Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28463 * 124.88732 * 2 1 4 4 C 1.31803 * 110.07632 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.52227 * 179.97438 * 4 3 2 6 6 O 1.21564 * 119.99998 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99534 * 0.02604 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68850 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.08997 * 111.00368 * 277.43464 * 10 9 8 12 12 N 1.46494 * 111.00703 * 153.57480 * 10 9 8 13 13 C 1.36939 * 120.00123 * 161.35006 * 12 10 9 14 14 H 1.07994 * 119.99672 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 10 16 16 N 1.31616 * 120.00205 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99543 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47193 * 60.00591 * 17 15 13 19 19 H 1.48504 * 109.47050 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47422 * 300.00233 * 17 15 13 21 21 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 22 22 C 1.41498 * 106.96351 * 0.22554 * 4 3 2 23 23 C 1.35040 * 124.88445 * 179.97438 * 2 1 3 24 24 C 1.50704 * 126.38029 * 0.03412 * 23 2 1 25 25 F 1.39899 * 109.46823 * 209.99820 * 24 23 2 26 26 F 1.39894 * 109.47746 * 329.99965 * 24 23 2 27 27 H 1.09000 * 109.47034 * 89.97234 * 1 2 3 28 28 H 1.08993 * 109.47202 * 209.97542 * 1 2 3 29 29 H 1.08999 * 109.46889 * 329.97576 * 1 2 3 30 30 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 31 31 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 32 32 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 33 33 H 1.09000 * 110.86856 * 96.24526 * 9 8 7 34 34 H 0.97002 * 119.99809 * 341.35145 * 12 10 9 35 35 H 0.96999 * 120.00274 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.36518 * 322.69812 * 21 7 5 37 37 H 1.08995 * 110.36673 * 84.90922 * 21 7 5 38 38 H 1.08005 * 127.25472 * 179.75518 * 22 4 3 39 39 H 1.09000 * 109.46703 * 90.00391 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7168 0.0006 5 6 4.6274 1.6397 0.0002 6 8 5.7597 1.1975 0.0003 7 7 4.4242 2.9721 -0.0002 8 6 3.1139 3.6391 -0.0069 9 6 3.3740 5.1601 0.0156 10 6 4.8059 5.2592 0.6048 11 1 4.7851 5.2052 1.6933 12 7 5.4757 6.4817 0.1544 13 6 6.5656 6.9557 0.8346 14 1 6.9316 6.4281 1.7029 15 6 7.1999 8.1145 0.4080 16 7 6.7535 8.7578 -0.6499 17 14 8.6862 8.7614 1.3363 18 1 9.7621 7.7379 1.3232 19 1 9.1753 10.0028 0.6843 20 1 8.3025 9.0583 2.7398 21 6 5.4790 4.0021 -0.0001 22 6 3.5272 -0.6971 -0.0044 23 6 2.2374 -1.1077 0.0005 24 6 1.7533 -2.5349 0.0004 25 9 2.6850 -3.3433 0.6604 26 9 0.5215 -2.6097 0.6593 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 2.5657 3.3701 -0.9097 31 1 2.5449 3.3472 0.8758 32 1 2.6555 5.6646 0.6616 33 1 3.3420 5.5745 -0.9920 34 1 5.1472 6.9555 -0.6257 35 1 7.1969 9.5673 -0.9482 36 1 6.3180 3.6857 0.6196 37 1 5.8142 4.2020 -1.0178 38 1 4.4108 -1.3182 -0.0091 39 1 1.6372 -2.8791 -1.0273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019147813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -50.079696 kcal Electronic energy + Delta-G solvation = -25788.858199 eV Core-core repulsion = 21597.027128 eV Total energy + Delta-G solvation = -4191.831071 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.17116 -48.20445 -43.88550 -40.89856 -38.70093 -35.98479 -34.62671 -33.45539 -32.94862 -31.15956 -29.58136 -28.41004 -27.10775 -26.00818 -24.59675 -23.22185 -22.14904 -21.69588 -20.45338 -19.38751 -18.82619 -18.65435 -18.13539 -17.84730 -17.55646 -17.11663 -16.56174 -16.40813 -16.24781 -15.53078 -15.27791 -15.19948 -14.86515 -14.84825 -14.62406 -14.33838 -14.02348 -13.90221 -13.78678 -13.56280 -13.18905 -13.16439 -12.86745 -12.67341 -12.56502 -12.39079 -12.11978 -11.97745 -11.76326 -11.61335 -11.38545 -10.99822 -10.48903 -10.30026 -9.72309 -9.09368 -7.97627 -5.27867 0.32022 0.66562 1.24922 1.47793 1.50397 1.56212 1.84491 2.18251 2.49003 2.55858 3.01034 3.07988 3.32773 3.41407 3.62856 3.76754 3.87765 3.97267 4.09431 4.23020 4.26288 4.34066 4.35820 4.37805 4.52657 4.54064 4.67935 4.71363 4.86367 4.99738 5.01496 5.15615 5.21820 5.35234 5.49597 5.52804 6.23919 6.39256 6.58461 6.98383 7.31479 8.01772 8.27132 9.24866 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.033315 B = 0.002568 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.261515 B =10899.608016 C =11494.086703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.250 5.250 3 N -0.236 5.236 4 C -0.037 4.037 5 C 0.605 3.395 6 O -0.578 6.578 7 N -0.602 5.602 8 C 0.125 3.875 9 C -0.128 4.128 10 C 0.167 3.833 11 H 0.063 0.937 12 N -0.722 5.722 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.068 4.068 16 N -0.965 5.965 17 Si 0.971 3.029 18 H -0.282 1.282 19 H -0.293 1.293 20 H -0.276 1.276 21 C 0.094 3.906 22 C -0.150 4.150 23 C -0.070 4.070 24 C 0.359 3.641 25 F -0.196 7.196 26 F -0.195 7.195 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.379 0.621 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.169 0.831 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.404 -23.830 -0.541 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.040 5.040 3 N -0.075 5.075 4 C -0.194 4.194 5 C 0.393 3.607 6 O -0.457 6.457 7 N -0.334 5.334 8 C 0.002 3.998 9 C -0.166 4.166 10 C 0.056 3.944 11 H 0.081 0.919 12 N -0.361 5.361 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.219 1.219 20 H -0.202 1.202 21 C -0.032 4.032 22 C -0.178 4.178 23 C -0.196 4.196 24 C 0.304 3.696 25 F -0.177 7.177 26 F -0.176 7.176 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.187 0.813 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.536 -23.164 -0.372 30.959 hybrid contribution 1.758 0.190 0.184 1.778 sum -18.777 -22.974 -0.188 29.672 Atomic orbital electron populations 1.23083 0.69594 1.08288 1.07271 1.45809 1.09424 1.01171 1.47619 1.73688 1.02463 1.13689 1.17627 1.21551 0.90684 0.93951 1.13170 1.16900 0.86822 0.80571 0.76402 1.90761 1.24413 1.77060 1.53496 1.48390 1.10108 1.04198 1.70661 1.22082 0.83303 0.91106 1.03266 1.22874 0.96381 0.94745 1.02617 1.21436 0.91581 0.84390 0.96958 0.91928 1.42402 1.33773 1.25790 1.34119 1.19565 1.04991 1.05555 1.08040 0.90806 1.25526 1.02578 0.98681 0.99253 1.69786 1.43973 1.20092 1.27572 0.85261 0.79526 0.77178 0.78084 1.20813 1.21932 1.20176 1.23067 0.90962 0.88678 1.00517 1.21645 0.97511 0.93060 1.05586 1.22110 0.91657 0.92272 1.13525 1.20062 0.71941 0.82158 0.95414 1.93047 1.66646 1.73807 1.84237 1.92916 1.43966 1.96300 1.84465 0.86673 0.85536 0.87062 0.89892 0.89763 0.88019 0.90508 0.78786 0.93812 0.93148 0.92940 0.81305 0.80002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.04 127.77 1.41 1.72 16 2 N -0.25 -3.99 3.70 -355.92 -1.32 -5.30 16 3 N -0.24 -5.41 9.50 -48.18 -0.46 -5.87 16 4 C -0.04 -1.06 6.98 42.46 0.30 -0.76 16 5 C 0.61 21.95 7.86 86.75 0.68 22.63 16 6 O -0.58 -25.06 17.18 -3.92 -0.07 -25.13 16 7 N -0.60 -20.88 3.33 -815.37 -2.71 -23.60 16 8 C 0.12 3.38 5.54 86.73 0.48 3.86 16 9 C -0.13 -3.80 6.58 31.78 0.21 -3.59 16 10 C 0.17 6.61 3.68 46.38 0.17 6.78 16 11 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 12 N -0.72 -35.88 5.28 -316.42 -1.67 -37.54 16 13 C -0.25 -13.87 9.98 84.03 0.84 -13.03 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 16 N -0.96 -58.33 13.06 21.65 0.28 -58.04 16 17 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.09 3.78 6.60 86.85 0.57 4.36 16 22 C -0.15 -3.51 10.41 22.41 0.23 -3.27 16 23 C -0.07 -1.13 6.66 41.40 0.28 -0.85 16 24 C 0.36 3.15 5.72 71.24 0.41 3.56 16 25 F -0.20 -2.80 17.06 44.97 0.77 -2.03 16 26 F -0.20 -1.72 14.49 44.97 0.65 -1.06 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.13 0.40 5.44 -2.39 -0.01 0.39 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 2.02 7.77 -2.39 -0.02 2.01 16 31 H 0.08 2.06 7.66 -2.39 -0.02 2.04 16 32 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 2.32 7.99 -2.39 -0.02 2.30 16 34 H 0.38 19.87 7.71 -92.71 -0.71 19.16 16 35 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 36 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -75.95 338.66 3.93 -72.02 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.38 Total: 20.17 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 6.04 Total: 18.01 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.87 Total: -130.36 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 1.42 Total: -3.09 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.95 3.93 -72.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019147813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds