Wall clock time and date at job start Tue Mar 31 2020 11:42:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 120.00125 * 2 1
4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1
5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1
7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1
9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1
10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2
11 11 H 1.08997 * 110.89071 * 322.57726 * 10 9 7
12 12 C 1.55164 * 111.00115 * 86.45508 * 10 9 7
13 13 C 1.54324 * 102.93878 * 153.57413 * 12 10 9
14 14 N 1.47025 * 107.27511 * 337.80517 * 13 12 10
15 15 C 1.34769 * 125.64727 * 178.92140 * 14 13 12
16 16 O 1.21288 * 120.00014 * 180.02562 * 15 14 13
17 17 C 1.50702 * 120.00075 * 0.02562 * 15 14 13
18 18 C 1.50704 * 109.46988 * 180.02562 * 17 15 14
19 19 C 1.33999 * 126.90479 * 264.68705 * 18 17 15
20 20 O 1.34454 * 110.14971 * 179.89008 * 19 18 17
21 21 C 1.34811 * 110.88934 * 0.39211 * 20 19 18
22 22 C 1.38938 * 133.49087 * 179.77202 * 21 20 19
23 23 C 1.37850 * 119.81552 * 180.02562 * 22 21 20
24 24 C 1.38744 * 120.68499 * 359.95296 * 23 22 21
25 25 C 1.36739 * 120.41701 * 0.04543 * 24 23 22
26 26 C 1.39406 * 119.71504 * 359.97438 * 25 24 23
27 27 C 1.47425 * 108.69807 * 358.94199 * 14 13 12
28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3
29 29 H 0.96999 * 120.00117 * 359.97438 * 9 7 2
30 30 H 1.08994 * 110.71690 * 271.93560 * 12 10 9
31 31 H 1.08994 * 110.72044 * 35.03368 * 12 10 9
32 32 H 1.09003 * 109.87897 * 97.22490 * 13 12 10
33 33 H 1.09000 * 109.87664 * 218.23044 * 13 12 10
34 34 H 1.08994 * 109.47165 * 299.99950 * 17 15 14
35 35 H 1.09002 * 109.46855 * 60.00671 * 17 15 14
36 36 H 1.07995 * 124.92630 * 0.02562 * 19 18 17
37 37 H 1.07997 * 120.09604 * 0.02562 * 22 21 20
38 38 H 1.08005 * 119.65988 * 179.97438 * 23 22 21
39 39 H 1.08005 * 119.79171 * 180.02562 * 24 23 22
40 40 H 1.08003 * 120.14073 * 179.97438 * 25 24 23
41 41 H 1.09000 * 110.36918 * 265.28562 * 27 14 13
42 42 H 1.09005 * 110.36380 * 142.97099 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2021 -0.0040
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 1 2.9528 -3.5890 -0.6183
12 6 2.4138 -4.0936 1.4463
13 6 2.5173 -5.6288 1.3279
14 7 1.7447 -6.0283 0.1425
15 6 1.6048 -7.2879 -0.3159
16 8 0.9412 -7.5018 -1.3084
17 6 2.2727 -8.4306 0.4047
18 6 1.9618 -9.7228 -0.3058
19 6 0.9813 -10.5873 -0.0112
20 8 1.0089 -11.6269 -0.8635
21 6 2.0153 -11.4946 -1.7506
22 6 2.4665 -12.2746 -2.8081
23 6 3.5517 -11.8609 -3.5507
24 6 4.2000 -10.6705 -3.2545
25 6 3.7717 -9.8883 -2.2180
26 6 2.6762 -10.2906 -1.4555
27 6 1.1491 -4.8227 -0.4618
28 1 -0.4850 0.8400 0.0004
29 1 0.3556 -2.3880 0.0005
30 1 3.3674 -3.6654 1.7549
31 1 1.6227 -3.8101 2.1404
32 1 3.5602 -5.9217 1.2068
33 1 2.1017 -6.0981 2.2196
34 1 3.3511 -8.2727 0.4155
35 1 1.9024 -8.4804 1.4287
36 1 0.2704 -10.4655 0.7926
37 1 1.9686 -13.2025 -3.0476
38 1 3.9006 -12.4694 -4.3720
39 1 5.0486 -10.3600 -3.8461
40 1 4.2800 -8.9627 -1.9911
41 1 0.1321 -4.6785 -0.0972
42 1 1.1556 -4.9007 -1.5491
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001019562964.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:38
Heat of formation + Delta-G solvation = 12.235356 kcal
Electronic energy + Delta-G solvation = -24954.098109 eV
Core-core repulsion = 21286.906000 eV
Total energy + Delta-G solvation = -3667.192109 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.61090 -39.77889 -38.01428 -37.35084 -34.17432 -34.02966 -31.62841 -30.75685
-30.09734 -29.56259 -28.60754 -27.07597 -23.76914 -23.46449 -22.82376 -22.46911
-20.65902 -20.08694 -18.96869 -17.53756 -17.37436 -17.16889 -16.97207 -16.12445
-16.05442 -15.90399 -15.02594 -14.71903 -14.32349 -14.15903 -13.96195 -13.62417
-13.28690 -13.25078 -12.84459 -12.72898 -12.49256 -12.44163 -12.24775 -12.00357
-11.75254 -11.63336 -11.18844 -11.06200 -10.86525 -10.72275 -10.35260 -10.24814
-10.10889 -9.80057 -9.64409 -8.98565 -8.79409 -8.43629 -8.31280 -7.08081
-5.84886 -3.15741 0.75448 1.20181 2.11336 2.63971 2.74651 3.18492
3.39470 3.44378 3.45301 3.57274 4.26392 4.36162 4.52159 4.65837
4.66508 4.78070 4.88507 5.01171 5.13057 5.19511 5.23360 5.27886
5.30410 5.33093 5.43720 5.53866 5.57130 5.70592 5.74624 5.94165
6.04388 6.08910 6.11440 6.21159 6.23293 6.27987 6.34458 6.45675
6.52439 6.58450 6.88039 6.99755 7.62012 7.70248 8.30008 8.32860
9.43965 9.97883 10.32772 11.37247
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.027479 B = 0.002414 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1018.730755 B =11595.679780 C =11966.748379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.010 4.010
3 Si 0.910 3.090
4 H -0.285 1.285
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.245 4.245
8 H 0.072 0.928
9 N -0.715 5.715
10 C 0.172 3.828
11 H 0.062 0.938
12 C -0.155 4.155
13 C 0.100 3.900
14 N -0.614 5.614
15 C 0.524 3.476
16 O -0.536 6.536
17 C -0.064 4.064
18 C -0.156 4.156
19 C 0.018 3.982
20 O -0.193 6.193
21 C 0.050 3.950
22 C -0.108 4.108
23 C -0.097 4.097
24 C -0.137 4.137
25 C -0.066 4.066
26 C -0.112 4.112
27 C 0.100 3.900
28 H 0.257 0.743
29 H 0.386 0.614
30 H 0.074 0.926
31 H 0.076 0.924
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.103 0.897
35 H 0.104 0.896
36 H 0.207 0.793
37 H 0.130 0.870
38 H 0.133 0.867
39 H 0.128 0.872
40 H 0.124 0.876
41 H 0.068 0.932
42 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.635 -24.361 0.854 25.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.206 4.206
3 Si 0.740 3.260
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.376 4.376
8 H 0.090 0.910
9 N -0.356 5.356
10 C 0.060 3.940
11 H 0.080 0.920
12 C -0.196 4.196
13 C -0.023 4.023
14 N -0.349 5.349
15 C 0.312 3.688
16 O -0.412 6.412
17 C -0.104 4.104
18 C -0.158 4.158
19 C -0.047 4.047
20 O -0.094 6.094
21 C 0.003 3.997
22 C -0.127 4.127
23 C -0.115 4.115
24 C -0.155 4.155
25 C -0.084 4.084
26 C -0.113 4.113
27 C -0.023 4.023
28 H 0.067 0.933
29 H 0.221 0.779
30 H 0.093 0.907
31 H 0.095 0.905
32 H 0.081 0.919
33 H 0.080 0.920
34 H 0.121 0.879
35 H 0.122 0.878
36 H 0.223 0.777
37 H 0.148 0.852
38 H 0.151 0.849
39 H 0.146 0.854
40 H 0.142 0.858
41 H 0.086 0.914
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 7.186 -24.600 0.270 25.630
hybrid contribution 0.164 1.203 0.229 1.235
sum 7.350 -23.397 0.499 24.530
Atomic orbital electron populations
1.69650 1.05165 1.26042 1.56918 1.24777 0.95533 0.97829 1.02492
0.86241 0.78528 0.83326 0.77893 1.21169 1.21640 1.21159 1.19156
0.91008 0.83779 1.43686 0.91036 1.42250 1.05824 0.99326 1.88155
1.21294 0.94187 0.85666 0.92873 0.91962 1.23412 1.02885 0.91262
1.02084 1.22113 0.95195 0.97660 0.87342 1.48477 1.51154 1.06167
1.29113 1.20130 0.81451 0.82377 0.84826 1.90730 1.40871 1.83611
1.26038 1.19943 1.02520 0.88807 0.99133 1.20437 0.99110 0.97602
0.98628 1.23685 0.99428 0.86348 0.95216 1.83997 1.45406 1.42805
1.37204 1.19598 0.89575 0.96706 0.93808 1.19912 0.98539 1.00185
0.94051 1.20908 0.94815 0.96727 0.99049 1.20772 1.01163 0.95272
0.98280 1.20293 0.94628 0.99282 0.94245 1.19723 0.98359 0.95431
0.97761 1.22518 0.97532 0.83541 0.98730 0.93272 0.77931 0.90715
0.90500 0.91872 0.91967 0.87908 0.87813 0.77653 0.85177 0.84896
0.85385 0.85762 0.91369 0.90645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16
2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16
3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16
4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
7 C -0.25 -6.54 9.98 -15.06 -0.15 -6.69 16
8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16
9 N -0.72 -17.20 5.28 -51.35 -0.27 -17.47 16
10 C 0.17 3.24 3.69 -65.78 -0.24 3.00 16
11 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16
12 C -0.16 -2.41 6.65 -24.89 -0.17 -2.57 16
13 C 0.10 1.22 6.49 -3.06 -0.02 1.20 16
14 N -0.61 -9.08 3.33 -170.51 -0.57 -9.65 16
15 C 0.52 7.83 7.84 -10.99 -0.09 7.74 16
16 O -0.54 -10.29 16.29 5.55 0.09 -10.20 16
17 C -0.06 -0.68 5.44 -29.03 -0.16 -0.83 16
18 C -0.16 -1.88 4.85 -102.66 -0.50 -2.38 16
19 C 0.02 0.20 11.89 29.24 0.35 0.54 16
20 O -0.19 -2.39 10.58 3.89 0.04 -2.35 16
21 C 0.05 0.63 7.42 -38.48 -0.29 0.35 16
22 C -0.11 -1.10 10.07 -39.46 -0.40 -1.50 16
23 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16
24 C -0.14 -1.31 9.98 -39.94 -0.40 -1.71 16
25 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16
26 C -0.11 -1.45 6.38 -105.16 -0.67 -2.12 16
27 C 0.10 1.75 6.53 -2.53 -0.02 1.74 16
28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
29 H 0.39 9.95 7.71 -40.82 -0.31 9.63 16
30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16
37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16
39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16
40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16
41 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16
42 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16
LS Contribution 359.32 15.07 5.41 5.41
Total: -1.00 -33.69 359.32 -8.99 -42.68
By element:
Atomic # 1 Polarization: 13.35 SS G_CDS: -5.77 Total: 7.58 kcal
Atomic # 6 Polarization: -2.39 SS G_CDS: -3.63 Total: -6.02 kcal
Atomic # 7 Polarization: -53.74 SS G_CDS: -0.11 Total: -53.85 kcal
Atomic # 8 Polarization: -12.69 SS G_CDS: 0.13 Total: -12.56 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -33.69 -8.99 -42.68 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001019562964.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.912 kcal
(2) G-P(sol) polarization free energy of solvation -33.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds