.549 sum 2.415 20.883 -4.495 21.497 Atomic orbital electron populations 1.22524 0.71476 1.06665 1.05182 1.45721 1.08281 1.01453 1.47889 1.73084 1.02709 1.13698 1.18095 1.22335 0.92748 0.94493 1.12245 1.19335 0.79596 0.76739 0.93222 1.93027 1.91911 1.48444 1.84032 1.93033 1.55307 1.84986 1.83910 1.21973 0.96417 0.93543 1.06742 1.21597 0.90809 0.90252 1.12582 1.16813 0.86020 0.82659 0.77298 1.90812 1.15912 1.84146 1.50365 1.45739 1.11022 1.06193 1.71628 1.22444 0.98529 0.77040 0.99633 0.88221 1.23212 0.96586 0.98463 1.00564 1.21162 0.94020 0.89390 0.90046 1.44384 1.52791 0.99098 1.36773 1.19069 1.21246 0.85435 1.09896 0.90353 1.24807 0.99783 0.97001 0.98793 1.69936 1.39164 1.16015 1.31949 0.86090 0.78536 0.81387 0.79586 1.21543 1.21638 1.20667 1.21818 0.98710 0.86143 0.93144 0.89174 0.86352 0.88612 0.85276 0.81213 0.76318 0.91408 0.91812 0.93124 0.93425 0.93678 0.96129 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.88 59.85 0.65 1.38 16 2 N -0.25 -2.88 3.75 -63.88 -0.24 -3.12 16 3 N -0.24 -2.88 11.84 33.64 0.40 -2.48 16 4 C -0.06 -0.65 6.84 -82.47 -0.56 -1.22 16 5 C 0.37 3.04 5.84 36.00 0.21 3.25 16 6 F -0.19 -2.01 17.28 2.25 0.04 -1.97 16 7 F -0.19 -1.76 17.07 2.25 0.04 -1.72 16 8 C -0.16 -1.61 10.13 -38.98 -0.39 -2.01 16 9 C -0.02 -0.29 6.96 -82.06 -0.57 -0.86 16 10 C 0.59 8.21 7.78 -12.64 -0.10 8.11 16 11 O -0.53 -8.94 14.37 5.25 0.08 -8.86 16 12 N -0.70 -9.19 5.18 -52.89 -0.27 -9.46 16 13 C 0.13 2.16 3.38 -65.79 -0.22 1.93 16 14 H 0.10 1.84 7.62 -51.92 -0.40 1.44 16 15 C -0.15 -2.50 6.60 -24.89 -0.16 -2.66 16 16 C 0.18 4.13 5.37 -3.07 -0.02 4.11 16 17 N -0.60 -15.15 3.39 -170.07 -0.58 -15.73 16 18 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.13 2.66 6.93 -2.54 -0.02 2.65 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.20 6.22 -51.93 -0.32 0.88 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.17 1.26 7.63 -52.49 -0.40 0.86 16 32 H 0.40 4.16 7.65 -40.82 -0.31 3.85 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 35 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 36 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -33.25 337.52 -6.04 -39.30 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.70 Total: 0.18 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.44 Total: 7.88 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.12 Total: -56.83 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.25 -6.04 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015261318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.607 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds