Wall clock time and date at job start Tue Mar 31 2020 11:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.89071 * 322.57726 * 10 9 7 12 12 C 1.55164 * 111.00115 * 86.45508 * 10 9 7 13 13 C 1.54324 * 102.93878 * 153.57413 * 12 10 9 14 14 N 1.47025 * 107.27511 * 337.80517 * 13 12 10 15 15 C 1.34769 * 125.64727 * 178.92140 * 14 13 12 16 16 O 1.21288 * 120.00014 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00075 * 0.02562 * 15 14 13 18 18 C 1.50704 * 109.46988 * 180.02562 * 17 15 14 19 19 C 1.33999 * 126.90479 * 264.68705 * 18 17 15 20 20 O 1.34454 * 110.14971 * 179.89008 * 19 18 17 21 21 C 1.34811 * 110.88934 * 0.39211 * 20 19 18 22 22 C 1.38938 * 133.49087 * 179.77202 * 21 20 19 23 23 C 1.37850 * 119.81552 * 180.02562 * 22 21 20 24 24 C 1.38744 * 120.68499 * 359.95296 * 23 22 21 25 25 C 1.36739 * 120.41701 * 0.04543 * 24 23 22 26 26 C 1.39406 * 119.71504 * 359.97438 * 25 24 23 27 27 C 1.47425 * 108.69807 * 358.94199 * 14 13 12 28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 30 30 H 1.08994 * 110.71690 * 271.93560 * 12 10 9 31 31 H 1.08994 * 110.72044 * 35.03368 * 12 10 9 32 32 H 1.09003 * 109.87897 * 97.22490 * 13 12 10 33 33 H 1.09000 * 109.87664 * 218.23044 * 13 12 10 34 34 H 1.08994 * 109.47165 * 299.99950 * 17 15 14 35 35 H 1.09002 * 109.46855 * 60.00671 * 17 15 14 36 36 H 1.07995 * 124.92630 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.09604 * 0.02562 * 22 21 20 38 38 H 1.08005 * 119.65988 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.79171 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.14073 * 179.97438 * 25 24 23 41 41 H 1.09000 * 110.36918 * 265.28562 * 27 14 13 42 42 H 1.09005 * 110.36380 * 142.97099 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9528 -3.5890 -0.6183 12 6 2.4138 -4.0936 1.4463 13 6 2.5173 -5.6288 1.3279 14 7 1.7447 -6.0283 0.1425 15 6 1.6048 -7.2879 -0.3159 16 8 0.9412 -7.5018 -1.3084 17 6 2.2727 -8.4306 0.4047 18 6 1.9618 -9.7228 -0.3058 19 6 0.9813 -10.5873 -0.0112 20 8 1.0089 -11.6269 -0.8635 21 6 2.0153 -11.4946 -1.7506 22 6 2.4665 -12.2746 -2.8081 23 6 3.5517 -11.8609 -3.5507 24 6 4.2000 -10.6705 -3.2545 25 6 3.7717 -9.8883 -2.2180 26 6 2.6762 -10.2906 -1.4555 27 6 1.1491 -4.8227 -0.4618 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0005 30 1 3.3674 -3.6654 1.7549 31 1 1.6227 -3.8101 2.1404 32 1 3.5602 -5.9217 1.2068 33 1 2.1017 -6.0981 2.2196 34 1 3.3511 -8.2727 0.4155 35 1 1.9024 -8.4804 1.4287 36 1 0.2704 -10.4655 0.7926 37 1 1.9686 -13.2025 -3.0476 38 1 3.9006 -12.4694 -4.3720 39 1 5.0486 -10.3600 -3.8461 40 1 4.2800 -8.9627 -1.9911 41 1 0.1321 -4.6785 -0.0972 42 1 1.1556 -4.9007 -1.5491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019562964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:38 Heat of formation + Delta-G solvation = 12.235356 kcal Electronic energy + Delta-G solvation = -24954.098109 eV Core-core repulsion = 21286.906000 eV Total energy + Delta-G solvation = -3667.192109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61090 -39.77889 -38.01428 -37.35084 -34.17432 -34.02966 -31.62841 -30.75685 -30.09734 -29.56259 -28.60754 -27.07597 -23.76914 -23.46449 -22.82376 -22.46911 -20.65902 -20.08694 -18.96869 -17.53756 -17.37436 -17.16889 -16.97207 -16.12445 -16.05442 -15.90399 -15.02594 -14.71903 -14.32349 -14.15903 -13.96195 -13.62417 -13.28690 -13.25078 -12.84459 -12.72898 -12.49256 -12.44163 -12.24775 -12.00357 -11.75254 -11.63336 -11.18844 -11.06200 -10.86525 -10.72275 -10.35260 -10.24814 -10.10889 -9.80057 -9.64409 -8.98565 -8.79409 -8.43629 -8.31280 -7.08081 -5.84886 -3.15741 0.75448 1.20181 2.11336 2.63971 2.74651 3.18492 3.39470 3.44378 3.45301 3.57274 4.26392 4.36162 4.52159 4.65837 4.66508 4.78070 4.88507 5.01171 5.13057 5.19511 5.23360 5.27886 5.30410 5.33093 5.43720 5.53866 5.57130 5.70592 5.74624 5.94165 6.04388 6.08910 6.11440 6.21159 6.23293 6.27987 6.34458 6.45675 6.52439 6.58450 6.88039 6.99755 7.62012 7.70248 8.30008 8.32860 9.43965 9.97883 10.32772 11.37247 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.002414 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.730755 B =11595.679780 C =11966.748379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.062 0.938 12 C -0.155 4.155 13 C 0.100 3.900 14 N -0.614 5.614 15 C 0.524 3.476 16 O -0.536 6.536 17 C -0.064 4.064 18 C -0.156 4.156 19 C 0.018 3.982 20 O -0.193 6.193 21 C 0.050 3.950 22 C -0.108 4.108 23 C -0.097 4.097 24 C -0.137 4.137 25 C -0.066 4.066 26 C -0.112 4.112 27 C 0.100 3.900 28 H 0.257 0.743 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.207 0.793 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 -24.361 0.854 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.080 0.920 12 C -0.196 4.196 13 C -0.023 4.023 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.412 6.412 17 C -0.104 4.104 18 C -0.158 4.158 19 C -0.047 4.047 20 O -0.094 6.094 21 C 0.003 3.997 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.113 4.113 27 C -0.023 4.023 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.223 0.777 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.086 0.914 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.186 -24.600 0.270 25.630 hybrid contribution 0.164 1.203 0.229 1.235 sum 7.350 -23.397 0.499 24.530 Atomic orbital electron populations 1.69650 1.05165 1.26042 1.56918 1.24777 0.95533 0.97829 1.02492 0.86241 0.78528 0.83326 0.77893 1.21169 1.21640 1.21159 1.19156 0.91008 0.83779 1.43686 0.91036 1.42250 1.05824 0.99326 1.88155 1.21294 0.94187 0.85666 0.92873 0.91962 1.23412 1.02885 0.91262 1.02084 1.22113 0.95195 0.97660 0.87342 1.48477 1.51154 1.06167 1.29113 1.20130 0.81451 0.82377 0.84826 1.90730 1.40871 1.83611 1.26038 1.19943 1.02520 0.88807 0.99133 1.20437 0.99110 0.97602 0.98628 1.23685 0.99428 0.86348 0.95216 1.83997 1.45406 1.42805 1.37204 1.19598 0.89575 0.96706 0.93808 1.19912 0.98539 1.00185 0.94051 1.20908 0.94815 0.96727 0.99049 1.20772 1.01163 0.95272 0.98280 1.20293 0.94628 0.99282 0.94245 1.19723 0.98359 0.95431 0.97761 1.22518 0.97532 0.83541 0.98730 0.93272 0.77931 0.90715 0.90500 0.91872 0.91967 0.87908 0.87813 0.77653 0.85177 0.84896 0.85385 0.85762 0.91369 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.54 9.98 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.20 5.28 -51.35 -0.27 -17.47 16 10 C 0.17 3.24 3.69 -65.78 -0.24 3.00 16 11 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 12 C -0.16 -2.41 6.65 -24.89 -0.17 -2.57 16 13 C 0.10 1.22 6.49 -3.06 -0.02 1.20 16 14 N -0.61 -9.08 3.33 -170.51 -0.57 -9.65 16 15 C 0.52 7.83 7.84 -10.99 -0.09 7.74 16 16 O -0.54 -10.29 16.29 5.55 0.09 -10.20 16 17 C -0.06 -0.68 5.44 -29.03 -0.16 -0.83 16 18 C -0.16 -1.88 4.85 -102.66 -0.50 -2.38 16 19 C 0.02 0.20 11.89 29.24 0.35 0.54 16 20 O -0.19 -2.39 10.58 3.89 0.04 -2.35 16 21 C 0.05 0.63 7.42 -38.48 -0.29 0.35 16 22 C -0.11 -1.10 10.07 -39.46 -0.40 -1.50 16 23 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16 24 C -0.14 -1.31 9.98 -39.94 -0.40 -1.71 16 25 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 26 C -0.11 -1.45 6.38 -105.16 -0.67 -2.12 16 27 C 0.10 1.75 6.53 -2.53 -0.02 1.74 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 9.95 7.71 -40.82 -0.31 9.63 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 42 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -33.69 359.32 -8.99 -42.68 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.77 Total: 7.58 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.63 Total: -6.02 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.11 Total: -53.85 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.13 Total: -12.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.69 -8.99 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019562964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.912 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds