Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28463 * 124.88732 * 2 1 4 4 C 1.31803 * 110.07632 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.52227 * 179.97438 * 4 3 2 6 6 O 1.21564 * 119.99998 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99534 * 0.02604 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68850 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.08997 * 111.00368 * 277.43464 * 10 9 8 12 12 N 1.46494 * 111.00703 * 153.57480 * 10 9 8 13 13 C 1.36939 * 120.00123 * 161.35006 * 12 10 9 14 14 H 1.07994 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 10 16 16 N 1.31616 * 120.00205 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99543 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47193 * 60.00591 * 17 15 13 19 19 H 1.48504 * 109.47050 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47422 * 300.00233 * 17 15 13 21 21 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 22 22 C 1.41498 * 106.96351 * 0.22554 * 4 3 2 23 23 C 1.35040 * 124.88445 * 179.97438 * 2 1 3 24 24 C 1.50704 * 126.38029 * 0.03412 * 23 2 1 25 25 F 1.39899 * 109.46823 * 209.99820 * 24 23 2 26 26 F 1.39894 * 109.47746 * 329.99965 * 24 23 2 27 27 H 1.09000 * 109.47034 * 89.97234 * 1 2 3 28 28 H 1.08993 * 109.47202 * 209.97542 * 1 2 3 29 29 H 1.08999 * 109.46889 * 329.97576 * 1 2 3 30 30 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 31 31 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 32 32 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 33 33 H 1.09000 * 110.86856 * 96.24526 * 9 8 7 34 34 H 0.97002 * 119.99809 * 341.35145 * 12 10 9 35 35 H 0.96999 * 120.00274 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.36518 * 322.69812 * 21 7 5 37 37 H 1.08995 * 110.36673 * 84.90922 * 21 7 5 38 38 H 1.08005 * 127.25472 * 179.75518 * 22 4 3 39 39 H 1.09000 * 109.46703 * 90.00391 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7168 0.0006 5 6 4.6274 1.6397 0.0002 6 8 5.7597 1.1975 0.0003 7 7 4.4242 2.9721 -0.0002 8 6 3.1139 3.6391 -0.0069 9 6 3.3740 5.1601 0.0156 10 6 4.8059 5.2592 0.6048 11 1 4.7851 5.2052 1.6933 12 7 5.4757 6.4817 0.1544 13 6 6.5656 6.9557 0.8346 14 1 6.9316 6.4281 1.7029 15 6 7.1999 8.1145 0.4080 16 7 6.7535 8.7578 -0.6499 17 14 8.6862 8.7614 1.3363 18 1 9.7621 7.7379 1.3232 19 1 9.1753 10.0028 0.6843 20 1 8.3025 9.0583 2.7398 21 6 5.4790 4.0021 -0.0001 22 6 3.5272 -0.6971 -0.0044 23 6 2.2374 -1.1077 0.0005 24 6 1.7533 -2.5349 0.0004 25 9 2.6850 -3.3433 0.6604 26 9 0.5215 -2.6097 0.6593 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 2.5657 3.3701 -0.9097 31 1 2.5449 3.3472 0.8758 32 1 2.6555 5.6646 0.6616 33 1 3.3420 5.5745 -0.9920 34 1 5.1472 6.9555 -0.6257 35 1 7.1969 9.5673 -0.9482 36 1 6.3180 3.6857 0.6196 37 1 5.8142 4.2020 -1.0178 38 1 4.4108 -1.3182 -0.0091 39 1 1.6372 -2.8791 -1.0273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019147813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -26.517094 kcal Electronic energy + Delta-G solvation = -25787.836448 eV Core-core repulsion = 21597.027128 eV Total energy + Delta-G solvation = -4190.809320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.66467 -47.68391 -43.02812 -39.49118 -37.19849 -34.18646 -33.76981 -32.37031 -31.43750 -29.58044 -28.34709 -27.40769 -26.30656 -24.42513 -23.05906 -22.10698 -21.31324 -20.13124 -19.36705 -18.25162 -17.95790 -17.60861 -17.18655 -16.79768 -16.58741 -15.81132 -15.56222 -15.18033 -14.65176 -14.47507 -14.31821 -14.06620 -13.96983 -13.50047 -13.38616 -13.18003 -13.07114 -12.85248 -12.72314 -12.35087 -12.17243 -12.00093 -11.58108 -11.10042 -11.02328 -10.78791 -10.68155 -10.29497 -10.04558 -9.94841 -9.73013 -9.65958 -9.41696 -8.98970 -8.29779 -7.06180 -5.81895 -3.12527 1.23064 1.64895 1.94054 2.92970 3.26655 3.43887 3.44641 3.48492 3.48872 3.50112 3.85333 4.13557 4.26007 4.55553 4.60583 4.62909 4.94112 4.97278 5.04766 5.11066 5.32217 5.36995 5.40890 5.61418 5.74833 5.86852 5.99273 6.05460 6.16379 6.21560 6.30460 6.43653 6.57347 6.65217 6.92020 7.46741 7.67832 7.77638 8.33369 8.36449 9.47816 10.00952 10.36104 11.40156 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.033315 B = 0.002568 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.261515 B =10899.608016 C =11494.086703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.263 5.263 3 N -0.232 5.232 4 C -0.005 4.005 5 C 0.609 3.391 6 O -0.536 6.536 7 N -0.599 5.599 8 C 0.115 3.885 9 C -0.141 4.141 10 C 0.172 3.828 11 H 0.065 0.935 12 N -0.712 5.712 13 C -0.248 4.248 14 H 0.073 0.927 15 C -0.009 4.009 16 N -0.931 5.931 17 Si 0.909 3.091 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.083 3.917 22 C -0.129 4.129 23 C -0.085 4.085 24 C 0.355 3.645 25 F -0.183 7.183 26 F -0.197 7.197 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.171 0.829 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.731 -22.204 -0.800 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.052 5.052 3 N -0.069 5.069 4 C -0.164 4.164 5 C 0.395 3.605 6 O -0.412 6.412 7 N -0.332 5.332 8 C -0.008 4.008 9 C -0.180 4.180 10 C 0.060 3.940 11 H 0.083 0.917 12 N -0.352 5.352 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.042 4.042 22 C -0.158 4.158 23 C -0.210 4.210 24 C 0.300 3.700 25 F -0.164 7.164 26 F -0.179 7.179 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.189 0.811 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.812 -21.504 -0.656 27.931 hybrid contribution 1.075 -0.192 0.249 1.120 sum -16.737 -21.697 -0.407 27.405 Atomic orbital electron populations 1.22622 0.72540 1.07042 1.05117 1.45328 1.07955 1.01794 1.50171 1.73790 1.03224 1.12456 1.17423 1.22036 0.90858 0.93718 1.09831 1.16426 0.86213 0.80357 0.77532 1.90804 1.22419 1.76320 1.51624 1.48367 1.09779 1.04380 1.70659 1.22000 0.84586 0.92525 1.01688 1.22938 0.99012 0.93544 1.02529 1.21310 0.89375 0.86355 0.96995 0.91741 1.42300 1.33981 1.24392 1.34483 1.19224 1.04533 1.05859 1.08267 0.90950 1.24765 0.99687 0.97988 0.98079 1.69647 1.42583 1.19683 1.25953 0.86242 0.82681 0.78114 0.78999 1.21059 1.21654 1.21156 1.23481 0.90760 0.87777 1.02172 1.21556 0.95991 0.93944 1.04288 1.21706 0.92672 0.90663 1.15928 1.19614 0.72544 0.84399 0.93439 1.93067 1.65934 1.73711 1.83697 1.92911 1.44266 1.96483 1.84193 0.89314 0.87060 0.87953 0.91573 0.91368 0.90252 0.90493 0.77832 0.93312 0.90852 0.91150 0.81134 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.04 59.85 0.66 0.99 16 2 N -0.26 -2.50 3.70 -63.85 -0.24 -2.74 16 3 N -0.23 -2.90 9.50 33.42 0.32 -2.58 16 4 C -0.01 -0.08 6.98 -82.77 -0.58 -0.66 16 5 C 0.61 10.78 7.86 -12.39 -0.10 10.69 16 6 O -0.54 -11.06 17.18 5.31 0.09 -10.97 16 7 N -0.60 -10.31 3.33 -171.69 -0.57 -10.88 16 8 C 0.12 1.66 5.54 -3.06 -0.02 1.64 16 9 C -0.14 -2.20 6.58 -24.90 -0.16 -2.37 16 10 C 0.17 3.38 3.68 -65.79 -0.24 3.14 16 11 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 12 N -0.71 -17.40 5.28 -51.36 -0.27 -17.67 16 13 C -0.25 -6.79 9.98 -15.06 -0.15 -6.94 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.08 1.62 6.60 -2.54 -0.02 1.60 16 22 C -0.13 -1.56 10.41 -39.37 -0.41 -1.97 16 23 C -0.09 -0.80 6.66 -82.20 -0.55 -1.34 16 24 C 0.36 2.19 5.72 36.01 0.21 2.40 16 25 F -0.18 -1.52 17.06 2.25 0.04 -1.48 16 26 F -0.20 -1.25 14.49 2.25 0.03 -1.22 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.11 0.42 5.44 -51.93 -0.28 0.14 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 31 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.21 7.99 -51.93 -0.42 0.79 16 34 H 0.39 9.95 7.71 -40.82 -0.31 9.63 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.17 1.91 8.06 -52.48 -0.42 1.48 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -33.92 338.66 -5.98 -39.90 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.74 Total: 5.38 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.45 Total: 6.83 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.04 Total: -60.82 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.92 -5.98 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019147813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.380 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds