Wall clock time and date at job start Tue Mar 31 2020 11:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47035 * 264.99087 * 3 2 1 5 5 H 1.48501 * 109.47201 * 24.99123 * 3 2 1 6 6 H 1.48504 * 109.46702 * 144.99074 * 3 2 1 7 7 C 1.38806 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00668 * 187.32082 * 7 2 1 9 9 N 1.36942 * 119.99977 * 7.32181 * 7 2 1 10 10 C 1.47427 * 125.64885 * 185.51062 * 9 7 2 11 11 C 1.55129 * 104.71812 * 155.81713 * 10 9 7 12 12 C 1.55159 * 101.49043 * 37.29735 * 11 10 9 13 13 H 1.09000 * 110.72042 * 205.96879 * 12 11 10 14 14 N 1.46494 * 110.87425 * 82.76220 * 12 11 10 15 15 C 1.34778 * 119.99960 * 159.93444 * 14 12 11 16 16 O 1.21283 * 119.99832 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99863 * 180.02562 * 15 14 12 18 18 C 1.50703 * 109.46839 * 180.02562 * 17 15 14 19 19 C 1.34004 * 126.90369 * 265.02283 * 18 17 15 20 20 O 1.34454 * 110.14990 * 179.97438 * 19 18 17 21 21 C 1.34807 * 110.88969 * 0.02562 * 20 19 18 22 22 C 1.38941 * 133.48686 * 180.02562 * 21 20 19 23 23 C 1.37853 * 119.81439 * 179.97438 * 22 21 20 24 24 C 1.38741 * 120.68346 * 0.02562 * 23 22 21 25 25 C 1.36742 * 120.42224 * 0.02562 * 24 23 22 26 26 C 1.39409 * 119.71186 * 359.67455 * 25 24 23 27 27 C 1.47024 * 125.64744 * 5.81515 * 9 7 2 28 28 H 0.97000 * 119.99633 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36369 * 274.74211 * 10 9 7 30 30 H 1.08994 * 110.36800 * 37.06894 * 10 9 7 31 31 H 1.08998 * 111.19642 * 279.18646 * 11 10 9 32 32 H 1.09007 * 110.90174 * 155.27376 * 11 10 9 33 33 H 0.97002 * 120.00195 * 339.94166 * 14 12 11 34 34 H 1.09002 * 109.47411 * 300.00223 * 17 15 14 35 35 H 1.09000 * 109.47361 * 60.00783 * 17 15 14 36 36 H 1.08000 * 124.92438 * 359.95922 * 19 18 17 37 37 H 1.08000 * 120.09897 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.66005 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.79144 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.14541 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.88611 * 300.44446 * 27 9 7 42 42 H 1.09003 * 109.88062 * 61.60582 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3946 5 1 1.3987 2.6810 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1197 9 7 1.3340 -2.3833 -0.1501 10 6 1.9255 -3.7303 -0.0542 11 6 0.7396 -4.6554 0.3254 12 6 -0.4174 -4.0275 -0.4959 13 1 -1.3798 -4.2371 -0.0290 14 7 -0.3981 -4.5106 -1.8787 15 6 -1.5083 -4.4248 -2.6381 16 8 -2.5231 -3.9471 -2.1768 17 6 -1.4885 -4.9223 -4.0604 18 6 -2.8439 -4.7123 -4.6849 19 6 -3.8406 -5.6045 -4.7636 20 8 -4.8999 -5.0615 -5.3888 21 6 -4.6447 -3.7878 -5.7488 22 6 -5.3868 -2.8120 -6.4027 23 6 -4.8351 -1.5695 -6.6311 24 6 -3.5433 -1.2811 -6.2150 25 6 -2.7958 -2.2277 -5.5708 26 6 -3.3392 -3.4879 -5.3253 27 6 -0.1009 -2.5181 -0.4404 28 1 -0.4849 0.8401 0.0004 29 1 2.3496 -4.0275 -1.0134 30 1 2.6892 -3.7548 0.7231 31 1 0.5301 -4.6092 1.3940 32 1 0.9303 -5.6814 0.0103 33 1 0.4136 -4.8924 -2.2478 34 1 -0.7382 -4.3716 -4.6277 35 1 -1.2443 -5.9846 -4.0705 36 1 -3.7989 -6.6135 -4.3807 37 1 -6.3932 -3.0261 -6.7311 38 1 -5.4143 -0.8127 -7.1392 39 1 -3.1251 -0.3031 -6.4019 40 1 -1.7909 -1.9983 -5.2485 41 1 -0.6850 -2.0456 0.3494 42 1 -0.3299 -2.0558 -1.4006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015901841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:01 Heat of formation + Delta-G solvation = 22.044880 kcal Electronic energy + Delta-G solvation = -25665.771921 eV Core-core repulsion = 21999.005185 eV Total energy + Delta-G solvation = -3666.766736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43039 -39.42829 -37.81382 -37.20710 -33.87114 -33.65755 -31.92654 -30.57588 -29.93457 -29.00131 -27.96954 -26.96989 -24.42362 -23.30192 -22.28270 -21.38812 -20.25066 -19.80032 -19.66144 -17.36057 -17.08562 -16.97642 -16.64208 -15.91571 -15.80377 -15.60113 -14.97415 -14.46175 -14.12848 -13.90565 -13.82998 -13.71756 -13.26279 -13.00020 -12.69589 -12.43107 -12.24653 -12.10212 -11.89909 -11.57620 -11.54072 -11.06720 -10.86148 -10.80730 -10.50279 -10.47468 -10.32362 -10.04970 -9.99905 -9.71202 -9.38749 -8.62979 -8.59631 -8.46880 -8.12397 -6.81873 -5.66884 -3.05003 0.94762 1.40358 2.29773 2.80620 3.02933 3.40718 3.45242 3.47952 3.61660 3.81962 4.44922 4.51154 4.54871 4.84104 4.97474 5.01927 5.15988 5.29583 5.35488 5.39903 5.45819 5.46665 5.48784 5.49268 5.61167 5.75850 5.82962 5.93075 6.11872 6.23423 6.28063 6.37555 6.43889 6.49374 6.50723 6.59209 6.65315 6.66803 6.94273 7.17663 7.55361 7.66169 7.81499 7.97255 8.28334 8.66523 9.22112 9.83704 10.48993 11.41561 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.003785 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.322633 B = 7395.952440 C = 8992.472926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.132 3.868 11 C -0.139 4.139 12 C 0.115 3.885 13 H 0.086 0.914 14 N -0.714 5.714 15 C 0.510 3.490 16 O -0.529 6.529 17 C -0.070 4.070 18 C -0.150 4.150 19 C 0.012 3.988 20 O -0.194 6.194 21 C 0.049 3.951 22 C -0.111 4.111 23 C -0.096 4.096 24 C -0.136 4.136 25 C -0.062 4.062 26 C -0.111 4.111 27 C 0.169 3.831 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.205 0.795 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -12.302 -12.447 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.006 3.994 11 C -0.178 4.178 12 C 0.011 3.989 13 H 0.104 0.896 14 N -0.365 5.365 15 C 0.295 3.705 16 O -0.405 6.405 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.053 4.053 20 O -0.096 6.096 21 C 0.002 3.998 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.154 4.154 25 C -0.080 4.080 26 C -0.112 4.112 27 C 0.043 3.957 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.222 0.778 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.812 -11.836 -12.120 18.259 hybrid contribution 1.063 0.794 -0.039 1.328 sum -5.749 -11.042 -12.160 17.402 Atomic orbital electron populations 1.69952 1.04886 1.25150 1.56280 1.24825 0.95611 0.97718 1.02156 0.86172 0.78580 0.83580 0.77624 1.21619 1.21684 1.20714 1.19012 0.90834 0.82666 1.43646 0.90514 1.44506 1.05018 0.99936 1.83677 1.21617 0.94156 0.86412 0.97251 1.23074 0.96511 0.97975 1.00225 1.22383 0.98761 0.97517 0.80266 0.89612 1.45995 1.13234 1.63369 1.13922 1.20379 0.83632 0.79238 0.87284 1.90737 1.32197 1.44023 1.73560 1.19998 0.94377 1.03232 0.93448 1.20429 0.97113 0.92990 1.04677 1.23613 0.84321 0.99261 0.98085 1.83974 1.38759 1.23919 1.62927 1.19586 0.94973 0.84240 1.00984 1.19875 0.99869 0.91216 1.02018 1.20900 0.95532 0.95320 0.99654 1.20787 0.94709 0.99645 1.00289 1.20359 1.00289 0.90955 0.96421 1.19719 0.94465 0.95172 1.01861 1.21599 0.85382 0.87986 1.00690 0.93651 0.96672 0.94103 0.90226 0.91703 0.77226 0.87916 0.88028 0.77815 0.85307 0.84971 0.85357 0.85551 0.91326 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.67 10.46 55.49 0.58 -27.09 16 2 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 3 Si 0.91 22.32 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.52 10.26 -15.06 -0.15 -6.67 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.60 -15.30 3.39 -169.93 -0.58 -15.88 16 10 C 0.13 2.58 7.22 -2.41 -0.02 2.56 16 11 C -0.14 -2.27 6.66 -24.46 -0.16 -2.43 16 12 C 0.12 2.18 3.24 -66.10 -0.21 1.97 16 13 H 0.09 1.69 7.69 -51.93 -0.40 1.29 16 14 N -0.71 -11.27 5.12 -52.03 -0.27 -11.54 16 15 C 0.51 8.42 7.82 -10.99 -0.09 8.33 16 16 O -0.53 -11.31 15.76 5.55 0.09 -11.22 16 17 C -0.07 -0.84 6.25 -29.04 -0.18 -1.02 16 18 C -0.15 -2.07 4.85 -102.66 -0.50 -2.57 16 19 C 0.01 0.15 11.89 29.24 0.35 0.49 16 20 O -0.19 -2.70 10.58 3.90 0.04 -2.66 16 21 C 0.05 0.72 7.42 -38.47 -0.29 0.43 16 22 C -0.11 -1.36 10.07 -39.46 -0.40 -1.76 16 23 C -0.10 -1.08 10.01 -39.54 -0.40 -1.48 16 24 C -0.14 -1.72 9.98 -39.94 -0.40 -2.12 16 25 C -0.06 -0.92 10.05 -39.69 -0.40 -1.31 16 26 C -0.11 -1.71 6.38 -105.16 -0.67 -2.38 16 27 C 0.17 4.20 5.18 -3.06 -0.02 4.19 16 28 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.39 5.04 8.63 -40.82 -0.35 4.69 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.21 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.07 1.96 6.88 -51.93 -0.36 1.60 16 42 H 0.03 0.95 7.88 -51.93 -0.41 0.54 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -35.89 355.30 -9.14 -45.03 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.72 Total: 4.74 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.62 Total: -4.05 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.26 Total: -54.50 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.13 Total: -13.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.89 -9.14 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015901841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.079 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds