Wall clock time and date at job start Tue Mar 31 2020 11:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.64148 * 328.13692 * 10 9 7 12 12 C 1.55158 * 110.72344 * 91.47427 * 10 9 7 13 13 C 1.54911 * 101.58207 * 153.86380 * 12 10 9 14 14 N 1.47428 * 104.83212 * 322.99455 * 13 12 10 15 15 C 1.34781 * 125.64580 * 204.08722 * 14 13 12 16 16 O 1.21275 * 119.99714 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99694 * 0.04642 * 15 14 13 18 18 C 1.50707 * 109.46829 * 179.97438 * 17 15 14 19 19 C 1.33998 * 124.92304 * 89.71596 * 18 17 15 20 20 C 1.46782 * 106.18751 * 179.90056 * 19 18 17 21 21 C 1.39399 * 134.37064 * 180.11996 * 20 19 18 22 22 C 1.36738 * 119.71388 * 180.26782 * 21 20 19 23 23 C 1.38747 * 120.41941 * 359.97438 * 22 21 20 24 24 C 1.37850 * 120.68514 * 0.02562 * 23 22 21 25 25 C 1.38946 * 119.81552 * 0.02562 * 24 23 22 26 26 O 1.34445 * 124.92207 * 270.02690 * 18 17 15 27 27 C 1.47016 * 108.70168 * 24.12867 * 14 13 12 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.08994 * 111.00656 * 271.94068 * 12 10 9 31 31 H 1.09005 * 111.00008 * 35.79406 * 12 10 9 32 32 H 1.08994 * 110.37122 * 204.15357 * 13 12 10 33 33 H 1.09003 * 110.36559 * 81.82919 * 13 12 10 34 34 H 1.08997 * 109.47026 * 299.99059 * 17 15 14 35 35 H 1.08993 * 109.47689 * 59.99716 * 17 15 14 36 36 H 1.08005 * 126.90211 * 0.03119 * 19 18 17 37 37 H 1.07997 * 120.14462 * 0.28211 * 21 20 19 38 38 H 1.08004 * 119.78970 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.65596 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.08829 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.87633 * 239.51978 * 27 14 13 42 42 H 1.08997 * 110.01376 * 118.43586 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9982 -3.5577 -0.5376 12 6 2.3056 -4.1478 1.4556 13 6 2.4224 -5.6787 1.2502 14 7 1.4370 -5.9949 0.2002 15 6 0.8546 -7.1946 0.0051 16 8 0.0546 -7.3412 -0.8945 17 6 1.1973 -8.3537 0.9052 18 6 0.4156 -9.5694 0.4782 19 6 0.8307 -10.4713 -0.4218 20 6 -0.2381 -11.4724 -0.5208 21 6 -0.4150 -12.6394 -1.2625 22 6 -1.5657 -13.3644 -1.1212 23 6 -2.5565 -12.9459 -0.2447 24 6 -2.3993 -11.7946 0.4969 25 6 -1.2380 -11.0427 0.3676 26 8 -0.8019 -9.9031 0.9407 27 6 1.1957 -4.7851 -0.5995 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 3.2322 -3.7353 1.8548 31 1 1.4613 -3.9034 2.1002 32 1 2.1762 -6.2051 2.1723 33 1 3.4271 -5.9415 0.9190 34 1 2.2644 -8.5647 0.8355 35 1 0.9432 -8.1019 1.9347 36 1 1.7650 -10.4641 -0.9636 37 1 0.3536 -12.9696 -1.9455 38 1 -1.7038 -14.2690 -1.6949 39 1 -3.4607 -13.5278 -0.1431 40 1 -3.1769 -11.4776 1.1760 41 1 0.1413 -4.5126 -0.5505 42 1 1.4856 -4.9588 -1.6357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019215361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:34 Heat of formation + Delta-G solvation = 13.719949 kcal Electronic energy + Delta-G solvation = -24666.298827 eV Core-core repulsion = 20999.171095 eV Total energy + Delta-G solvation = -3667.127732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.62302 -39.86151 -38.09804 -37.34837 -34.19747 -33.48658 -31.95632 -31.23327 -30.60242 -29.59186 -28.36808 -27.00838 -23.90384 -23.17354 -22.82636 -22.03240 -21.32142 -20.13091 -19.22930 -17.54237 -17.48775 -17.28105 -16.97541 -16.10057 -15.92559 -15.74545 -15.01274 -14.75419 -14.35410 -14.15248 -13.89089 -13.56184 -13.32209 -13.27699 -13.16785 -12.61355 -12.51650 -12.41634 -12.36520 -12.02814 -11.80692 -11.71037 -11.24301 -11.13188 -10.88919 -10.76446 -10.37196 -10.31765 -10.10350 -9.86430 -9.76943 -9.01885 -8.80582 -8.49054 -8.31952 -7.09059 -5.85851 -3.16907 0.69867 1.17388 2.10257 2.47480 2.65278 3.14658 3.38239 3.43803 3.46328 3.52688 4.09412 4.45418 4.50638 4.51244 4.70232 4.81341 4.90106 4.91273 4.97046 5.03513 5.16410 5.22078 5.25313 5.31309 5.50872 5.51003 5.52968 5.65504 5.71090 5.89975 6.00670 6.04500 6.08447 6.20254 6.21546 6.24607 6.31456 6.46357 6.49505 6.55440 6.84101 7.02374 7.60811 7.62318 8.19210 8.31314 9.42842 9.96818 10.31206 11.36280 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002169 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.321784 B =12908.485706 C =13183.331365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.156 4.156 13 C 0.095 3.905 14 N -0.611 5.611 15 C 0.525 3.475 16 O -0.533 6.533 17 C -0.064 4.064 18 C 0.061 3.939 19 C -0.195 4.195 20 C -0.127 4.127 21 C -0.072 4.072 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.106 4.106 25 C 0.056 3.944 26 O -0.188 6.188 27 C 0.100 3.900 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -26.151 2.925 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.197 4.197 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.313 3.687 16 O -0.410 6.410 17 C -0.104 4.104 18 C 0.013 3.987 19 C -0.214 4.214 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.157 4.157 23 C -0.116 4.116 24 C -0.125 4.125 25 C 0.009 3.991 26 O -0.089 6.089 27 C -0.024 4.024 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.175 0.825 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.909 -25.963 2.595 26.162 hybrid contribution 0.220 0.973 0.001 0.997 sum 2.129 -24.990 2.596 25.215 Atomic orbital electron populations 1.69679 1.05180 1.25828 1.56942 1.24797 0.95544 0.97894 1.02489 0.86090 0.78758 0.83889 0.77236 1.20458 1.21780 1.21797 1.19266 0.91084 0.83778 1.43568 0.90846 1.42387 1.05855 0.99395 1.87929 1.21188 0.94575 0.85684 0.92546 0.91430 1.23581 1.02888 0.91551 1.01672 1.22472 0.91827 0.98311 0.90208 1.48443 1.43079 1.09694 1.33329 1.19840 0.81181 0.82537 0.85188 1.90762 1.34127 1.82998 1.33120 1.20232 1.00162 0.88482 1.01516 1.21419 0.84017 0.96387 0.96878 1.22154 1.01178 0.95684 1.02380 1.19934 0.95139 0.97525 1.00156 1.20283 0.97860 0.92823 0.98019 1.20760 0.94068 1.00723 1.00142 1.20907 0.99377 0.95393 0.95894 1.19965 0.94810 0.94947 1.02743 1.19614 0.96464 0.87021 0.96034 1.83934 1.30794 1.36529 1.57635 1.22377 1.01505 0.83767 0.94708 0.93358 0.77920 0.90392 0.90587 0.91161 0.91315 0.85513 0.86673 0.82491 0.85576 0.85439 0.84859 0.85059 0.91074 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.16 5.22 -51.65 -0.27 -17.43 16 10 C 0.17 3.17 3.61 -66.10 -0.24 2.93 16 11 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 12 C -0.16 -2.36 6.77 -24.58 -0.17 -2.53 16 13 C 0.09 1.10 6.69 -2.53 -0.02 1.08 16 14 N -0.61 -8.93 3.33 -170.52 -0.57 -9.50 16 15 C 0.53 7.90 7.84 -10.98 -0.09 7.81 16 16 O -0.53 -10.45 16.36 5.56 0.09 -10.36 16 17 C -0.06 -0.67 5.21 -29.03 -0.15 -0.82 16 18 C 0.06 0.79 5.72 -35.80 -0.20 0.58 16 19 C -0.19 -2.37 11.01 -37.62 -0.41 -2.78 16 20 C -0.13 -1.59 6.40 -105.16 -0.67 -2.27 16 21 C -0.07 -0.72 10.05 -39.69 -0.40 -1.12 16 22 C -0.14 -1.18 9.98 -39.94 -0.40 -1.58 16 23 C -0.10 -0.84 10.01 -39.54 -0.40 -1.23 16 24 C -0.11 -1.13 10.07 -39.46 -0.40 -1.52 16 25 C 0.06 0.75 7.42 -38.47 -0.29 0.46 16 26 O -0.19 -2.72 10.58 3.92 0.04 -2.68 16 27 C 0.10 1.74 6.62 -3.07 -0.02 1.72 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.39 10.05 7.56 -40.82 -0.31 9.74 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 0.63 7.48 -51.93 -0.39 0.25 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 0.98 7.85 -51.93 -0.41 0.58 16 36 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.07 1.39 7.72 -51.92 -0.40 0.99 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -34.06 358.12 -9.40 -43.46 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.70 Total: 7.54 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.09 Total: -6.34 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.13 Total: -13.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.06 -9.40 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019215361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.181 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds