Wall clock time and date at job start Tue Mar 31 2020 11:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47035 * 264.99087 * 3 2 1 5 5 H 1.48501 * 109.47201 * 24.99123 * 3 2 1 6 6 H 1.48504 * 109.46702 * 144.99074 * 3 2 1 7 7 C 1.38806 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00668 * 187.32082 * 7 2 1 9 9 N 1.36942 * 119.99977 * 7.32181 * 7 2 1 10 10 C 1.47427 * 125.64885 * 185.51062 * 9 7 2 11 11 C 1.55129 * 104.71812 * 155.81713 * 10 9 7 12 12 C 1.55159 * 101.49043 * 37.29735 * 11 10 9 13 13 H 1.09000 * 110.72042 * 205.96879 * 12 11 10 14 14 N 1.46494 * 110.87425 * 82.76220 * 12 11 10 15 15 C 1.34778 * 119.99960 * 159.93444 * 14 12 11 16 16 O 1.21283 * 119.99832 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99863 * 180.02562 * 15 14 12 18 18 C 1.50703 * 109.46839 * 180.02562 * 17 15 14 19 19 C 1.34004 * 126.90369 * 265.02283 * 18 17 15 20 20 O 1.34454 * 110.14990 * 179.97438 * 19 18 17 21 21 C 1.34807 * 110.88969 * 0.02562 * 20 19 18 22 22 C 1.38941 * 133.48686 * 180.02562 * 21 20 19 23 23 C 1.37853 * 119.81439 * 179.97438 * 22 21 20 24 24 C 1.38741 * 120.68346 * 0.02562 * 23 22 21 25 25 C 1.36742 * 120.42224 * 0.02562 * 24 23 22 26 26 C 1.39409 * 119.71186 * 359.67455 * 25 24 23 27 27 C 1.47024 * 125.64744 * 5.81515 * 9 7 2 28 28 H 0.97000 * 119.99633 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36369 * 274.74211 * 10 9 7 30 30 H 1.08994 * 110.36800 * 37.06894 * 10 9 7 31 31 H 1.08998 * 111.19642 * 279.18646 * 11 10 9 32 32 H 1.09007 * 110.90174 * 155.27376 * 11 10 9 33 33 H 0.97002 * 120.00195 * 339.94166 * 14 12 11 34 34 H 1.09002 * 109.47411 * 300.00223 * 17 15 14 35 35 H 1.09000 * 109.47361 * 60.00783 * 17 15 14 36 36 H 1.08000 * 124.92438 * 359.95922 * 19 18 17 37 37 H 1.08000 * 120.09897 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.66005 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.79144 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.14541 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.88611 * 300.44446 * 27 9 7 42 42 H 1.09003 * 109.88062 * 61.60582 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3946 5 1 1.3987 2.6810 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1197 9 7 1.3340 -2.3833 -0.1501 10 6 1.9255 -3.7303 -0.0542 11 6 0.7396 -4.6554 0.3254 12 6 -0.4174 -4.0275 -0.4959 13 1 -1.3798 -4.2371 -0.0290 14 7 -0.3981 -4.5106 -1.8787 15 6 -1.5083 -4.4248 -2.6381 16 8 -2.5231 -3.9471 -2.1768 17 6 -1.4885 -4.9223 -4.0604 18 6 -2.8439 -4.7123 -4.6849 19 6 -3.8406 -5.6045 -4.7636 20 8 -4.8999 -5.0615 -5.3888 21 6 -4.6447 -3.7878 -5.7488 22 6 -5.3868 -2.8120 -6.4027 23 6 -4.8351 -1.5695 -6.6311 24 6 -3.5433 -1.2811 -6.2150 25 6 -2.7958 -2.2277 -5.5708 26 6 -3.3392 -3.4879 -5.3253 27 6 -0.1009 -2.5181 -0.4404 28 1 -0.4849 0.8401 0.0004 29 1 2.3496 -4.0275 -1.0134 30 1 2.6892 -3.7548 0.7231 31 1 0.5301 -4.6092 1.3940 32 1 0.9303 -5.6814 0.0103 33 1 0.4136 -4.8924 -2.2478 34 1 -0.7382 -4.3716 -4.6277 35 1 -1.2443 -5.9846 -4.0705 36 1 -3.7989 -6.6135 -4.3807 37 1 -6.3932 -3.0261 -6.7311 38 1 -5.4143 -0.8127 -7.1392 39 1 -3.1251 -0.3031 -6.4019 40 1 -1.7909 -1.9983 -5.2485 41 1 -0.6850 -2.0456 0.3494 42 1 -0.3299 -2.0558 -1.4006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015901841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:01 Heat of formation + Delta-G solvation = -2.222190 kcal Electronic energy + Delta-G solvation = -25666.824220 eV Core-core repulsion = 21999.005185 eV Total energy + Delta-G solvation = -3667.819035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.41088 -40.84958 -38.85406 -38.77886 -35.41008 -34.88102 -33.74212 -31.61379 -31.09948 -30.55648 -29.39001 -28.41138 -26.37955 -24.28856 -23.25821 -22.72838 -22.00229 -21.34310 -20.80042 -18.89505 -18.31274 -18.13313 -18.00497 -17.21927 -16.98428 -16.66785 -16.60655 -16.03034 -15.69462 -15.33824 -15.07914 -14.73405 -14.62506 -14.36291 -14.05541 -13.84602 -13.54109 -13.32278 -13.24407 -13.04333 -12.98218 -12.72012 -12.53598 -12.21599 -12.13863 -11.91997 -11.89610 -11.83165 -11.71977 -11.16388 -10.79221 -10.66961 -9.97766 -9.61130 -9.10173 -8.90597 -7.83356 -5.23715 -0.02457 0.38177 1.30405 1.42704 1.45454 1.53825 1.73964 1.87960 2.39298 2.48913 2.76979 3.32418 3.50877 3.60100 3.64766 3.84704 3.90115 4.00794 4.10308 4.12686 4.21400 4.32435 4.41252 4.45144 4.56875 4.61230 4.66919 4.68397 4.78772 4.98581 5.01137 5.07656 5.17205 5.25164 5.33941 5.39960 5.46650 5.49418 5.51443 5.69011 5.69576 5.77730 6.18481 6.18941 6.68995 7.06406 7.40488 7.77333 8.40989 9.23408 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.003785 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.322633 B = 7395.952440 C = 8992.472926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.626 5.626 10 C 0.124 3.876 11 C -0.117 4.117 12 C 0.129 3.871 13 H 0.076 0.924 14 N -0.702 5.702 15 C 0.506 3.494 16 O -0.585 6.585 17 C -0.057 4.057 18 C -0.182 4.182 19 C 0.024 3.976 20 O -0.202 6.202 21 C 0.022 3.978 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.141 4.141 25 C -0.096 4.096 26 C -0.140 4.140 27 C 0.184 3.816 28 H 0.243 0.757 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.248 0.752 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.113 0.887 41 H 0.017 0.983 42 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -14.575 -13.429 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.352 5.352 10 C -0.001 4.001 11 C -0.155 4.155 12 C 0.023 3.977 13 H 0.094 0.906 14 N -0.354 5.354 15 C 0.293 3.707 16 O -0.464 6.464 17 C -0.096 4.096 18 C -0.184 4.184 19 C -0.041 4.041 20 O -0.104 6.104 21 C -0.025 4.025 22 C -0.131 4.131 23 C -0.113 4.113 24 C -0.159 4.159 25 C -0.114 4.114 26 C -0.141 4.141 27 C 0.057 3.943 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.251 0.749 34 H 0.130 0.870 35 H 0.170 0.830 36 H 0.264 0.736 37 H 0.174 0.826 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.131 0.869 41 H 0.035 0.965 42 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -5.674 -14.168 -13.120 20.126 hybrid contribution 0.731 1.493 0.251 1.682 sum -4.942 -12.675 -12.869 18.727 Atomic orbital electron populations 1.70238 1.06654 1.25058 1.58284 1.25713 0.96361 1.01363 1.02871 0.85118 0.77699 0.79053 0.77658 1.21341 1.22549 1.18729 1.19499 0.91575 0.83965 1.41906 0.89420 1.44810 1.05301 1.01691 1.83444 1.21920 0.95401 0.84075 0.98660 1.23012 0.93041 0.99647 0.99842 1.21946 0.99482 0.93654 0.82659 0.90628 1.45800 1.14151 1.62734 1.12700 1.21272 0.82677 0.77870 0.88837 1.90716 1.34341 1.46405 1.74985 1.20019 0.93952 1.06094 0.89522 1.20744 0.98609 0.92986 1.06061 1.24454 0.83049 1.00465 0.96087 1.83969 1.39501 1.23732 1.63152 1.20014 0.95298 0.85005 1.02172 1.20343 1.00882 0.90927 1.00920 1.21325 0.95053 0.95877 0.99011 1.21121 0.95401 0.99886 0.99443 1.20473 1.00431 0.92019 0.98475 1.20129 0.95438 0.95954 1.02567 1.21199 0.85106 0.91751 0.96216 0.94782 0.94273 0.93293 0.90147 0.86537 0.74950 0.87022 0.83027 0.73572 0.82617 0.81352 0.83761 0.86897 0.96451 0.99731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 10.46 21.65 0.23 -60.64 16 2 C -0.07 -4.13 5.45 84.86 0.46 -3.67 16 3 Si 0.98 46.94 29.56 68.60 2.03 48.97 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.57 10.26 84.03 0.86 -12.71 16 8 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 9 N -0.63 -31.98 3.39 -691.54 -2.35 -34.33 16 10 C 0.12 4.55 7.22 86.93 0.63 5.18 16 11 C -0.12 -3.48 6.66 32.06 0.21 -3.26 16 12 C 0.13 4.84 3.24 46.18 0.15 4.99 16 13 H 0.08 3.03 7.69 -2.39 -0.02 3.01 16 14 N -0.70 -21.18 5.12 -436.93 -2.24 -23.41 16 15 C 0.51 16.53 7.82 87.66 0.69 17.22 16 16 O -0.58 -25.89 15.76 -3.04 -0.05 -25.93 16 17 C -0.06 -1.25 6.25 29.10 0.18 -1.07 16 18 C -0.18 -4.92 4.85 -18.59 -0.09 -5.01 16 19 C 0.02 0.54 11.89 66.86 0.79 1.33 16 20 O -0.20 -5.46 10.58 -8.96 -0.09 -5.56 16 21 C 0.02 0.64 7.42 22.99 0.17 0.81 16 22 C -0.11 -2.65 10.07 22.35 0.23 -2.43 16 23 C -0.10 -2.05 10.01 22.30 0.22 -1.83 16 24 C -0.14 -3.63 9.98 22.04 0.22 -3.41 16 25 C -0.10 -3.00 10.05 22.20 0.22 -2.77 16 26 C -0.14 -4.42 6.38 -20.21 -0.13 -4.55 16 27 C 0.18 9.58 5.18 86.73 0.45 10.03 16 28 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.41 9.26 8.63 -92.71 -0.80 8.46 16 34 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.25 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.02 1.07 6.88 -2.39 -0.02 1.05 16 42 H -0.02 -0.94 7.88 -2.39 -0.02 -0.96 16 Total: -1.00 -85.81 355.30 3.04 -82.77 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.24 Total: 19.29 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.27 Total: -1.15 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -4.36 Total: -118.39 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.14 Total: -31.49 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -85.81 3.04 -82.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015901841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.551 kcal (2) G-P(sol) polarization free energy of solvation -85.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds